genome.fa.s482.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000482.1 Hibiscus syriacus cultivar Beakdansim tig00000916_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2886609

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  3  of  16  ( 1801 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383277--383322	14	3.2	15	84	6	51	84	2	10	2	0.79
384179--384243	11	5.5	11	71	28	53	33	7	0	58	1.27
384179--384243	25	2.7	23	84	15	87	33	7	0	58	1.27
387292--387341	21	2.5	20	87	9	66	32	10	24	34	1.88
387953--388010	30	1.9	30	86	6	82	31	8	20	39	1.83
388123--388258	24	5.7	24	87	4	179	22	22	24	30	1.99
388370--388414	2	22.5	2	95	0	81	51	0	0	48	1.00
388633--388684	27	1.9	27	92	0	86	40	11	36	11	1.78
389630--389665	18	1.9	19	88	5	56	30	11	13	44	1.79
416383--416442	2	30.0	2	100	0	120	50	0	0	50	1.00
417697--417805	57	1.9	57	85	9	150	52	11	11	24	1.70
418795--418854	31	1.9	31	89	0	93	41	8	6	43	1.61
419320--419384	21	3.5	19	73	26	59	58	1	1	38	1.17
419362--419486	28	4.4	28	71	14	96	56	1	0	42	1.09
419361--419514	61	2.5	63	89	7	228	57	1	0	40	1.10
419424--419491	14	5.1	14	69	18	56	57	1	0	41	1.08
419424--419488	24	2.5	27	85	12	91	55	1	0	43	1.09
419476--419526	12	4.3	12	76	18	54	66	1	0	31	1.03
434514--434595	43	1.9	43	82	5	103	50	24	1	24	1.57
439372--439414	21	2.0	23	81	9	54	48	2	4	44	1.36
440790--440956	42	3.9	41	78	15	126	27	13	3	55	1.55
440972--441070	41	2.4	41	94	1	180	24	11	11	53	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442575--442629	15	3.6	15	80	2	56	32	14	18	34	1.91
442742--442809	24	2.9	23	80	8	84	26	23	23	26	2.00
442742--442881	47	3.0	47	81	11	137	24	23	21	30	1.99
442794--442875	24	3.5	24	93	5	132	23	25	20	30	1.99
442919--442979	29	2.1	29	93	0	104	21	26	18	34	1.96
446864--446908	21	2.1	21	84	8	56	22	4	24	48	1.68
447377--447731	134	2.6	133	90	2	548	25	18	30	25	1.98
447760--447865	29	3.7	29	84	5	142	45	15	13	26	1.82
447745--447865	58	2.1	58	93	0	206	44	15	13	26	1.83
447937--448162	91	2.5	90	81	9	271	46	14	11	26	1.79
448104--448267	29	5.5	30	81	10	169	45	13	13	28	1.81
448109--448254	62	2.5	54	78	15	148	46	15	11	26	1.79
448234--448382	66	2.2	66	75	13	144	44	13	12	29	1.81
448333--448431	49	2.0	49	98	0	189	48	16	10	25	1.77
448402--448474	38	1.9	38	83	5	94	34	10	12	42	1.78
451367--451426	29	2.0	31	90	6	97	35	6	16	41	1.75
451491--451538	19	2.5	19	89	0	69	41	10	14	33	1.80
451645--451686	21	2.0	21	95	0	75	23	21	28	26	1.99
451715--451754	20	1.9	21	85	10	55	37	37	10	15	1.80
451969--452038	34	2.1	32	89	5	104	31	15	31	21	1.95
452898--452945	19	2.5	20	82	3	62	52	6	12	29	1.63
454216--454275	29	2.0	31	90	6	97	35	6	16	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454340--454387	19	2.5	19	89	0	69	43	6	12	37	1.68
454493--454534	21	2.0	21	95	0	75	23	21	28	26	1.99
454563--454602	20	1.9	21	85	10	55	37	37	10	15	1.80
454818--454887	34	2.1	32	84	5	86	32	14	30	22	1.94
458551--458626	28	2.7	29	79	6	75	57	14	11	15	1.65
469515--469632	9	12.3	9	75	12	110	15	25	28	30	1.96
469514--469627	19	5.8	20	84	12	130	15	24	28	30	1.96
469514--469588	29	2.5	30	91	8	127	16	26	28	29	1.96
469515--469607	29	3.2	28	87	6	123	15	25	29	30	1.95
469629--469669	5	7.8	5	84	10	55	19	53	21	4	1.63
469627--469676	22	2.3	22	100	0	100	18	48	22	12	1.80
469666--469696	7	4.4	7	100	0	62	16	29	29	25	1.96
470578--470654	31	2.4	32	73	14	79	19	27	27	25	1.99
476800--476887	9	9.3	9	74	9	77	15	26	29	28	1.96
476800--476885	19	4.5	19	88	8	104	16	24	30	29	1.96
476799--476862	29	2.2	29	86	2	85	17	25	29	28	1.97
476916--476946	7	4.4	7	91	0	53	12	29	29	29	1.94
481078--481313	45	5.2	45	89	1	312	23	20	11	44	1.83
481086--481314	90	2.5	90	90	0	350	23	20	11	44	1.84
485235--485309	20	3.8	20	73	7	82	24	21	28	26	1.99
485252--485303	18	2.8	18	80	14	61	19	23	28	28	1.98
485235--485307	38	1.9	38	85	0	101	21	21	28	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488732--488769	15	2.5	15	100	0	76	26	21	28	23	1.99
490974--491168	45	4.3	46	79	9	211	23	20	10	46	1.81
491083--491148	21	3.0	21	67	25	55	24	25	9	40	1.84
490974--491168	92	2.1	91	83	6	243	23	20	10	46	1.81
491532--491730	95	2.1	94	83	6	242	26	17	12	43	1.85
492844--493313	5	94.0	5	84	13	614	57	1	0	40	1.10
492844--493386	87	6.1	87	83	14	602	56	2	0	40	1.19
493262--493322	14	4.4	14	78	0	50	49	8	0	42	1.32
495154--495233	40	2.0	40	95	4	144	20	22	13	43	1.86
511085--511134	20	2.5	20	100	0	100	32	24	26	18	1.97
513716--513753	20	1.9	20	94	0	67	31	34	15	18	1.92
514480--515000	55	9.5	55	90	2	787	31	18	16	34	1.93
514480--515072	110	5.4	110	87	2	791	31	18	16	34	1.93
514480--515072	165	3.6	165	87	2	809	31	18	16	34	1.93
517566--517601	17	2.2	16	90	9	56	47	0	16	36	1.47
517762--517829	21	3.2	21	76	0	55	22	16	20	41	1.90
517796--517893	21	4.6	21	77	9	81	27	12	21	38	1.89
517810--517857	23	2.0	25	92	8	82	35	10	20	33	1.87
520131--520264	5	24.6	5	84	15	137	55	2	0	41	1.15
520140--520266	2	68.5	2	74	22	118	54	3	0	42	1.16
520381--520429	15	3.2	16	80	8	57	40	0	0	59	0.98
522355--522390	18	2.1	17	89	5	54	41	2	0	55	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
523277--523301	9	2.8	9	100	0	50	24	8	12	56	1.62
523348--523453	52	2.0	52	100	0	212	33	13	11	42	1.79
523606--523638	15	2.2	15	89	10	50	36	9	0	54	1.32
530122--531006	55	16.1	55	84	3	994	29	20	18	30	1.97
530122--531006	221	4.0	221	86	1	1098	29	20	18	30	1.97
535231--535262	2	16.5	2	93	6	57	50	0	0	50	1.00
535396--535423	14	2.0	14	100	0	56	21	28	7	42	1.79
536533--536594	6	9.3	6	80	13	52	22	1	3	72	1.08
536533--536587	14	3.9	14	73	17	51	23	1	3	70	1.12
536533--536587	20	2.7	20	82	5	65	23	1	3	70	1.12
536521--536594	34	2.1	35	83	11	91	20	1	4	74	1.06
536524--536593	20	3.3	20	74	16	61	21	1	4	72	1.09
536614--536653	21	1.9	20	85	10	53	25	5	5	65	1.34
536646--536697	18	2.9	17	75	8	50	25	1	0	73	0.94
537230--537390	65	2.5	66	89	3	238	32	22	15	29	1.95
537230--537409	64	2.8	63	85	7	209	31	23	16	28	1.96
539137--539175	15	2.6	15	100	0	78	35	12	33	17	1.88
543198--543252	21	2.5	21	76	5	56	27	23	23	25	2.00
543180--543260	23	3.6	23	72	11	69	27	25	20	25	1.99
545969--546031	19	3.3	19	93	0	108	28	30	19	22	1.98
547451--547484	16	2.1	17	94	5	61	32	5	38	23	1.79
550358--551063	124	5.8	122	84	6	891	33	23	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
550338--551063	359	2.0	362	89	2	1127	33	23	16	26	1.96
552087--552142	3	18.0	3	89	7	76	35	0	0	64	0.94
554417--554456	21	1.9	21	89	0	62	55	7	7	30	1.56
563453--563483	2	15.5	2	100	0	62	48	0	0	51	1.00
564483--564551	30	2.2	30	85	15	95	34	5	17	42	1.73
564492--564551	30	2.0	30	93	6	104	33	6	16	43	1.74
564631--564689	21	2.7	22	84	5	84	20	37	18	23	1.94
564695--564824	20	6.8	20	70	22	64	26	25	20	28	1.99
564770--564824	20	2.7	20	91	2	83	21	23	23	30	1.99
565259--565327	30	2.2	30	85	15	95	34	5	17	42	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16