genome.fa.s7721.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007721.1 Hibiscus syriacus cultivar Beakdansim tig00109957_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3738426

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  12  of  16  ( 1904 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2666751--2666801	12	4.1	12	74	18	50	13	9	9	66	1.44
2670015--2670058	20	2.3	19	88	11	63	65	4	13	15	1.41
2672832--2672920	31	2.9	31	91	0	142	32	23	20	23	1.98
2675152--2675189	16	2.3	17	90	4	60	78	0	0	21	0.74
2675244--2675291	18	2.7	18	75	18	55	72	0	12	14	1.11
2675392--2675430	16	2.4	17	86	4	53	74	0	5	20	1.01
2675409--2675515	37	3.2	32	79	15	94	66	1	4	27	1.22
2675551--2675599	2	25.0	2	82	12	57	51	2	4	42	1.32
2675551--2675622	14	5.0	14	77	16	58	56	1	2	38	1.22
2675564--2675614	25	2.0	27	84	7	70	58	0	3	37	1.16
2675556--2675669	14	8.4	13	73	11	52	61	0	5	33	1.18
2676351--2676431	39	2.1	39	100	0	162	30	14	17	37	1.90
2676753--2676935	83	2.2	83	81	3	197	25	19	20	34	1.96
2677162--2677363	109	1.9	108	91	1	332	22	17	24	36	1.95
2677969--2678429	65	6.8	65	74	11	282	38	11	20	29	1.88
2678101--2678363	36	7.4	36	80	9	290	39	14	20	26	1.90
2678047--2678449	138	2.9	138	86	1	520	39	12	20	28	1.89
2678137--2678321	102	1.8	102	90	2	300	39	14	18	27	1.90
2678237--2678444	37	5.9	36	74	14	193	36	12	20	30	1.90
2679901--2680038	69	2.0	69	91	2	224	26	15	22	36	1.93
2682519--2682546	12	2.3	12	100	0	56	46	17	28	7	1.75
2683312--2683355	9	4.7	9	78	10	52	77	2	2	18	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2683397--2683444	18	2.7	18	75	18	55	72	0	12	14	1.11
2683479--2683523	23	2.0	23	81	0	54	68	4	0	26	1.08
2683507--2683597	30	3.0	31	82	9	98	71	1	5	21	1.13
2683550--2683635	22	3.9	22	68	25	56	63	0	4	31	1.14
2683471--2683597	14	8.7	14	71	13	69	70	2	3	22	1.15
2683543--2683619	29	2.6	29	82	10	77	67	0	3	28	1.08
2683565--2683662	37	2.5	40	79	14	105	62	2	5	30	1.28
2683681--2683748	2	36.0	2	76	16	65	54	1	2	41	1.24
2683681--2683749	16	4.3	16	84	10	72	55	1	2	40	1.24
2683694--2683744	25	2.0	25	88	7	75	56	0	3	39	1.18
2683714--2683753	14	2.7	14	92	7	62	62	0	2	35	1.09
2685394--2685476	22	3.8	22	83	0	94	22	26	19	31	1.98
2687756--2687873	60	2.0	60	88	3	175	25	16	8	49	1.74
2688543--2688602	26	2.3	26	88	0	84	33	5	20	41	1.74
2689375--2689431	29	2.0	29	86	6	80	47	8	12	31	1.72
2690509--2690541	15	2.2	15	94	0	57	6	15	69	9	1.34
2693169--2693408	82	3.0	81	89	5	364	36	15	14	33	1.88
2695012--2695039	2	14.0	2	100	0	56	50	0	0	50	1.00
2695443--2695505	32	2.0	32	100	0	126	31	0	33	34	1.58
2695445--2695496	16	3.2	16	68	10	52	34	0	32	32	1.58
2695656--2695984	106	3.2	99	76	14	306	29	1	11	57	1.44
2695633--2696019	106	3.6	106	74	15	273	31	1	11	56	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2695867--2696180	154	2.0	154	88	4	472	28	2	10	58	1.43
2698349--2698430	36	2.3	36	82	4	94	45	23	3	28	1.70
2702356--2702492	59	2.3	59	82	2	186	28	18	24	28	1.98
2703664--2703695	17	1.9	17	93	6	57	53	0	6	40	1.26
2704094--2704166	28	2.6	28	91	0	110	43	8	5	42	1.57
2705495--2705533	2	19.5	2	100	0	78	48	0	0	51	1.00
2706767--2706822	3	19.0	3	75	17	55	32	0	0	67	0.91
2706767--2706822	21	2.7	20	84	13	69	32	0	0	67	0.91
2707924--2707961	2	19.5	2	94	5	69	50	0	0	50	1.00
2708764--2708798	16	2.2	16	90	10	54	60	0	0	40	0.97
2715388--2715610	114	2.0	114	89	0	347	33	15	20	30	1.94
2716453--2717036	124	4.9	122	82	10	599	39	14	19	27	1.90
2716571--2716633	20	3.1	20	68	19	58	55	4	20	19	1.61
2716700--2716999	113	2.6	114	97	1	566	37	14	20	28	1.92
2717347--2717430	9	8.7	10	75	19	81	30	1	0	67	0.98
2717345--2717431	18	4.5	20	82	13	103	29	2	0	67	1.03
2718798--2718844	3	16.3	3	91	4	71	27	0	0	72	0.85
2718798--2718847	19	2.7	19	87	3	75	28	0	0	72	0.86
2718803--2718845	22	2.0	22	95	0	77	25	0	0	74	0.82
2718845--2718881	18	2.1	18	90	10	58	59	0	0	40	0.97
2724126--2724177	21	2.5	20	75	3	50	40	19	23	17	1.91
2724794--2724841	19	2.5	19	89	0	69	50	25	18	6	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2724837--2724914	19	4.1	19	90	3	120	7	16	23	52	1.69
2724837--2724914	39	2.0	38	90	2	120	7	16	23	52	1.69
2724903--2724990	33	2.6	33	89	1	122	14	25	22	37	1.92
2724969--2725015	20	2.3	20	79	13	60	12	25	14	46	1.80
2727019--2727128	42	2.6	42	78	8	116	20	35	18	25	1.95
2729312--2729378	19	3.5	19	83	4	89	37	23	23	14	1.93
2729367--2729424	14	3.9	14	79	16	71	48	24	17	10	1.78
2729351--2729467	32	3.4	33	85	8	146	46	25	17	10	1.80
2729402--2729479	38	2.1	38	100	0	156	44	30	15	8	1.77
2729414--2729478	19	3.4	19	80	16	89	46	30	15	7	1.74
2729496--2729553	14	3.9	14	75	16	62	12	17	22	48	1.80
2729479--2729569	32	2.8	33	91	3	157	13	18	20	47	1.82
2729554--2729608	20	2.8	19	83	8	65	16	23	23	36	1.94
2730084--2730128	18	2.5	18	88	0	72	13	15	44	26	1.83
2731439--2731481	20	2.2	20	95	0	77	53	18	18	9	1.70
2731977--2732090	20	5.7	20	80	2	111	24	18	26	30	1.98
2732044--2732135	20	4.5	21	71	14	59	18	19	18	43	1.88
2732080--2732172	41	2.3	41	96	0	132	17	22	18	41	1.90
2732080--2732172	20	4.6	20	79	4	96	17	22	18	41	1.90
2732577--2732646	28	2.4	31	76	13	76	35	1	2	60	1.21
2734876--2734958	41	2.0	41	81	9	98	22	16	28	31	1.96
2738932--2738973	21	2.0	21	90	0	66	11	30	21	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2740966--2741030	16	4.1	16	83	11	73	56	3	0	40	1.15
2740979--2741030	7	6.7	7	81	16	59	57	1	0	40	1.10
2740979--2741030	17	3.4	14	85	15	59	57	1	0	40	1.10
2740992--2741040	24	2.0	24	88	7	73	59	2	0	38	1.09
2741668--2741719	24	2.1	25	82	10	63	51	0	5	42	1.25
2743732--2743772	13	3.1	13	89	3	55	68	9	0	21	1.18
2745098--2745183	32	2.7	32	90	0	136	36	16	15	32	1.90
2745933--2746050	24	4.9	24	72	7	96	44	18	16	20	1.86
2750949--2750996	20	2.3	20	78	3	51	29	16	18	35	1.93
2753494--2753541	18	2.6	18	76	6	51	27	20	14	37	1.92
2754355--2754425	20	3.5	20	92	0	97	26	23	25	23	2.00
2755311--2755362	20	2.6	20	81	6	61	36	17	26	19	1.94
2755385--2755437	22	2.5	20	82	11	70	30	15	26	28	1.96
2755934--2756034	20	4.7	20	81	15	130	40	10	28	19	1.86
2755954--2756078	27	4.1	27	69	28	83	43	11	23	22	1.85
2755921--2756014	47	2.0	47	95	0	170	43	10	24	21	1.84
2755934--2756061	67	1.9	67	98	0	247	41	10	26	21	1.86
2762226--2762277	20	2.6	20	87	6	79	34	17	28	19	1.94
2762300--2762373	22	3.7	19	81	12	76	33	14	24	27	1.94
2762317--2762373	22	2.8	20	82	10	78	31	15	26	26	1.96
2762872--2762950	20	3.6	20	72	21	68	43	8	26	21	1.82
2762858--2763105	47	5.3	46	86	4	327	43	10	21	25	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2771455--2771483	10	2.7	11	89	10	51	37	0	27	34	1.57
2779839--2779876	19	2.0	19	94	0	67	60	5	13	21	1.52
2781716--2781786	21	3.5	21	65	18	60	30	19	21	28	1.97
2781714--2781803	39	2.3	39	98	0	171	31	22	21	25	1.98
2782602--2782651	17	2.9	17	75	0	55	40	6	16	38	1.73
2785340--2785443	37	2.8	37	88	0	145	40	13	12	33	1.82
2785838--2785893	6	10.2	6	78	18	50	37	0	1	60	1.07
2785842--2785905	14	5.2	12	77	9	51	37	0	1	60	1.06
2785950--2785996	2	23.5	2	100	0	94	48	0	0	51	1.00
2785999--2786046	14	3.1	14	78	18	51	18	8	4	68	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16