genome.fa.s389.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000389.1 Hibiscus syriacus cultivar Beakdansim tig00000715_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2672246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  4  of  15  ( 1688 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
530668--530816	19	8.1	19	86	8	218	16	20	16	46	1.83
531036--531087	20	2.6	20	90	0	77	34	25	21	19	1.96
531059--531140	33	2.3	34	79	12	94	40	21	24	13	1.89
531378--531432	20	2.8	20	94	0	92	30	23	23	21	1.99
530799--531468	345	1.9	344	98	0	1286	30	18	17	33	1.94
531404--531499	33	2.8	33	88	3	129	41	19	23	14	1.89
531509--531676	19	9.1	19	89	7	265	14	21	16	47	1.82
531894--531947	20	2.7	20	91	0	81	33	24	20	22	1.97
531940--532015	33	2.3	34	93	2	127	44	18	22	14	1.86
532317--532368	20	2.6	20	90	0	77	34	21	21	23	1.97
532373--532418	18	2.5	18	86	10	58	45	19	19	15	1.85
532659--532713	20	2.8	20	94	0	92	30	23	23	21	1.99
532705--532792	14	5.5	14	67	25	50	44	19	23	12	1.85
532685--532853	33	4.9	33	85	9	221	43	18	23	14	1.86
532718--532873	19	8.7	19	76	18	165	45	17	21	14	1.85
532685--532853	67	2.4	70	88	5	238	43	18	23	14	1.86
533112--533163	20	2.6	20	87	0	68	34	23	21	21	1.97
533453--533507	20	2.8	20	91	0	83	30	23	25	20	1.98
533479--533573	33	2.8	32	85	7	118	40	21	24	14	1.90
532823--533543	344	2.1	345	98	0	1390	31	18	17	31	1.95
533512--533579	19	3.9	18	69	21	63	42	19	22	16	1.89
533583--533712	19	7.1	19	87	9	198	14	21	16	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
533932--533983	20	2.6	20	84	0	68	36	25	19	19	1.95
534272--534326	20	2.8	20	88	0	74	34	23	21	20	1.97
534318--534393	33	2.3	34	90	2	118	43	19	22	14	1.87
534403--534550	19	8.1	19	86	8	209	16	20	16	46	1.84
534770--534821	20	2.6	20	87	0	68	34	23	21	21	1.97
534533--535201	344	1.9	344	97	0	1277	30	18	17	33	1.94
535111--535165	20	2.8	20	94	0	92	30	23	23	21	1.99
535137--535232	33	2.8	33	87	3	120	42	18	23	14	1.88
535242--535371	19	7.1	19	84	9	180	16	20	16	46	1.83
535588--535639	20	2.6	20	84	0	68	36	25	19	19	1.95
535615--535693	33	2.2	36	82	8	101	41	21	24	12	1.87
535928--535982	20	2.8	20	91	0	83	30	23	25	20	1.98
535974--536049	33	2.3	34	95	2	136	44	19	22	13	1.85
535987--536054	20	3.8	20	70	23	69	47	19	20	13	1.82
536059--536188	19	7.1	19	84	9	180	16	20	16	46	1.83
536407--536458	20	2.6	20	87	0	68	34	23	21	21	1.97
536463--536509	18	2.6	18	86	3	58	46	19	19	14	1.84
536747--536801	20	2.8	20	94	0	92	30	23	23	21	1.99
536773--536868	33	2.8	33	85	3	120	41	18	23	15	1.89
536878--537026	19	8.1	19	89	8	236	14	21	16	46	1.83
537245--537296	20	2.6	20	84	0	68	36	25	19	19	1.95
537301--537370	19	3.7	19	85	11	99	45	18	21	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
537602--537656	20	2.8	20	91	0	83	30	23	25	20	1.98
537648--537723	33	2.3	34	93	2	127	44	18	22	14	1.86
537733--537880	19	8.1	19	85	9	209	16	20	16	46	1.84
537733--537880	37	4.0	38	85	9	191	16	20	16	46	1.84
537733--537876	56	2.7	53	90	5	218	15	20	16	46	1.84
538100--538151	20	2.6	20	90	0	77	34	25	21	19	1.96
538123--538204	33	2.3	34	79	12	94	40	21	24	13	1.89
537863--538531	344	1.9	344	97	0	1277	30	18	17	33	1.94
538441--538495	20	2.8	20	94	0	92	30	23	23	21	1.99
538467--538562	33	2.8	33	88	3	129	41	19	23	14	1.89
538572--538739	19	9.1	19	89	7	265	14	21	16	47	1.82
538958--539009	20	2.6	20	84	0	68	36	25	19	19	1.95
539014--539059	19	2.4	19	100	0	92	47	17	19	15	1.82
539014--539079	19	3.6	17	89	6	69	45	18	19	16	1.86
539318--539372	20	2.8	20	91	0	83	30	23	25	20	1.98
539364--539439	33	2.3	34	93	2	127	44	18	22	14	1.86
539449--539597	19	8.1	19	85	8	209	16	20	16	46	1.83
539817--539868	20	2.6	20	90	0	77	34	25	21	19	1.96
539840--539923	33	2.4	33	80	9	87	41	20	25	13	1.88
540159--540233	20	3.8	20	96	0	132	30	24	24	21	1.99
540225--540299	33	2.2	34	92	2	125	46	18	20	14	1.84
540310--540439	19	7.1	19	86	9	189	15	20	16	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
540656--540710	20	2.8	20	94	0	92	30	23	23	21	1.99
540682--540777	33	2.8	33	87	3	120	42	18	23	14	1.88
540787--540916	19	7.1	19	84	9	180	16	20	16	46	1.83
540179--541223	477	2.2	477	98	0	2000	28	18	18	34	1.94
541136--541187	20	2.6	20	84	0	68	36	25	19	19	1.95
541478--541532	20	2.8	20	91	0	83	30	23	25	20	1.98
540899--541568	345	1.9	344	96	0	1250	31	18	17	33	1.94
541524--541599	33	2.3	34	95	2	136	44	19	22	13	1.85
541537--541604	20	3.8	20	70	23	69	47	19	20	13	1.82
541609--541695	20	4.7	19	75	16	94	12	21	19	45	1.83
545268--545324	14	3.7	14	70	20	51	43	21	22	12	1.85
545259--545341	33	2.5	33	94	0	148	46	18	21	13	1.82
545282--545346	19	3.7	19	70	19	59	44	20	21	13	1.86
545372--545444	20	3.6	20	78	7	76	12	16	17	53	1.73
546005--546215	20	10.4	20	79	6	156	19	18	24	37	1.94
546007--546218	41	5.2	41	82	3	259	19	18	24	37	1.94
546212--546320	42	2.6	42	74	5	98	24	17	23	33	1.96
546309--546362	20	2.7	19	75	8	63	16	18	31	33	1.93
547082--547140	21	2.8	21	82	5	66	23	40	27	8	1.83
558283--558424	60	2.4	60	79	9	155	41	9	9	39	1.70
558921--559013	21	4.6	20	75	4	87	39	18	23	18	1.92
558918--559013	41	2.3	41	96	0	174	40	17	22	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
558940--559074	41	3.3	41	80	6	114	38	20	20	20	1.94
559002--559095	20	4.7	20	80	2	89	34	24	18	23	1.96
559649--559693	19	2.4	19	92	0	72	48	26	15	8	1.74
559689--559854	20	9.1	19	73	16	127	12	21	22	43	1.85
559694--559770	39	2.0	39	87	5	111	9	19	25	45	1.80
559742--559829	33	2.6	33	90	1	131	11	23	25	39	1.88
561913--561979	21	3.2	21	66	6	55	23	35	20	19	1.95
561857--561979	42	2.9	42	80	4	106	22	36	17	23	1.94
563336--563371	14	2.6	14	95	0	63	30	0	25	44	1.54
563554--563746	33	5.9	32	85	9	273	15	23	20	41	1.89
563547--563745	66	3.0	66	96	0	371	16	23	20	40	1.91
563968--563998	12	2.6	12	100	0	62	16	9	25	48	1.76
566051--566075	12	2.1	12	100	0	50	0	28	0	72	0.86
566250--566303	24	2.2	24	90	0	81	38	20	16	24	1.92
567363--567440	20	3.9	20	96	0	138	37	23	23	16	1.94
567459--567545	19	4.8	19	87	9	130	13	20	17	48	1.81
567459--567574	33	3.4	33	81	11	142	13	21	19	44	1.85
569561--569666	19	5.9	18	73	16	85	43	22	20	13	1.86
569563--569618	20	2.9	19	84	5	76	37	21	23	17	1.94
569633--569677	18	2.4	18	88	3	63	46	26	17	8	1.78
569695--569752	14	3.9	14	77	16	62	8	15	25	50	1.73
569678--569768	32	2.8	33	93	3	157	10	17	23	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
569753--569807	20	2.8	19	83	8	65	18	21	23	36	1.95
570280--570324	18	2.5	18	85	0	63	15	15	42	26	1.87
571644--571681	20	1.9	20	88	0	58	50	21	15	13	1.78
571945--571988	22	2.0	22	95	0	79	18	15	45	20	1.85
572176--572269	20	4.7	20	80	2	89	23	18	24	34	1.96
572156--572270	20	5.7	20	78	5	88	23	17	23	35	1.95
572198--572332	41	3.3	41	81	4	130	20	21	20	37	1.94
572259--572351	20	4.6	20	78	4	96	18	24	18	38	1.92
572259--572354	41	2.3	41	98	0	183	18	23	17	39	1.92
578922--578987	25	2.7	25	73	2	71	34	25	21	18	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15