genome.fa.s7721.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007721.1 Hibiscus syriacus cultivar Beakdansim tig00109957_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3738426

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  16  of  16  ( 1904 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3636522--3636862	48	7.0	49	74	15	205	42	6	8	43	1.60
3636522--3636706	102	1.8	101	82	11	243	42	7	8	41	1.63
3636535--3636880	100	3.5	95	76	15	300	42	6	7	43	1.60
3636842--3636887	18	2.6	17	89	3	65	41	4	4	50	1.42
3636963--3637075	7	16.7	7	76	10	67	45	3	8	42	1.52
3636963--3637041	20	3.9	20	81	8	81	48	2	7	41	1.45
3636960--3637060	27	3.8	27	84	3	109	46	2	7	42	1.48
3637070--3637132	24	2.6	24	80	12	67	44	7	7	39	1.63
3637144--3637257	39	2.9	39	77	20	139	42	8	7	41	1.63
3637153--3637234	21	4.1	20	72	26	75	41	7	8	42	1.63
3637107--3637234	20	6.2	20	68	28	81	41	7	10	41	1.66
3637181--3637244	20	3.3	19	77	20	69	42	6	7	43	1.58
3637211--3637298	29	3.2	28	71	21	87	43	7	6	42	1.60
3637211--3637305	18	5.4	17	73	10	57	43	7	7	42	1.60
3637240--3637355	33	3.7	32	78	14	132	46	5	6	41	1.53
3637296--3637387	20	5.3	18	65	23	54	51	1	6	41	1.35
3637293--3637389	40	2.3	40	83	11	108	51	1	6	41	1.34
3637365--3637389	6	4.2	6	100	0	50	68	0	0	32	0.90
3637386--3637426	7	5.9	7	88	0	64	39	41	0	19	1.52
3637390--3637426	14	2.6	14	100	0	74	35	45	0	18	1.50
3637421--3637482	22	2.8	22	85	9	74	46	9	3	40	1.53
3637515--3637659	20	7.1	20	71	10	114	41	7	5	45	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3637525--3637562	11	3.5	11	88	0	58	44	2	2	50	1.30
3637748--3638665	216	4.3	216	95	0	1536	28	12	7	50	1.68
3644160--3644192	16	2.1	16	94	0	57	57	21	12	9	1.62
3644254--3644306	16	3.4	16	87	5	74	58	15	11	15	1.63
3645395--3645467	24	3.0	24	85	0	110	52	21	13	12	1.74
3647976--3648026	14	3.9	14	75	15	63	13	9	13	62	1.54
3647969--3648032	25	2.6	25	83	11	87	14	9	15	60	1.57
3648217--3648254	20	1.9	20	94	0	67	7	10	21	60	1.54
3648233--3648295	24	2.6	24	84	0	81	11	12	17	58	1.62
3648209--3648278	34	2.1	34	86	0	95	10	11	18	60	1.58
3648212--3648295	34	2.5	34	80	3	89	10	11	19	58	1.62
3650012--3650065	20	2.7	20	88	2	72	24	22	18	35	1.96
3650990--3651019	13	2.4	13	94	5	53	36	0	20	43	1.52
3652852--3652883	15	2.1	15	94	0	55	12	43	28	15	1.83
3658688--3658720	2	16.5	2	93	0	57	48	3	0	48	1.17
3658655--3658702	24	2.0	24	84	8	62	37	6	6	50	1.53
3660686--3660834	44	3.4	43	83	5	174	27	18	22	31	1.97
3660971--3661121	42	3.6	42	71	12	114	36	21	19	21	1.95
3660972--3661215	83	3.0	83	82	1	294	35	21	17	25	1.95
3661014--3661147	41	3.2	41	73	10	137	35	23	15	25	1.94
3667288--3667319	4	8.0	4	100	0	64	0	0	25	75	0.81
3668195--3668220	13	2.0	13	100	0	52	23	38	7	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3669260--3669620	36	9.9	38	74	18	168	45	4	6	43	1.49
3669353--3669628	35	7.9	32	78	13	162	44	4	5	44	1.48
3669352--3669643	36	8.3	33	78	13	234	44	4	5	45	1.47
3669653--3669725	26	2.8	26	75	17	80	16	2	5	75	1.11
3670880--3670947	4	17.0	4	86	6	93	25	2	0	72	0.99
3672899--3672982	3	28.0	3	78	4	89	66	0	1	32	0.99
3672891--3672939	14	3.0	17	71	20	50	57	0	2	40	1.10
3673230--3673709	139	3.6	138	82	9	468	26	19	14	38	1.91
3673230--3673816	123	4.5	136	80	9	481	26	20	14	38	1.91
3673508--3674077	123	4.6	124	93	1	927	24	20	15	38	1.92
3674514--3674548	2	17.5	2	100	0	70	48	0	0	51	1.00
3674717--3674741	4	6.2	4	100	0	50	76	0	0	24	0.80
3675999--3676044	3	16.0	3	88	8	60	73	0	0	26	0.83
3675999--3676044	23	2.0	23	91	0	74	73	0	0	26	0.83
3676253--3676294	22	1.9	22	100	0	84	9	9	42	38	1.70
3676576--3676664	30	2.9	29	91	6	133	20	15	6	57	1.61
3676848--3676881	2	17.0	2	100	0	68	50	0	0	50	1.00
3677009--3677049	17	2.4	17	100	0	82	17	36	17	29	1.92
3697287--3697525	132	1.8	133	84	8	335	43	8	9	38	1.68
3698867--3698921	19	2.9	19	86	10	69	56	0	0	43	0.99
3698866--3698918	26	2.0	27	85	3	72	54	0	0	45	0.99
3699056--3699770	227	3.1	228	95	0	1270	34	22	19	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3699056--3699770	76	9.4	76	96	0	1270	34	22	19	23	1.96
3700410--3700461	22	2.4	22	90	0	77	34	15	11	38	1.83
3703113--3703688	115	5.0	115	95	0	1012	31	20	15	32	1.94
3709963--3710011	20	2.5	21	87	9	68	69	2	4	24	1.17
3712142--3712212	3	23.0	3	88	5	106	63	0	0	36	0.95
3713752--3713844	21	4.6	20	78	4	96	38	18	24	18	1.92
3713749--3713844	41	2.3	41	98	0	183	39	17	23	18	1.92
3713752--3713844	20	4.6	20	78	4	96	38	18	24	18	1.92
3713833--3713926	20	4.7	20	77	2	80	32	24	18	24	1.97
3713830--3713907	41	1.9	41	83	0	102	38	21	16	23	1.93
3714448--3714514	19	3.5	19	83	2	80	49	23	16	10	1.77
3714510--3714560	19	2.7	19	96	0	93	11	21	21	45	1.84
3714543--3714630	33	2.6	33	94	1	149	14	27	19	38	1.91
3714609--3714655	20	2.3	20	75	13	51	14	25	12	46	1.80
3716656--3716778	42	2.9	42	79	7	115	23	35	17	22	1.95
3716712--3716778	21	3.2	21	66	6	55	23	35	20	19	1.95
3718137--3718172	14	2.6	14	95	0	63	30	0	25	44	1.54
3718331--3718448	19	6.7	19	66	19	76	13	23	20	42	1.88
3718335--3718428	33	2.8	33	98	0	179	12	24	19	43	1.85
3722220--3722256	14	2.6	14	86	0	56	48	21	0	29	1.50
3722809--3722845	14	2.6	14	86	0	56	48	21	0	29	1.50
3723395--3723431	14	2.6	14	86	0	56	48	21	0	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3721844--3727271	589	9.1	590	97	2	9845	36	19	12	31	1.89
3724574--3724610	14	2.6	14	86	0	56	48	21	0	29	1.50
3725163--3725199	14	2.6	14	86	0	56	48	21	0	29	1.50
3726338--3726374	14	2.6	14	86	0	56	48	21	0	29	1.50
3726736--3726792	20	2.8	20	94	0	96	38	17	22	21	1.93
3726814--3726887	19	4.5	16	83	16	66	13	20	18	47	1.82
3726810--3726877	19	3.8	19	87	12	101	13	22	17	47	1.82
3726986--3727022	14	2.6	14	86	0	56	48	21	0	29	1.50
3728887--3728952	20	3.5	19	83	6	89	36	24	24	15	1.93
3728942--3729030	14	5.8	14	75	19	88	47	25	17	8	1.77
3728926--3729035	32	3.4	32	98	0	211	46	24	19	10	1.80
3729042--3729136	19	5.6	17	70	24	69	11	20	23	45	1.83
3729047--3729136	32	2.8	33	91	6	157	11	18	23	46	1.81
3729121--3729175	20	2.8	19	83	8	65	16	23	23	36	1.94
3729640--3729684	18	2.5	18	85	0	63	15	15	42	26	1.87
3734322--3734365	20	2.2	20	84	8	54	47	4	0	47	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16

The End!