genome.fa.s7716.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007716.1 Hibiscus syriacus cultivar Beakdansim tig00109945_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4364108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  17  of  17  ( 1966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4297777--4297898	22	5.5	21	78	12	102	76	0	22	0	0.84
4298862--4299052	51	3.7	51	87	3	278	35	16	24	23	1.95
4300639--4301169	177	3.0	177	90	1	845	30	17	21	30	1.96
4301187--4301479	124	2.4	124	91	0	462	36	16	20	26	1.94
4301422--4301556	39	3.5	38	90	3	198	43	11	21	23	1.84
4301454--4301516	20	3.2	20	65	13	58	44	11	22	22	1.84
4301298--4301679	201	1.9	200	84	4	509	39	14	20	25	1.91
4301493--4302063	123	4.6	123	87	0	721	40	13	19	26	1.89
4301187--4301803	325	1.9	325	82	5	775	38	14	20	26	1.91
4301511--4302063	247	2.2	246	85	0	737	39	13	19	26	1.89
4302184--4302244	3	21.0	3	90	6	99	32	1	0	65	1.02
4302188--4302244	23	2.5	23	94	0	96	33	1	0	64	1.04
4303798--4303824	2	13.5	2	100	0	54	51	0	0	48	1.00
4304818--4304886	3	22.7	3	72	19	54	36	1	0	62	1.04
4304817--4304891	15	4.9	15	78	18	66	38	1	0	60	1.06
4304832--4304891	31	1.9	31	83	12	79	41	0	0	58	0.98
4305102--4305154	24	2.2	24	83	6	63	9	16	26	47	1.77
4305112--4305143	14	2.3	14	100	0	64	6	15	28	50	1.68
4305113--4305163	24	2.1	24	88	0	75	9	11	23	54	1.66
4306337--4306411	10	7.7	10	68	21	52	9	12	20	58	1.60
4306343--4306405	16	3.9	16	95	0	117	7	12	22	57	1.61
4306477--4306509	16	2.1	16	100	0	66	6	12	24	57	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4307997--4308046	12	4.3	12	78	16	52	30	4	2	64	1.23
4308064--4308103	18	2.1	20	86	9	57	45	0	2	52	1.14
4308839--4308894	26	2.1	27	86	3	78	25	0	3	71	1.02
4311193--4311232	7	5.9	7	86	13	57	15	17	12	55	1.70
4318258--4318409	54	2.8	54	87	0	196	38	14	20	26	1.91
4319535--4319642	45	2.4	45	85	3	135	26	25	18	29	1.98
4319476--4320073	121	4.9	121	90	1	928	26	21	19	32	1.97
4319656--4319753	45	2.2	45	84	0	124	27	23	18	30	1.98
4319770--4319884	46	2.5	45	82	2	113	26	21	21	30	1.99
4319899--4319996	45	2.2	45	83	3	117	26	23	19	30	1.98
4320194--4320239	3	14.7	3	82	17	58	36	0	0	63	0.95
4320192--4320239	10	4.7	10	87	12	71	37	0	0	62	0.95
4320190--4320235	22	2.1	22	100	0	92	34	0	0	65	0.93
4321482--4321554	28	2.5	29	80	13	87	35	5	2	56	1.37
4321667--4321702	2	18.0	2	94	0	63	52	0	0	47	1.00
4321722--4321962	132	1.8	133	81	7	303	40	9	7	43	1.64
4330126--4330165	17	2.4	17	86	0	53	15	27	27	30	1.96
4332732--4332793	12	5.2	12	75	7	54	11	8	19	61	1.54
4332728--4332795	24	2.9	23	77	4	73	13	8	17	60	1.58
4344843--4344877	18	1.9	18	88	0	52	31	2	2	62	1.24
4346376--4346416	20	2.0	21	90	9	66	36	4	34	24	1.77
4352888--4352927	17	2.4	17	100	0	80	25	35	7	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4362148--4362373	104	2.2	103	81	2	256	36	13	12	36	1.83
4363397--4363471	3	25.7	3	91	5	127	30	0	0	69	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17

The End!