genome.fa.s7716.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007716.1 Hibiscus syriacus cultivar Beakdansim tig00109945_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4364108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  8  of  17  ( 1966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1887400--1887534	41	3.3	41	84	4	148	37	21	20	20	1.94
1887462--1887555	20	4.7	20	79	7	82	34	25	15	24	1.95
1887743--1887786	22	2.0	22	95	0	79	20	45	15	18	1.85
1889289--1889335	18	2.6	18	83	6	60	25	44	14	14	1.84
1889802--1889854	20	2.7	19	80	5	61	39	20	24	15	1.91
1889854--1889908	14	3.6	14	75	17	56	52	25	12	9	1.68
1889838--1889908	32	2.2	32	92	0	115	49	23	15	11	1.77
1889868--1889903	18	1.9	19	94	5	65	52	22	13	11	1.72
1889941--1889997	14	3.9	14	77	18	62	8	17	26	47	1.77
1889925--1890012	32	2.8	31	87	5	131	10	17	26	46	1.79
1889954--1890034	18	4.6	18	70	16	71	12	20	23	43	1.86
1891976--1892125	19	8.6	19	76	19	159	46	19	21	13	1.84
1891976--1892106	37	3.7	35	84	11	169	46	19	20	13	1.83
1892016--1892125	51	2.2	51	91	6	181	45	19	21	13	1.84
1892149--1892199	20	2.5	20	96	0	93	17	23	25	33	1.96
1893205--1893258	24	2.2	24	90	0	81	24	16	20	38	1.92
1894922--1895124	102	2.0	101	97	2	381	32	14	23	29	1.95
1895797--1895888	19	5.4	19	66	24	78	43	19	20	16	1.88
1895798--1895897	33	3.0	33	88	8	150	41	19	21	19	1.91
1896074--1896109	14	2.6	14	86	4	56	47	25	0	27	1.52
1897618--1897742	39	3.4	37	77	10	125	44	22	21	11	1.83
1897618--1897747	19	7.1	19	79	13	130	43	22	22	11	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1898282--1898375	20	4.7	20	80	7	91	25	17	24	32	1.96
1898364--1898456	20	4.5	21	78	4	100	17	24	18	39	1.91
1898303--1898437	41	3.3	41	85	4	157	20	20	20	37	1.94
1898364--1898456	41	2.3	41	100	0	186	17	24	18	39	1.91
1904740--1904896	20	7.8	20	73	6	93	38	24	17	19	1.92
1904799--1904896	41	2.4	41	77	6	110	37	22	18	21	1.94
1904883--1905056	20	8.6	20	79	5	118	34	25	20	20	1.96
1904739--1904915	61	2.9	61	76	6	182	39	24	16	18	1.91
1904863--1905057	40	4.9	39	80	3	183	35	24	20	19	1.95
1904863--1905056	60	3.2	60	83	0	244	35	24	20	19	1.95
1905431--1905501	33	2.2	33	94	0	124	11	23	16	47	1.79
1905580--1905657	41	1.9	41	97	0	147	44	16	25	12	1.83
1905581--1905656	21	3.7	21	83	3	109	46	17	25	11	1.82
1905641--1905697	14	3.7	14	75	20	60	43	21	24	10	1.83
1905636--1905700	33	2.0	33	96	0	121	44	20	24	10	1.83
1905639--1905713	33	2.3	33	90	0	114	46	22	21	9	1.79
1905730--1905836	14	6.7	15	70	26	69	9	23	21	45	1.80
1905709--1905822	17	6.7	19	74	21	110	10	22	21	45	1.82
1905714--1905822	50	2.2	51	95	5	195	10	22	21	46	1.80
1905760--1905844	33	2.6	33	100	0	170	9	23	20	47	1.79
1907451--1907823	93	4.1	93	97	2	709	22	12	19	45	1.83
1907451--1907823	184	2.0	183	97	2	703	22	12	19	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1907870--1907998	19	7.3	19	73	17	116	45	27	17	9	1.78
1907906--1907998	33	2.8	32	90	4	141	46	26	18	8	1.78
1907870--1907998	52	2.5	52	74	12	138	45	27	17	9	1.78
1907994--1908128	19	7.6	19	75	16	128	11	19	23	45	1.82
1908016--1908072	14	3.7	14	77	20	60	10	21	22	45	1.82
1907999--1908091	33	2.8	33	95	0	168	10	20	21	47	1.80
1910029--1910064	14	2.6	14	95	0	63	33	0	22	44	1.53
1910171--1910268	19	5.4	19	84	13	143	45	17	22	14	1.84
1910171--1910286	53	2.2	53	98	1	225	43	18	24	13	1.86
1910293--1910445	33	4.5	33	74	16	159	13	22	17	45	1.84
1910315--1910531	19	12.4	19	77	19	240	13	21	18	46	1.83
1910293--1910503	52	4.0	52	99	0	413	13	23	17	45	1.83
1910334--1910531	33	5.8	33	76	14	197	13	21	18	46	1.83
1912805--1912829	12	2.1	12	100	0	50	0	28	0	72	0.86
1913004--1913050	24	2.0	24	87	8	69	38	21	14	25	1.92
1913733--1913942	20	10.5	20	84	2	206	19	18	24	37	1.94
1913909--1914006	20	4.8	20	77	3	79	21	18	23	36	1.95
1913909--1914065	61	2.6	60	80	7	176	19	17	25	38	1.93
1913909--1914065	41	3.9	41	70	14	110	19	17	25	38	1.93
1920884--1920908	12	2.1	12	100	0	50	16	36	0	48	1.46
1924200--1924240	15	2.7	15	84	0	55	82	0	12	4	0.81
1924730--1924762	15	2.1	16	88	5	50	21	0	0	78	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1924902--1924938	13	2.8	13	87	0	56	24	21	21	32	1.98
1930615--1930927	76	4.2	76	84	4	323	33	16	12	36	1.87
1930619--1931163	77	7.2	74	80	6	317	32	17	13	36	1.89
1930805--1931225	39	11.1	38	76	5	352	33	17	14	34	1.90
1930817--1931225	190	2.1	191	87	1	579	32	17	14	35	1.90
1931091--1931151	19	3.2	19	64	13	52	34	19	13	32	1.90
1931257--1931535	59	4.8	59	83	0	301	29	24	14	31	1.94
1933193--1933258	24	2.8	24	75	9	64	16	0	9	74	1.06
1933204--1933255	13	3.6	15	78	21	58	13	0	9	76	1.01
1941684--1941708	7	3.6	7	100	0	50	88	0	0	12	0.53
1942135--1942358	62	3.7	62	81	8	273	32	20	19	27	1.97
1942135--1942371	120	2.0	120	83	4	298	33	20	18	27	1.96
1942777--1942947	89	1.9	89	96	0	315	44	9	15	30	1.79
1946801--1946899	45	2.2	46	83	1	119	19	20	22	38	1.94
1947974--1948072	45	2.2	46	83	1	119	19	20	22	38	1.94
1950013--1950048	3	11.7	3	94	5	63	30	2	0	66	1.06
1950877--1950929	10	5.2	10	78	10	54	20	28	11	39	1.87
1951420--1951572	62	2.5	60	83	5	193	35	14	16	33	1.89
1951436--1951609	62	2.9	59	82	6	190	33	14	17	34	1.90
1953816--1953875	28	2.1	29	93	3	104	45	10	15	30	1.78
1953815--1953879	29	2.2	30	89	8	107	44	9	15	30	1.78
1956290--1956345	20	2.8	20	89	5	87	33	37	16	12	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1957861--1957921	17	3.6	16	82	6	59	44	9	8	37	1.68
1957882--1957921	18	2.3	17	87	12	55	45	12	5	37	1.64
1958653--1958695	21	2.0	21	86	0	59	30	27	25	16	1.97
1958724--1958768	22	2.0	22	91	4	72	28	33	26	11	1.91
1960052--1960269	103	2.1	103	95	1	393	26	13	23	36	1.92
1960285--1960353	23	3.0	23	82	0	84	20	21	26	31	1.98
1960578--1960619	17	2.5	17	96	0	75	35	4	7	52	1.50
1960578--1960626	17	2.9	17	90	0	53	34	8	6	51	1.57
1988422--1988798	55	6.9	55	83	2	418	35	17	18	28	1.94
1988438--1988746	165	1.9	165	88	0	474	36	17	17	27	1.93
1992114--1992161	25	1.9	25	91	0	78	22	12	33	31	1.91
1995237--1995749	55	9.3	55	83	0	598	35	17	18	28	1.93
1996617--1996811	41	4.9	41	80	11	226	33	10	21	34	1.88
1996657--1996764	42	3.0	34	76	19	119	36	9	20	34	1.85
1996689--1996897	41	5.0	42	81	4	201	33	10	21	35	1.87
1997011--1997501	245	2.0	245	80	3	560	31	12	24	31	1.92
1999930--1999996	30	2.2	30	86	0	89	44	8	17	28	1.79
2001240--2001345	39	2.7	39	82	0	131	21	17	29	31	1.97
2008666--2008706	21	2.0	20	86	13	57	51	4	7	36	1.51
2008666--2008706	20	2.0	21	86	13	59	51	4	7	36	1.51
2009939--2009971	14	2.4	14	94	0	57	51	45	3	0	1.16
2017182--2017235	28	2.0	27	82	17	67	38	1	14	44	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2017188--2017238	11	4.5	11	74	16	50	41	1	13	43	1.55
2017180--2017238	7	8.6	7	72	23	54	40	1	13	44	1.54
2037668--2037719	24	2.1	25	92	3	88	46	13	9	30	1.75
2037852--2037903	24	2.1	25	92	3	88	46	13	9	30	1.75
2037602--2037971	184	2.0	184	100	0	740	38	18	12	30	1.88
2042016--2042055	20	2.0	21	90	5	64	45	2	7	45	1.45
2061321--2061352	4	8.0	4	100	0	64	75	0	0	25	0.81
2065908--2065959	19	2.7	19	93	0	86	28	21	30	19	1.97
2066012--2066061	26	1.9	26	91	0	82	34	18	22	26	1.96
2072970--2073015	18	2.6	19	73	13	53	45	10	19	23	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17