genome.fa.s389.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000389.1 Hibiscus syriacus cultivar Beakdansim tig00000715_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2672246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  3  of  15  ( 1688 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419675--419712	15	2.5	15	100	0	76	39	34	13	13	1.83
419911--419981	28	2.5	28	90	0	106	56	4	2	36	1.34
419940--420012	34	2.1	34	84	0	92	56	5	4	34	1.42
420407--420885	128	3.7	128	93	0	814	32	21	24	21	1.98
420966--421006	8	5.2	8	88	5	66	36	26	0	36	1.57
420966--421006	15	2.6	16	84	7	57	36	26	0	36	1.57
424572--424596	6	4.2	6	100	0	50	84	0	0	16	0.63
434012--434042	15	2.1	15	100	0	62	25	12	22	38	1.90
445776--445817	21	2.0	21	90	0	66	26	26	21	26	1.99
445924--445989	19	3.5	19	91	0	87	36	13	10	39	1.80
446054--446113	29	2.0	31	90	6	97	41	16	6	35	1.75
449524--449613	47	1.9	47	88	4	137	45	20	8	25	1.79
453316--453346	13	2.4	13	100	0	62	41	32	19	6	1.77
460334--460381	18	2.7	18	80	3	62	72	0	12	14	1.11
460476--460504	13	2.3	13	94	5	51	75	0	6	17	1.01
460485--460541	16	3.2	18	73	12	55	73	0	3	22	0.98
460649--460707	2	31.5	2	76	19	56	55	0	3	40	1.16
460649--460707	13	4.5	14	72	19	56	55	0	3	40	1.16
460653--460703	25	2.0	25	88	7	75	56	0	3	39	1.18
460649--460709	14	4.1	15	84	12	72	57	0	3	39	1.15
462177--462435	110	2.4	108	83	6	321	23	19	23	33	1.97
463181--463387	65	3.1	68	77	6	176	37	9	18	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463616--463831	106	2.0	106	84	0	279	21	19	25	33	1.97
464429--464519	32	2.8	32	86	1	128	39	19	10	29	1.86
465642--465712	32	2.2	32	85	5	90	2	14	1	81	0.87
465667--465717	21	2.4	21	86	3	75	0	13	1	84	0.71
465642--465717	30	2.5	30	82	4	80	2	14	2	80	0.93
465667--465717	11	4.8	10	85	9	57	0	13	1	84	0.71
470175--470250	22	3.4	21	73	19	64	76	3	3	15	1.09
470177--470235	25	2.3	25	82	8	75	74	5	5	15	1.17
470175--470250	14	5.6	13	72	9	55	76	3	3	15	1.09
470457--470513	16	3.2	18	73	12	55	73	0	3	22	0.98
470632--470672	14	3.1	14	89	6	59	70	0	0	29	0.87
470641--470687	21	2.2	22	85	11	62	68	0	4	27	1.08
470687--470716	12	2.6	12	94	5	53	70	0	0	30	0.88
473300--473336	19	1.9	19	88	0	56	29	27	24	18	1.98
480346--480391	19	2.4	19	100	0	92	39	0	21	39	1.54
490540--490600	20	2.9	20	85	7	59	24	32	26	16	1.96
490583--490622	21	1.9	21	89	0	62	25	40	25	10	1.86
492607--492640	17	2.0	17	88	0	50	14	2	29	52	1.56
504335--504361	2	13.5	2	100	0	54	51	0	0	48	1.00
505261--505304	2	22.0	2	100	0	88	50	0	0	50	1.00
509198--509230	2	17.0	2	87	6	50	48	0	3	48	1.17
516819--516848	15	2.0	15	93	0	51	36	6	16	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
516850--516891	14	2.9	15	75	7	50	47	4	14	33	1.65
516898--516933	14	2.6	14	90	0	54	33	13	22	30	1.93
517041--517139	49	2.0	50	80	9	114	47	2	0	50	1.12
517118--517186	32	2.3	30	82	12	79	44	0	4	50	1.21
517274--517349	28	2.7	30	82	13	90	56	1	0	42	1.07
517275--517337	26	2.3	27	82	15	76	52	1	0	46	1.10
517316--517362	24	2.0	23	83	4	58	57	2	0	40	1.11
517274--517374	29	3.5	28	80	15	84	53	1	0	44	1.11
518010--518061	20	2.6	20	100	0	104	36	30	15	17	1.91
518173--518348	20	8.8	20	79	3	138	40	21	17	19	1.91
518137--518350	40	5.3	40	84	1	241	39	21	18	20	1.93
518173--518350	60	2.9	59	77	7	171	41	21	17	19	1.91
519207--519260	24	2.2	24	93	0	90	20	18	20	40	1.91
521676--521727	20	2.6	20	90	0	77	34	25	21	19	1.96
521732--521820	19	4.7	19	86	8	128	46	17	20	15	1.85
521699--521820	38	3.4	37	80	11	128	43	19	22	14	1.87
522056--522109	20	2.7	20	91	0	81	33	24	20	22	1.97
522102--522177	33	2.3	34	93	2	127	44	18	22	14	1.86
522492--522530	20	2.0	20	89	0	60	35	20	23	20	1.96
522821--522875	20	2.8	20	94	0	92	30	23	23	21	1.99
522242--523256	345	2.9	345	98	0	1933	31	18	17	33	1.94
522847--522928	33	2.3	34	79	12	94	40	21	24	13	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
523166--523220	20	2.8	20	91	0	83	30	23	25	20	1.98
523192--523287	33	2.8	33	88	3	129	41	19	23	14	1.89
523297--523388	19	5.1	19	82	14	122	14	21	17	46	1.83
523608--523659	20	2.6	20	84	0	68	36	25	19	19	1.95
523664--523733	19	3.7	19	85	11	99	45	18	21	14	1.84
523969--524023	20	2.8	20	88	0	74	34	23	21	20	1.97
524015--524090	33	2.3	34	93	2	127	44	18	22	14	1.86
524100--524248	19	8.1	19	86	8	218	16	20	16	46	1.83
524465--524519	20	2.8	20	94	0	92	30	23	23	21	1.99
524511--524598	14	5.5	14	67	25	50	44	19	23	12	1.85
524524--524636	19	6.4	19	75	20	129	46	17	22	14	1.84
524491--524617	33	3.8	33	91	3	200	43	19	23	13	1.86
524491--524617	67	1.9	67	93	0	218	43	19	23	13	1.86
524869--524923	20	2.7	21	91	5	87	32	23	21	21	1.98
524915--525002	14	5.5	14	67	25	50	44	19	23	12	1.85
524895--525063	33	4.9	33	85	9	221	43	18	23	14	1.86
524928--525083	19	8.7	19	76	18	165	45	17	21	14	1.85
524875--525063	67	2.7	70	83	9	242	42	19	22	15	1.88
525322--525373	20	2.6	20	87	0	68	34	23	21	21	1.97
525662--525716	20	2.8	20	91	0	83	30	23	25	20	1.98
525688--525783	33	2.8	33	88	3	129	41	19	23	14	1.89
525793--525884	19	5.1	19	82	14	122	14	21	17	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526104--526155	20	2.6	20	84	0	68	36	25	19	19	1.95
526446--526500	20	2.8	20	88	0	74	34	23	21	20	1.97
526492--526567	33	2.3	34	93	2	127	44	18	22	14	1.86
525867--526536	345	1.9	344	96	0	1223	31	18	17	33	1.94
526577--526706	19	7.1	19	84	9	180	16	20	16	46	1.83
523302--531984	822	10.5	822	82	11	10548	30	18	17	33	1.94
526926--526977	20	2.6	20	87	0	68	34	23	21	21	1.97
526982--527028	18	2.6	18	86	3	58	46	19	19	14	1.84
527268--527321	20	2.7	20	91	0	81	33	24	20	22	1.97
526689--527358	345	1.9	344	97	0	1268	31	18	17	33	1.94
527314--527389	33	2.3	34	93	2	127	44	18	22	14	1.86
527691--527742	20	2.6	20	87	0	68	34	23	21	21	1.97
528033--528087	20	2.8	20	94	0	92	30	23	23	21	1.99
527454--528123	345	1.9	344	97	0	1277	31	18	17	33	1.94
528059--528154	33	2.8	33	87	3	120	42	18	23	14	1.88
528164--528293	19	7.1	19	84	9	180	16	20	16	46	1.83
528513--528564	20	2.6	20	84	0	68	36	25	19	19	1.95
528855--528909	20	2.8	20	91	0	83	30	23	25	20	1.98
528276--528945	345	1.9	344	96	0	1250	31	18	17	32	1.94
528901--528976	33	2.3	34	95	2	136	44	19	22	13	1.85
528914--528981	20	3.8	20	70	23	69	47	19	20	13	1.82
528986--529115	19	7.1	19	84	9	180	16	20	16	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
529335--529386	20	2.6	20	87	0	68	34	23	21	21	1.97
529391--529437	18	2.6	18	86	3	58	46	19	19	14	1.84
529677--529731	20	2.8	20	94	0	92	30	23	23	21	1.99
529098--529767	345	1.9	344	97	0	1268	31	17	17	33	1.94
529703--529798	33	2.8	33	85	3	120	41	18	23	15	1.89
529808--529956	19	8.1	19	89	8	236	14	21	16	46	1.83
530176--530227	20	2.6	20	84	0	68	36	25	19	19	1.95
530232--530301	19	3.7	19	85	11	99	45	18	21	14	1.84
530537--530591	20	2.8	20	91	0	83	30	23	25	20	1.98
530583--530658	33	2.3	34	93	2	127	44	18	22	14	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15