genome.fa.s389.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000389.1 Hibiscus syriacus cultivar Beakdansim tig00000715_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2672246

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  7  of  15  ( 1688 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
793522--793643	26	4.6	25	70	20	88	30	0	16	53	1.43
793531--793658	40	3.2	40	69	30	128	32	0	14	53	1.40
793660--793702	22	2.0	22	95	0	77	37	0	11	51	1.39
793468--793712	54	4.6	54	68	19	181	35	0	12	52	1.40
793727--793785	31	1.9	31	96	0	109	42	8	6	42	1.61
798026--798050	3	8.3	3	100	0	50	68	0	32	0	0.90
800236--800273	2	19.0	2	100	0	76	0	50	0	50	1.00
801873--801922	2	25.0	2	91	0	82	46	0	4	50	1.20
802633--802690	29	2.0	29	82	0	71	13	32	27	25	1.94
802730--802787	10	5.8	10	78	15	66	25	32	29	12	1.92
802729--802806	20	3.9	20	91	0	120	28	30	28	12	1.93
802729--802830	40	2.5	42	87	4	136	27	29	30	12	1.93
802803--802877	33	2.3	33	88	0	105	26	25	38	9	1.86
802881--802965	29	2.9	29	91	0	143	23	30	32	12	1.92
803024--803079	29	1.9	29	85	7	78	23	26	33	16	1.95
810984--811239	129	2.0	128	83	6	322	12	16	22	48	1.80
833967--834035	31	2.2	31	97	0	129	43	20	11	24	1.85
844306--844344	20	2.0	20	84	0	51	69	7	7	15	1.35
851496--851591	40	2.3	40	81	13	124	34	12	16	36	1.87
862750--863633	128	6.9	128	96	0	1655	22	25	20	32	1.98
864034--864102	33	2.1	34	88	2	104	39	2	2	55	1.30
864027--864126	28	3.2	33	72	20	104	39	2	5	54	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
864645--864735	21	4.3	21	91	5	123	20	26	34	18	1.96
864742--864789	21	2.3	21	85	0	60	22	12	39	25	1.89
866509--866597	34	2.7	31	79	6	88	58	2	1	38	1.18
869274--869327	3	17.7	3	96	3	99	35	0	0	64	0.94
880572--880774	31	6.5	31	94	0	352	38	20	19	21	1.93
886355--886419	33	2.0	31	82	11	78	21	0	24	53	1.46
889058--889083	12	2.2	12	100	0	52	46	0	0	53	1.00
889067--889104	16	2.3	17	90	4	60	42	0	0	57	0.98
891286--891491	110	1.9	110	87	2	306	25	17	20	36	1.94
891959--892037	29	2.7	28	84	7	95	31	24	10	34	1.88
895871--895957	35	2.5	34	78	12	88	56	9	4	29	1.51
898239--898290	25	2.2	25	80	16	65	69	1	1	26	1.10
898323--898362	10	4.0	10	90	0	62	37	0	32	30	1.58
906944--907044	51	2.0	50	96	1	184	35	5	2	55	1.39
914093--914333	130	1.9	130	91	1	403	45	6	9	38	1.64
914642--914697	2	29.0	2	84	13	73	46	0	3	50	1.19
914645--914701	17	3.1	17	85	7	60	43	0	5	50	1.24
915301--915338	20	1.9	20	88	0	58	23	28	0	47	1.52
915383--915408	9	2.9	9	100	0	52	34	0	0	65	0.93
915383--915431	25	2.0	25	83	0	62	32	2	0	65	1.04
917648--917689	12	3.4	12	83	3	57	14	0	14	71	1.15
917728--917798	34	2.1	34	87	10	101	21	1	14	63	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
921136--921166	16	1.9	16	93	0	53	64	3	3	29	1.25
921842--921878	20	1.9	19	89	10	58	45	10	24	18	1.81
925685--925713	2	14.5	2	100	0	58	48	0	0	51	1.00
941454--941493	18	2.2	19	86	8	57	35	5	0	60	1.19
944015--944138	66	1.9	66	88	1	187	25	16	18	38	1.92
944367--944505	66	2.1	66	82	7	167	23	18	19	38	1.93
945904--945932	14	2.1	14	100	0	58	41	27	24	6	1.80
949569--949595	7	3.9	7	100	0	54	40	0	0	59	0.98
954969--955000	13	2.5	13	100	0	64	53	9	15	21	1.70
963546--963620	37	2.0	37	82	10	91	49	4	1	45	1.29
964066--964111	12	3.8	12	80	13	58	19	2	4	73	1.10
964061--964113	24	2.2	25	90	6	83	18	3	3	73	1.14
980643--980673	6	5.2	6	100	0	62	35	0	0	64	0.94
981181--981251	33	2.2	33	87	2	99	29	9	28	32	1.89
981860--981905	18	2.6	17	89	3	65	28	30	2	39	1.69
984210--984343	23	5.8	23	84	0	142	32	23	20	22	1.98
984328--984432	42	2.5	42	87	0	147	37	25	15	21	1.93
984284--984432	21	6.9	21	76	4	127	36	26	16	20	1.93
984265--984432	23	7.7	23	76	12	129	38	25	17	19	1.93
985270--985339	35	2.0	35	86	5	97	27	27	17	28	1.97
985544--985590	20	2.3	20	96	0	85	40	31	0	27	1.57
986623--986657	14	2.5	14	90	0	52	22	45	17	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
988333--988394	20	2.9	22	81	16	76	30	22	20	25	1.98
991091--991136	2	23.0	2	100	0	92	50	0	0	50	1.00
992118--992175	20	2.6	22	84	10	66	34	24	17	24	1.96
994786--994819	18	1.9	17	88	5	50	29	0	5	64	1.17
995675--995709	18	2.0	18	94	5	63	17	20	34	28	1.95
997457--997511	19	2.9	19	77	0	65	14	18	16	50	1.77
997462--997518	19	3.0	19	78	0	60	17	15	15	50	1.78
1002124--1002175	21	2.5	21	81	3	61	38	19	25	17	1.93
1002164--1002257	20	4.7	20	79	7	73	31	25	18	24	1.97
1002206--1002258	20	2.7	20	93	0	88	24	28	20	26	1.99
1002446--1002489	22	2.0	22	95	0	79	20	45	15	18	1.85
1002753--1002811	20	3.0	20	87	0	73	16	18	22	42	1.89
1002948--1003002	25	2.2	24	78	15	58	20	7	18	54	1.66
1004128--1004172	18	2.5	18	88	0	72	26	44	15	13	1.83
1004654--1004726	20	3.7	20	88	0	92	36	21	23	17	1.94
1004729--1004786	14	3.9	14	77	16	62	50	24	15	10	1.75
1004713--1004791	32	2.4	33	91	2	124	49	22	16	11	1.77
1004822--1004877	14	3.7	14	78	17	67	10	16	23	50	1.76
1004803--1004888	32	2.6	33	96	3	165	12	18	19	48	1.80
1004891--1004933	20	2.2	20	87	8	61	16	20	25	37	1.93
1006948--1007031	19	4.7	19	88	11	133	46	17	21	14	1.84
1006938--1007031	38	2.7	33	83	15	134	45	18	23	12	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1007057--1007106	20	2.5	20	96	3	93	16	24	28	32	1.96
1007316--1007366	20	2.5	20	96	0	93	19	29	19	31	1.97
1007520--1007557	20	1.9	20	84	10	51	21	47	7	23	1.77
1010767--1010889	33	3.8	33	82	6	169	42	17	23	16	1.89
1010769--1010896	65	2.0	66	93	1	222	42	17	22	17	1.89
1010889--1010963	19	4.2	19	77	16	79	13	21	22	42	1.87
1010889--1010998	52	2.1	53	91	1	177	13	21	20	44	1.86
1010918--1010965	19	2.5	19	100	0	96	10	20	22	45	1.81
1012213--1012241	13	2.2	13	100	0	58	27	13	31	27	1.94
1012270--1012473	42	4.9	41	72	11	146	23	17	36	23	1.95
1012270--1012336	21	3.2	21	68	4	55	19	20	35	23	1.95
1012300--1012473	82	2.1	84	95	2	316	23	16	37	22	1.94
1012950--1013080	63	2.1	63	98	0	253	23	36	18	21	1.95
1014515--1014626	33	3.1	38	84	11	135	46	18	23	11	1.82
1014515--1014626	19	6.1	19	81	12	144	46	18	23	11	1.82
1014622--1014667	19	2.3	20	85	7	67	6	15	26	52	1.67
1015221--1015273	20	2.7	20	90	0	79	26	18	28	26	1.98
1015282--1015335	20	2.7	20	97	0	99	25	18	24	31	1.97
1015222--1015338	61	1.9	61	83	0	153	23	17	24	34	1.96
1015222--1015356	61	2.2	61	80	2	146	22	19	24	33	1.97
1015406--1015446	21	2.0	21	85	0	55	34	31	17	17	1.93
1017869--1017942	24	3.1	24	80	0	85	50	16	13	20	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1026271--1026317	19	2.4	20	92	3	78	12	23	0	63	1.28
1026900--1026942	21	2.1	21	87	12	63	13	2	4	79	1.00
1032574--1032615	2	21.0	2	100	0	84	50	0	0	50	1.00
1033576--1033613	20	1.9	20	94	0	67	21	23	34	21	1.97
1033577--1033649	18	3.9	18	81	3	74	23	19	31	26	1.98
1033914--1033945	4	7.8	4	93	6	55	25	0	25	50	1.50
1034779--1034880	23	4.4	23	83	2	107	30	22	24	22	1.99
1034779--1034889	46	2.4	46	83	3	125	32	20	22	24	1.98
1039120--1039157	20	2.1	19	85	14	53	34	0	10	55	1.34
1039994--1040077	36	2.4	36	93	2	143	29	0	5	64	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15