genome.fa.s7721.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007721.1 Hibiscus syriacus cultivar Beakdansim tig00109957_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3738426

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  8  of  16  ( 1904 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1697353--1697490	54	2.6	54	90	4	181	26	27	17	28	1.98
1698072--1698138	34	2.1	33	83	13	86	47	0	1	50	1.10
1698681--1698885	97	2.1	95	85	6	272	46	6	4	41	1.50
1699836--1699891	26	2.1	28	87	12	82	48	1	1	48	1.22
1700323--1700371	26	1.9	26	87	4	73	48	0	2	48	1.12
1700742--1700779	2	19.0	2	100	0	76	50	0	0	50	1.00
1705525--1705558	3	11.3	3	100	0	68	32	0	0	67	0.91
1708399--1708476	31	2.5	31	93	2	140	35	17	29	16	1.93
1710531--1710563	15	2.1	16	88	5	50	57	3	21	18	1.53
1712387--1712434	12	4.1	11	76	12	51	35	10	0	54	1.35
1713789--1713838	25	2.0	25	96	0	91	28	30	4	38	1.75
1717930--1717962	16	2.0	17	88	5	50	33	18	0	48	1.48
1720828--1720878	3	16.7	3	95	4	93	64	0	0	35	0.94
1721079--1721480	134	3.0	134	77	5	398	26	16	28	27	1.97
1721483--1721682	66	3.0	65	86	5	269	40	12	18	29	1.87
1721550--1721808	143	1.8	143	84	5	355	40	11	16	30	1.85
1721689--1721978	66	4.3	66	76	7	260	37	13	19	30	1.90
1721759--1721945	36	5.4	36	77	9	199	36	13	22	27	1.92
1721784--1721878	21	5.1	21	67	26	79	35	15	25	23	1.94
1721975--1722116	63	2.2	66	81	8	166	38	12	18	30	1.88
1724788--1724816	15	2.0	15	93	6	51	65	6	13	13	1.45
1724780--1724818	14	2.8	13	85	11	51	61	5	17	15	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1728596--1730000	711	2.0	709	87	2	2024	23	20	15	40	1.91
1733774--1733842	34	2.0	35	86	8	97	28	15	28	26	1.96
1734631--1734753	21	5.8	21	78	3	102	23	17	21	37	1.94
1734620--1734769	21	7.0	23	71	15	97	24	17	23	35	1.95
1734620--1734764	42	3.4	42	80	3	146	24	17	22	35	1.96
1735960--1736092	65	2.0	64	82	5	160	20	6	18	55	1.63
1736038--1736140	53	1.9	53	82	0	125	24	8	14	52	1.70
1742493--1742531	19	2.1	19	85	9	53	69	2	0	28	1.02
1744236--1744302	19	3.5	19	82	8	73	52	7	2	37	1.45
1745319--1745352	2	17.0	2	100	0	68	50	0	0	50	1.00
1745651--1745697	14	3.4	14	87	0	67	19	8	14	57	1.63
1745864--1745949	23	3.7	23	81	3	100	11	11	19	56	1.65
1745857--1745968	47	2.4	47	80	0	143	12	11	17	58	1.64
1747375--1747444	35	2.0	35	83	10	90	38	15	7	38	1.75
1747375--1747444	18	4.0	17	77	15	72	38	15	7	38	1.75
1750945--1750995	17	2.9	17	80	5	57	37	15	7	39	1.77
1750937--1750997	18	3.5	17	77	6	68	39	14	9	36	1.80
1752602--1752735	20	6.7	20	89	0	196	27	25	21	25	1.99
1752574--1752733	60	2.7	60	85	1	205	28	23	21	26	1.99
1753315--1753421	20	5.4	20	83	3	101	14	15	22	46	1.83
1755337--1755381	20	2.2	20	88	0	63	37	26	17	17	1.93
1755424--1755470	20	2.5	19	86	6	60	14	19	25	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1755962--1756003	21	2.2	19	87	12	59	21	35	19	23	1.96
1757466--1757526	14	4.3	14	73	10	52	37	0	14	47	1.45
1757625--1757678	20	2.7	20	82	0	63	44	24	18	12	1.85
1757687--1757812	34	3.5	34	73	12	117	25	20	19	34	1.96
1757721--1757959	20	12.9	20	71	18	167	25	18	22	33	1.97
1757741--1757951	54	3.9	53	86	4	271	24	18	23	34	1.96
1757681--1757843	74	2.2	74	89	0	254	24	20	20	33	1.97
1757953--1758058	50	2.1	50	98	0	203	45	12	14	28	1.80
1757959--1758037	25	3.2	25	63	13	63	45	10	16	27	1.79
1760380--1760406	14	1.9	14	100	0	54	7	18	29	44	1.77
1760619--1760673	24	2.3	24	87	0	74	36	14	18	30	1.91
1761481--1761586	20	5.3	20	91	0	149	28	20	26	24	1.99
1761481--1761631	20	7.6	20	89	3	144	27	20	23	29	1.99
1763304--1763547	119	2.1	119	98	0	470	42	11	10	36	1.74
1763368--1763553	60	3.1	59	65	21	152	41	10	8	39	1.70
1764802--1765001	101	2.0	101	86	2	278	34	9	16	40	1.81
1764846--1765123	101	2.8	98	78	10	258	32	11	14	41	1.83
1765212--1765251	21	1.9	21	85	10	55	32	10	17	40	1.83
1766450--1766488	20	1.9	21	84	5	53	35	7	15	41	1.76
1767356--1767433	2	39.0	2	100	0	156	50	0	0	50	1.00
1767706--1767767	20	3.0	20	88	4	97	41	8	14	35	1.75
1774215--1774263	22	2.2	23	85	10	66	51	26	0	22	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1775071--1775166	47	2.0	47	95	0	174	35	23	9	31	1.87
1781081--1781182	24	4.2	24	71	5	71	47	15	14	22	1.82
1785731--1785773	19	2.3	19	100	0	86	58	0	27	13	1.37
1786606--1786666	19	3.3	19	75	9	72	50	29	14	4	1.64
1788637--1788701	19	3.4	19	84	0	85	21	15	15	47	1.82
1790183--1790339	76	2.1	76	84	4	201	32	22	16	28	1.96
1790551--1790653	31	3.3	31	71	22	106	33	22	2	40	1.69
1790519--1790622	32	3.3	32	72	22	119	34	25	2	37	1.71
1790516--1790663	63	2.3	63	97	0	278	35	24	2	37	1.70
1794011--1794044	17	2.0	17	94	0	59	17	20	11	50	1.77
1795085--1795205	4	30.2	4	85	0	71	44	28	7	19	1.77
1795042--1795814	38	20.3	38	69	14	186	45	35	8	10	1.69
1795117--1795147	2	15.5	2	100	0	62	51	48	0	0	1.00
1795106--1796291	8	147.0	8	78	6	415	44	36	10	8	1.69
1795223--1796293	18	56.5	18	67	12	252	44	37	10	7	1.68
1795209--1796291	4	270.8	4	75	0	314	44	37	10	7	1.68
1795327--1795507	58	3.1	58	87	6	281	45	37	6	10	1.65
1796791--1796833	2	22.0	2	95	4	79	48	0	0	51	1.00
1798545--1798585	2	20.5	2	100	0	82	48	0	0	51	1.00
1801938--1801973	16	2.2	16	90	0	54	33	0	13	52	1.41
1807539--1807650	42	2.7	41	80	4	125	28	21	25	25	1.99
1807158--1808417	215	5.9	216	92	2	2012	32	19	15	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1807785--1807866	42	2.0	42	82	0	101	32	21	19	25	1.97
1808195--1808295	42	2.4	41	82	6	123	27	22	24	24	2.00
1808226--1808295	20	3.5	20	67	16	54	31	21	25	21	1.98
1808420--1808562	36	3.9	37	83	6	166	21	18	23	37	1.94
1809301--1809595	128	2.3	128	91	0	482	22	28	14	35	1.93
1810488--1810520	14	2.2	16	89	10	52	57	3	0	39	1.14
1815004--1815050	20	2.3	20	100	0	94	57	10	17	14	1.65
1821013--1821058	22	2.0	22	87	8	65	63	8	15	13	1.52
1824700--1824866	36	4.6	36	86	3	199	23	17	22	35	1.95
1835356--1835398	21	2.0	21	100	0	86	30	9	13	46	1.75
1835537--1835563	14	1.9	14	100	0	54	59	3	14	22	1.51
1845503--1845533	16	2.0	16	93	6	55	70	0	9	19	1.14
1847579--1847706	59	2.2	59	78	0	139	31	22	16	29	1.96
1853094--1853376	137	2.1	136	85	2	379	41	16	14	27	1.87
1854368--1854415	25	1.9	25	82	0	60	45	14	0	39	1.45
1856573--1856601	2	14.5	2	100	0	58	51	0	0	48	1.00
1858382--1858425	21	2.1	21	100	0	88	18	4	25	52	1.64
1875141--1875200	21	2.9	21	92	2	95	30	13	20	36	1.90
1878887--1879154	137	2.0	137	88	4	398	41	17	13	26	1.87
1879275--1898995	949	21.0	939	89	4	28845	33	21	8	36	1.84
1879275--1883438	936	4.4	949	93	1	6819	33	21	8	36	1.84
1902532--1902576	22	2.0	22	100	0	90	44	22	0	33	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1923019--1923457	178	2.4	177	80	8	435	28	19	12	40	1.87
1931019--1931049	16	1.9	16	93	0	53	12	19	32	35	1.90
1932924--1932962	5	7.8	5	88	0	60	0	5	76	17	0.96
1932928--1932962	15	2.3	15	100	0	70	0	5	74	20	1.02
1933059--1933111	25	2.1	25	96	0	97	28	32	11	28	1.91
1933064--1933118	25	2.2	25	90	0	83	32	29	10	27	1.91
1933236--1933279	21	2.1	21	87	8	63	52	0	0	47	1.00
1933309--1933361	4	13.8	4	82	7	65	52	0	22	24	1.47
1936712--1936742	2	15.5	2	100	0	62	48	0	0	51	1.00
1939052--1939095	20	2.2	20	84	8	54	47	4	0	47	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16