genome.fa.s7716.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007716.1 Hibiscus syriacus cultivar Beakdansim tig00109945_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4364108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  3  of  17  ( 1966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
592437--593132	249	2.8	246	82	4	853	25	21	23	30	1.99
597182--597221	16	2.5	16	100	0	80	30	40	7	22	1.81
599630--599683	26	2.1	25	89	6	81	48	5	3	42	1.44
599642--599698	26	2.2	26	84	9	71	45	5	3	45	1.43
599664--599760	29	3.2	29	76	13	88	45	4	3	47	1.37
599665--599796	65	2.1	61	86	8	176	44	5	3	46	1.41
599726--599957	36	6.4	37	78	16	202	45	5	3	46	1.42
599932--600021	38	2.4	37	74	7	99	43	5	3	47	1.43
599722--600014	141	2.1	139	81	8	344	44	5	3	46	1.43
599917--599979	27	2.3	27	91	0	99	44	4	4	46	1.45
602238--602292	27	2.0	27	82	6	67	38	5	3	52	1.42
606719--606814	20	4.8	20	90	0	147	56	14	6	22	1.61
606727--606829	40	2.6	40	90	0	143	56	15	6	21	1.62
607832--607895	21	3.2	21	76	10	62	20	29	25	25	1.99
608650--608749	39	2.6	39	85	4	123	18	26	23	33	1.97
614414--614479	19	3.4	19	85	2	87	30	31	21	16	1.95
619395--619434	17	2.4	17	95	0	71	20	17	22	40	1.92
627081--627120	16	2.5	16	88	8	55	10	5	5	80	1.02
629739--629818	39	2.1	39	88	4	117	30	27	21	21	1.98
636517--636543	10	2.7	10	100	0	54	81	7	11	0	0.87
637410--637915	170	3.1	169	88	10	830	33	24	16	25	1.96
637569--637872	152	2.0	152	98	0	581	34	25	14	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
644982--645138	64	2.4	66	83	6	187	26	12	16	45	1.82
645021--645155	64	2.1	65	83	1	164	29	12	16	41	1.85
645179--645510	29	11.0	30	68	16	168	30	13	12	43	1.81
645221--645289	28	2.4	27	85	7	84	31	5	11	50	1.62
645228--645477	92	2.7	93	87	7	339	31	12	13	43	1.80
645463--645650	102	1.9	96	80	8	216	28	19	13	38	1.90
645564--645637	32	2.4	30	78	10	78	31	14	14	39	1.87
645732--646047	133	2.4	130	83	6	399	26	30	17	25	1.97
646270--646300	3	10.3	3	100	0	62	32	0	0	67	0.91
647730--647830	29	3.4	30	79	2	98	17	18	7	55	1.66
649060--649117	30	1.9	30	82	6	73	36	18	3	41	1.68
649566--649763	30	6.8	30	75	8	149	38	6	2	53	1.37
649566--649719	60	2.6	57	80	8	168	40	6	1	51	1.36
649573--649717	28	5.0	28	73	9	103	40	6	1	52	1.35
649566--649750	58	3.2	58	77	8	171	38	6	1	52	1.37
650775--650934	33	4.9	32	71	13	114	78	6	5	10	1.09
650764--650937	36	5.1	33	70	15	97	77	5	5	11	1.10
650896--650937	13	3.3	13	77	16	52	80	0	7	11	0.88
650764--650928	87	1.9	89	81	9	205	77	6	5	10	1.11
650786--650939	9	17.8	8	66	21	55	77	4	5	11	1.08
650964--650997	17	2.0	16	88	11	50	76	5	5	11	1.14
651018--651043	4	6.5	4	100	0	52	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
651038--651079	11	3.9	11	84	6	59	76	2	4	16	1.07
651016--651086	21	3.5	21	79	11	78	74	1	2	21	1.02
651063--651123	26	2.3	26	85	0	77	73	0	11	14	1.09
651093--651139	10	4.4	11	82	10	53	78	0	14	6	0.93
651110--651134	12	2.1	12	100	0	50	84	0	16	0	0.63
651104--651139	17	2.1	18	94	5	65	80	0	16	2	0.83
653076--653426	124	2.8	124	89	0	524	24	14	25	35	1.94
653709--653749	16	2.6	16	88	3	57	31	21	7	39	1.81
665102--665193	16	5.1	16	70	26	60	81	5	4	8	0.97
665110--665223	11	10.7	10	76	15	70	81	5	5	7	0.98
665110--665314	17	11.9	16	69	17	92	78	5	5	9	1.08
665082--665181	41	2.4	41	96	0	182	79	8	4	9	1.06
665082--665206	41	3.1	39	88	6	160	79	8	4	8	1.05
665345--665383	16	2.5	15	84	12	51	76	5	5	12	1.11
665427--665478	15	3.6	14	85	12	61	75	0	5	19	1.01
665432--665499	16	4.4	16	70	18	63	76	0	5	17	0.98
665436--665535	47	2.2	45	85	7	130	75	2	6	17	1.10
665428--665537	46	2.4	48	80	11	131	74	1	5	18	1.10
667221--667365	77	1.9	79	82	5	188	43	5	11	39	1.65
667827--667868	18	2.3	19	88	12	61	33	0	16	50	1.46
668611--668639	2	14.5	2	100	0	58	51	0	0	48	1.00
669571--669605	18	1.9	18	88	0	52	62	5	2	28	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
672503--672544	19	2.2	19	100	0	84	35	26	9	28	1.88
674646--674697	18	2.7	19	85	8	70	44	9	15	30	1.78
688958--689005	22	2.2	21	85	10	62	50	0	0	50	1.00
689069--689107	15	2.7	15	88	4	53	38	2	0	58	1.12
689077--689125	8	6.1	8	81	9	64	38	0	0	61	0.96
689075--689126	17	3.2	17	83	10	72	40	0	0	59	0.97
689168--689230	33	1.9	32	84	9	83	49	3	1	46	1.27
705035--705073	18	2.2	18	90	0	60	41	5	7	46	1.55
705086--705144	14	4.1	15	74	12	52	37	1	0	61	1.07
705179--705226	22	2.2	22	100	0	96	41	0	4	54	1.20
705265--705331	17	3.9	18	74	14	54	50	0	2	46	1.16
707305--707406	49	2.1	49	96	0	186	57	10	11	19	1.63
713382--713444	24	2.6	25	76	19	69	34	4	6	53	1.47
713388--713440	24	2.2	24	82	0	70	32	3	5	58	1.39
717883--718009	44	2.9	43	78	3	146	31	20	26	21	1.98
718084--718156	24	3.0	24	75	0	65	52	16	6	24	1.68
730242--730394	41	3.7	41	84	4	184	26	17	18	37	1.93
733131--733170	22	1.9	20	85	10	53	25	10	5	60	1.49
733722--733756	2	17.5	2	100	0	70	48	0	0	51	1.00
740027--740209	91	2.0	91	100	0	366	36	16	17	29	1.92
745312--745527	120	1.8	120	89	2	344	31	25	19	23	1.98
745649--745732	36	2.3	36	86	11	127	25	17	11	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
745785--745874	37	2.6	36	91	7	141	43	17	8	30	1.80
748232--748271	18	2.2	18	86	0	53	42	0	2	55	1.13
748565--748596	16	2.0	16	93	0	55	6	28	0	65	1.16
749010--749043	10	3.6	9	85	14	50	0	11	2	85	0.71
750185--750258	38	2.0	37	84	7	96	60	9	13	16	1.57
751066--751098	6	5.5	6	100	0	66	0	30	0	69	0.88
752168--752204	19	1.9	19	94	0	65	56	13	8	21	1.63
752245--752345	41	2.4	42	80	1	105	31	24	19	23	1.98
756136--756165	12	2.5	12	94	0	51	36	6	6	50	1.55
756247--756286	19	2.0	20	90	4	64	47	0	2	50	1.14
756406--756518	45	2.5	43	81	7	118	38	10	13	38	1.79
756776--756876	39	2.5	40	84	10	127	39	7	8	43	1.65
756779--756888	40	2.8	38	81	12	123	39	7	9	44	1.64
756860--757004	58	2.5	57	79	10	152	43	6	10	40	1.64
759843--759889	20	2.3	20	89	7	69	2	17	21	59	1.47
762961--762992	16	2.0	16	100	0	64	43	18	18	18	1.88
771207--771257	26	2.0	26	84	0	66	21	17	15	45	1.86
775864--775928	33	2.0	33	93	0	112	50	13	7	27	1.69
776380--776428	9	5.9	9	75	15	52	51	10	0	38	1.36
776379--776428	25	2.0	25	96	0	91	52	10	0	38	1.35
776787--776844	15	3.9	15	88	0	89	55	0	1	43	1.10
776787--776844	30	1.9	30	96	0	107	55	0	1	43	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
776852--776887	14	2.5	14	95	4	63	41	0	0	58	0.98
776785--776887	15	6.5	15	76	15	82	48	0	2	48	1.16
776847--776967	47	2.6	46	79	17	142	33	0	12	53	1.38
776881--776954	22	3.2	23	76	14	71	28	0	17	54	1.44
776947--776999	14	3.5	14	72	18	52	37	0	5	56	1.23
776937--777724	32	26.8	32	69	25	339	35	0	12	52	1.38
777002--777044	22	2.0	22	95	0	77	37	0	11	51	1.39
776867--777753	54	16.4	54	76	15	515	34	0	12	52	1.38
776938--777586	86	7.6	86	77	16	667	35	0	12	52	1.38
777056--777098	22	2.0	22	95	0	77	37	0	11	51	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17