genome.fa.s482.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000482.1 Hibiscus syriacus cultivar Beakdansim tig00000916_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2886609

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  2  of  16  ( 1801 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
244717--244827	42	2.6	41	76	5	114	20	36	18	23	1.95
246208--246243	14	2.6	14	90	0	54	30	0	22	47	1.52
246369--246422	14	3.5	14	73	22	54	44	20	24	11	1.83
246349--246444	33	2.8	33	92	3	147	42	20	23	12	1.86
246382--246449	20	3.8	19	72	21	74	47	19	22	11	1.81
246459--246531	33	2.2	34	95	2	130	12	24	17	45	1.83
246459--246543	33	2.5	33	88	5	100	15	22	16	45	1.84
246517--246614	40	2.4	40	83	8	110	19	21	20	38	1.93
246527--246614	20	4.4	21	79	12	96	19	19	22	38	1.93
249039--249091	24	2.2	24	93	3	90	43	16	15	24	1.87
249039--249103	24	2.8	24	88	2	69	41	18	15	24	1.89
249929--249975	20	2.3	20	92	0	76	21	19	27	31	1.97
249962--250114	20	7.7	20	91	0	252	20	18	19	41	1.91
251224--251285	28	2.1	30	82	5	74	35	1	9	53	1.44
251585--251623	14	2.8	14	100	0	78	61	0	5	33	1.18
251911--251993	36	2.2	38	81	10	100	32	16	14	36	1.89
252561--252621	31	2.0	31	96	0	113	29	26	9	34	1.88
256834--256916	36	2.2	38	85	6	116	33	19	14	32	1.92
265537--265567	13	2.4	13	100	0	62	77	0	0	22	0.77
268888--268960	3	24.3	3	94	0	128	34	2	0	63	1.09
269450--269504	28	1.9	29	88	3	85	61	12	25	0	1.31
270445--270491	14	3.5	13	80	13	51	40	2	2	55	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271136--271164	4	7.5	4	92	7	51	24	0	0	75	0.80
271135--271177	11	3.8	11	82	14	52	30	0	0	69	0.88
271136--271193	18	3.3	18	79	9	59	25	0	1	72	0.94
271184--271220	15	2.7	15	88	12	53	24	5	8	62	1.44
281620--281654	18	1.9	18	100	0	70	88	0	11	0	0.51
281620--281653	11	3.2	11	91	4	52	91	0	8	0	0.43
281984--282025	19	2.2	20	91	4	68	30	4	11	52	1.59
282775--283207	84	5.2	84	97	1	791	27	14	21	36	1.92
283822--284945	113	10.0	113	87	4	1572	37	12	19	29	1.89
285267--285339	3	24.3	3	94	0	128	34	2	0	63	1.09
285844--285899	29	1.9	29	88	0	85	62	12	25	0	1.30
285875--285904	15	1.9	16	93	6	53	80	3	16	0	0.85
286843--286889	14	3.5	13	80	13	51	40	2	2	55	1.24
287419--287500	14	6.5	12	71	20	69	42	0	1	56	1.07
287419--287496	26	3.0	27	82	12	94	44	0	1	53	1.08
287419--287554	64	2.1	65	97	1	256	42	0	1	55	1.08
287449--287524	40	2.0	36	87	10	107	43	0	1	55	1.08
287549--287610	19	3.3	19	78	15	58	37	1	0	61	1.06
291066--291219	77	2.0	77	96	0	281	50	7	14	28	1.69
291433--291462	2	15.5	2	93	6	53	50	0	0	50	1.00
297583--297609	4	6.8	4	100	0	54	25	0	25	48	1.52
298829--299212	43	8.9	41	76	10	315	28	13	23	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298829--299212	86	4.4	86	79	5	371	28	13	23	34	1.93
298872--299118	88	2.8	89	83	3	259	31	12	21	34	1.91
298829--299146	131	2.4	127	85	3	402	31	14	21	33	1.93
299629--299668	21	1.9	21	94	0	71	2	40	20	37	1.66
299632--299729	21	4.7	21	73	5	63	4	35	19	40	1.71
303770--303858	43	2.1	43	91	4	144	40	16	11	31	1.84
303835--304180	41	8.4	41	81	4	329	33	17	20	29	1.95
303841--304200	125	2.9	123	75	13	335	33	17	20	27	1.95
303855--304180	166	2.0	167	80	3	372	34	16	20	28	1.94
305432--305525	40	2.3	41	83	5	118	31	18	17	32	1.93
305448--305525	40	1.9	41	89	2	122	34	17	15	32	1.92
305551--305651	42	2.4	42	89	0	130	23	21	19	34	1.96
307927--307955	2	14.5	2	100	0	58	48	0	0	51	1.00
315644--315686	12	3.6	12	93	0	68	9	30	0	60	1.28
316857--316978	64	1.9	64	84	3	165	35	20	18	25	1.95
317717--317752	18	2.0	18	100	0	72	16	22	33	27	1.95
318715--318761	20	2.2	20	85	7	58	27	14	36	21	1.93
318662--318762	42	2.4	42	77	8	107	26	11	34	26	1.91
325568--325605	19	2.0	20	94	5	69	28	15	28	26	1.96
325573--325731	63	2.5	62	85	4	194	32	18	22	27	1.97
327238--327540	149	2.0	148	91	0	489	26	15	21	36	1.93
330918--330955	19	2.0	20	94	5	69	28	15	28	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330923--331081	63	2.5	62	86	4	203	32	19	22	26	1.97
332588--332890	149	2.0	148	90	0	480	27	15	20	36	1.93
332868--332913	23	2.0	23	91	0	74	21	23	26	28	1.99
334041--334114	22	3.5	22	70	20	66	31	13	31	24	1.93
334034--334154	42	2.9	42	81	7	149	33	12	31	23	1.91
334063--334134	20	3.5	20	71	23	60	36	11	27	25	1.90
335833--335886	20	2.6	20	79	5	54	66	12	0	20	1.24
336302--336364	17	3.7	17	77	8	65	39	7	11	41	1.70
336350--336407	17	3.4	17	75	13	64	39	6	17	36	1.76
336340--336382	17	2.5	17	85	7	61	46	4	11	37	1.61
338170--338216	2	23.5	2	100	0	94	51	0	0	48	1.00
340288--340362	2	38.0	2	97	2	143	49	0	0	50	1.00
341273--341307	17	2.1	16	89	5	52	54	0	2	42	1.15
341298--341354	18	3.1	19	80	12	64	45	1	1	50	1.22
341371--341396	13	2.0	13	100	0	52	46	7	7	38	1.61
341524--341557	17	2.0	17	88	0	50	47	0	26	26	1.53
341794--341926	2	68.5	2	71	19	95	46	2	4	46	1.35
342066--342117	15	3.4	15	89	2	77	51	7	1	38	1.42
342318--342385	7	9.7	7	82	6	75	52	27	1	17	1.53
342318--342385	21	3.2	21	83	8	84	52	27	1	17	1.53
342145--342378	125	1.9	125	85	7	332	49	18	6	25	1.71
343438--343473	15	2.6	14	87	12	56	47	5	5	41	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343411--343507	16	6.3	15	73	16	65	48	3	3	45	1.33
343418--343508	15	5.8	15	69	16	51	47	2	3	47	1.31
343721--343778	7	8.3	7	78	0	53	50	29	0	20	1.49
343721--343772	21	2.5	21	87	12	72	51	28	0	19	1.47
344127--344185	17	3.3	18	88	9	77	49	6	5	38	1.52
344252--344282	14	2.2	14	94	0	53	48	22	0	29	1.51
344252--344323	34	2.1	35	84	7	94	52	23	0	23	1.47
344258--344325	14	4.9	14	75	8	50	51	26	0	22	1.48
344802--344856	16	3.4	16	97	0	101	38	14	29	18	1.90
355178--355233	21	2.7	21	82	0	67	53	1	0	44	1.11
355163--355237	30	2.5	30	80	2	98	60	1	0	38	1.06
355453--355794	138	2.5	139	85	4	433	27	19	14	39	1.90
355857--356140	112	2.5	112	87	2	383	28	18	14	38	1.90
357223--357263	21	2.0	21	95	0	73	58	7	7	26	1.51
357612--357656	2	22.5	2	100	0	90	48	0	0	51	1.00
357656--357694	9	4.2	9	80	6	51	12	10	0	76	1.01
357663--357702	17	2.4	17	87	4	55	12	12	0	75	1.06
364912--364943	16	2.1	16	88	11	50	31	3	12	53	1.54
368865--368896	2	16.0	2	100	0	64	50	0	0	50	1.00
369242--369271	3	10.0	3	100	0	60	66	0	0	33	0.92
370640--370750	3	37.0	3	77	10	57	57	1	0	40	1.09
370640--370708	33	2.1	33	86	5	95	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370690--370744	21	2.6	21	100	0	110	56	3	0	40	1.17
370672--370750	24	3.3	24	74	13	81	56	2	0	40	1.12
370640--370750	21	5.4	21	81	8	106	57	1	0	40	1.09
373656--373709	20	2.6	20	75	16	56	42	0	0	57	0.98
373761--373807	21	2.2	21	82	14	53	42	0	2	55	1.12
373800--373902	53	2.0	53	84	3	138	48	0	1	48	1.19
379299--379347	23	2.2	21	80	16	55	18	10	4	67	1.36
379443--379488	16	3.0	16	73	20	53	36	6	8	47	1.60
383271--383299	14	2.1	14	100	0	58	79	6	13	0	0.93
383274--383322	21	2.4	20	86	10	64	85	2	10	2	0.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16