genome.fa.s7716.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007716.1 Hibiscus syriacus cultivar Beakdansim tig00109945_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4364108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  7  of  17  ( 1966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1619602--1619872	61	4.5	60	71	9	151	18	16	25	38	1.92
1619602--1619873	81	3.4	81	80	6	282	18	16	25	38	1.92
1619861--1619955	20	4.7	20	66	13	59	20	18	27	33	1.96
1620116--1620171	24	2.3	24	84	3	67	51	10	3	33	1.54
1620571--1620630	15	4.0	15	75	0	57	40	28	13	18	1.88
1626010--1626159	59	2.6	58	79	4	140	32	16	22	29	1.96
1626054--1626185	59	2.2	59	87	0	183	29	16	21	32	1.95
1630382--1630416	12	3.0	12	95	4	63	25	8	25	40	1.84
1633800--1633872	31	2.4	30	79	4	76	23	36	10	28	1.89
1634613--1634654	17	2.5	17	84	7	50	26	21	0	52	1.47
1635761--1636108	158	2.2	155	88	4	513	36	18	15	29	1.92
1637486--1637515	15	2.0	15	93	0	51	43	3	20	33	1.68
1642825--1642931	31	3.4	32	79	8	123	14	28	27	28	1.96
1655216--1655247	10	3.2	10	95	0	55	28	18	25	28	1.98
1655562--1655606	18	2.5	18	92	0	72	33	6	13	46	1.69
1656827--1656857	15	2.1	15	100	0	62	19	48	0	32	1.49
1661349--1661391	20	2.2	20	86	0	59	18	4	18	58	1.56
1663743--1663828	44	2.0	44	90	0	136	20	24	23	31	1.98
1667919--1668240	45	7.2	45	88	2	427	29	21	10	39	1.86
1668664--1668849	93	2.0	95	84	8	247	27	24	12	34	1.92
1671311--1671408	24	4.1	24	87	7	128	37	20	16	25	1.93
1671321--1671418	24	4.1	25	81	7	114	38	18	17	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1673904--1673938	18	1.9	18	88	0	52	8	20	51	20	1.73
1675195--1675270	38	2.0	38	87	5	109	67	11	18	2	1.34
1676115--1676191	18	4.2	19	85	9	99	44	0	0	55	0.99
1676115--1676180	3	22.3	3	78	9	73	42	0	0	57	0.98
1677805--1677872	33	2.1	33	83	5	84	36	2	1	58	1.22
1677814--1677884	33	2.2	33	84	5	90	36	1	0	61	1.05
1683876--1683963	7	12.0	7	73	15	63	76	0	20	3	0.93
1683855--1683910	11	5.3	11	86	4	62	75	0	25	0	0.81
1683899--1683953	16	3.4	16	100	0	110	70	0	23	5	1.07
1688678--1688732	22	2.5	22	90	0	92	34	10	12	41	1.78
1689245--1689571	165	2.0	165	90	2	523	36	12	12	38	1.82
1689606--1690035	73	5.9	73	95	0	761	30	17	13	38	1.88
1690205--1690373	45	3.8	45	95	0	293	21	23	19	35	1.96
1690489--1690562	18	4.2	17	81	11	87	44	0	0	55	0.99
1690489--1690551	3	21.3	3	80	9	67	42	0	0	57	0.99
1692165--1692232	33	2.1	31	83	5	82	39	1	1	57	1.17
1695201--1695264	2	32.0	2	100	0	128	50	0	50	0	1.00
1696871--1696913	22	2.0	22	85	0	59	46	2	2	48	1.27
1701713--1701951	93	2.5	93	83	4	311	40	7	6	45	1.59
1706946--1706989	15	2.9	14	83	12	52	52	2	15	29	1.55
1712278--1712309	16	1.9	16	93	6	55	68	0	3	28	1.04
1715908--1715939	15	2.1	16	88	11	50	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1731923--1732124	76	2.7	76	90	3	302	28	0	14	56	1.42
1732797--1732847	17	2.9	17	80	16	59	27	1	0	70	0.98
1734109--1734158	23	2.2	23	92	0	82	46	10	6	38	1.62
1737385--1737419	18	2.0	17	88	5	52	25	2	5	65	1.28
1743983--1744630	81	8.0	81	87	0	893	32	21	11	35	1.89
1744020--1744630	242	2.5	243	89	2	890	32	21	11	34	1.89
1749116--1749352	55	4.3	55	88	2	334	35	20	11	32	1.89
1752977--1753426	55	8.1	55	86	3	471	37	18	11	32	1.86
1753299--1753425	57	2.2	57	97	0	236	40	19	8	31	1.82
1753758--1753800	22	2.1	21	87	12	63	30	13	13	41	1.84
1757541--1758190	81	8.1	81	86	2	837	31	20	12	36	1.89
1758251--1758281	2	15.5	2	100	0	62	51	0	0	48	1.00
1762074--1762195	40	3.0	40	91	0	190	34	23	15	26	1.95
1765971--1766020	25	2.0	25	88	11	77	66	0	4	30	1.10
1767008--1767061	17	3.2	17	72	0	54	31	0	3	64	1.11
1767740--1767780	8	5.2	8	82	5	57	36	29	0	34	1.58
1772423--1772475	24	2.3	23	90	3	79	60	1	0	37	1.08
1772431--1772467	19	1.9	19	89	10	58	56	2	0	40	1.13
1778913--1778950	16	2.3	17	86	4	51	42	7	0	50	1.31
1784524--1784778	45	5.7	45	90	0	386	25	23	13	37	1.92
1785241--1785291	20	2.5	20	81	9	59	17	35	17	29	1.93
1794886--1794970	19	4.5	19	85	1	118	32	23	7	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1795042--1795114	34	2.1	34	92	0	119	39	21	15	23	1.91
1801972--1802045	19	3.9	19	82	5	87	32	18	6	41	1.77
1802689--1802841	35	4.4	35	95	0	272	15	13	14	56	1.68
1803569--1803679	49	2.3	49	76	9	120	23	14	18	43	1.87
1805955--1805986	16	2.0	16	100	0	64	31	12	6	50	1.65
1807558--1807634	13	5.3	13	78	18	73	15	42	22	19	1.88
1807536--1807581	18	2.6	18	96	0	83	19	52	15	13	1.75
1807540--1807620	31	2.6	31	88	0	117	17	45	19	17	1.85
1807576--1807640	8	8.4	8	74	19	66	15	38	24	21	1.92
1808741--1808775	18	1.9	18	88	0	52	54	0	17	28	1.43
1812547--1812623	13	5.3	13	78	18	73	15	42	22	19	1.88
1812526--1812570	17	2.6	18	89	7	74	20	51	15	13	1.76
1812530--1812609	31	2.6	31	86	2	108	17	45	20	17	1.86
1812565--1812629	8	8.4	8	74	19	66	15	38	24	21	1.92
1813729--1813763	18	1.9	18	88	0	52	54	0	17	28	1.43
1816936--1817424	54	8.9	54	86	3	631	32	16	17	32	1.93
1822527--1823166	54	11.9	54	84	2	757	31	16	17	33	1.93
1822880--1822962	27	3.1	27	64	19	73	31	18	16	33	1.93
1824803--1824934	61	2.2	61	88	2	194	43	10	8	37	1.70
1825785--1826115	164	2.0	166	98	1	639	27	13	21	37	1.91
1835346--1835499	45	3.4	45	88	2	229	30	24	7	38	1.82
1835496--1835538	20	2.2	20	91	0	68	55	20	4	18	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1835600--1835729	60	2.2	59	85	1	170	30	23	16	30	1.96
1838266--1838315	21	2.4	21	93	0	82	38	2	18	42	1.61
1838716--1838778	23	2.7	23	87	0	90	15	25	25	33	1.95
1839969--1840021	20	2.7	20	96	0	97	28	24	20	26	1.99
1839969--1840038	20	3.5	19	90	7	88	28	21	22	27	1.99
1840073--1840119	17	2.7	18	80	3	51	31	14	21	31	1.94
1842197--1842257	31	2.0	31	83	6	79	54	6	1	37	1.37
1845409--1845445	19	1.9	19	100	0	74	24	27	10	37	1.88
1851184--1851254	32	2.3	31	85	7	90	30	9	18	40	1.83
1852882--1852916	17	2.1	17	89	5	54	60	0	0	40	0.97
1853017--1853806	393	2.0	396	87	2	1135	38	15	10	35	1.81
1858717--1858761	13	3.6	12	82	8	54	33	8	28	28	1.87
1858717--1858764	25	1.9	25	87	8	71	33	10	27	29	1.90
1860219--1860272	3	17.7	3	77	11	56	31	0	3	64	1.11
1867555--1867635	6	13.5	6	75	19	71	82	0	17	0	0.66
1867559--1867635	5	14.4	5	81	12	57	83	0	16	0	0.66
1867558--1867635	23	3.6	23	79	20	80	83	0	16	0	0.65
1867558--1867632	31	2.3	31	86	11	98	84	0	16	0	0.63
1867559--1867634	22	3.4	22	78	12	84	82	0	17	0	0.66
1868920--1869111	52	3.7	52	90	2	280	38	17	22	22	1.93
1868920--1869112	103	1.9	103	86	2	280	37	17	22	22	1.94
1871340--1871498	46	3.7	41	75	15	119	26	27	17	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1871214--1871726	129	3.9	129	76	7	464	27	26	16	29	1.97
1871955--1872013	3	18.7	3	77	16	57	33	0	1	64	1.04
1871954--1872013	13	4.9	13	74	17	58	35	0	1	63	1.05
1871955--1872013	16	3.7	16	78	13	68	33	0	1	64	1.04
1873318--1873356	20	1.9	21	89	5	62	30	28	15	25	1.96
1881570--1881609	21	1.9	21	85	10	55	25	37	25	12	1.91
1886145--1886203	30	2.0	30	93	3	102	35	6	13	44	1.71
1886526--1886581	20	2.7	20	94	5	94	42	42	3	10	1.56
1887381--1887473	21	4.5	21	78	4	100	39	18	24	17	1.91
1887381--1887473	41	2.3	41	100	0	186	39	18	24	17	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17