genome.fa.s7721.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007721.1 Hibiscus syriacus cultivar Beakdansim tig00109957_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3738426

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  3  of  16  ( 1904 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
592033--592189	65	2.4	64	78	5	165	31	23	15	28	1.96
592179--592225	20	2.3	20	92	0	85	29	23	21	25	1.99
593390--593549	65	2.5	65	84	5	200	26	19	23	30	1.98
602040--602199	65	2.5	65	80	7	175	26	19	23	30	1.98
606177--606245	31	2.4	28	79	13	93	37	0	11	50	1.39
606626--606666	18	2.3	19	83	12	59	63	0	0	36	0.95
606630--606666	17	2.1	18	90	5	58	62	0	0	37	0.96
609036--609064	5	5.8	5	100	0	58	37	41	0	20	1.53
614225--614256	15	2.1	15	94	0	55	40	9	6	43	1.62
617542--617572	7	4.4	7	100	0	62	41	25	32	0	1.56
620737--620775	20	1.9	21	84	5	53	53	2	0	43	1.14
626676--626805	64	2.0	64	86	0	179	48	4	9	37	1.56
626991--627035	14	3.1	14	84	12	56	57	2	0	40	1.11
627004--627035	15	2.2	15	94	5	57	62	3	0	34	1.11
627779--627864	30	2.9	30	80	13	81	46	2	1	50	1.21
627908--627959	24	2.2	24	80	16	65	38	1	3	55	1.29
628519--628581	32	2.0	32	90	0	99	31	23	12	31	1.92
631307--631413	23	4.8	22	82	7	119	14	25	27	33	1.94
636033--636113	41	2.0	41	87	0	117	35	22	14	27	1.93
640601--640647	21	2.2	22	80	7	60	29	27	27	14	1.96
641232--641266	18	1.9	18	88	11	54	54	5	17	22	1.64
642291--642357	22	3.0	22	100	0	134	19	26	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
645484--645530	21	2.2	22	80	7	60	29	27	27	14	1.96
646115--646149	18	1.9	18	88	11	54	54	5	17	22	1.64
647168--647234	22	3.0	22	100	0	134	19	26	26	26	1.99
649754--649798	22	2.2	19	84	11	54	22	0	20	57	1.40
652552--652621	28	2.5	28	97	0	131	52	10	15	21	1.71
661822--661912	23	4.0	23	72	18	75	28	25	20	25	1.99
661818--661902	21	3.7	23	73	17	88	27	25	22	24	2.00
664045--664102	15	4.1	14	80	13	57	29	5	24	41	1.76
664043--664105	27	2.3	27	83	8	74	31	4	22	41	1.74
664290--664379	23	3.9	23	86	0	117	23	22	23	31	1.99
668708--668766	18	3.3	18	95	0	109	50	6	16	25	1.70
669570--669664	42	2.3	42	100	0	190	29	12	26	31	1.93
669684--669715	2	16.0	2	100	0	64	50	0	0	50	1.00
669851--669914	15	4.5	14	78	11	60	28	6	23	42	1.78
669849--669909	27	2.2	27	82	8	70	31	4	22	40	1.75
670097--670186	23	3.9	23	97	0	162	20	24	26	28	1.99
670292--670330	19	2.0	20	85	14	55	58	5	5	30	1.41
689047--689094	20	2.5	20	83	10	55	29	16	2	52	1.56
691505--691558	20	2.6	21	85	8	67	35	24	12	27	1.92
691823--691871	22	2.2	22	81	0	62	28	16	16	38	1.90
692685--692732	13	3.5	13	73	15	51	54	0	0	45	0.99
692694--692755	16	4.1	16	75	12	67	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
692680--692767	29	3.1	29	90	4	126	54	0	0	45	0.99
692700--692740	20	2.0	20	86	13	57	53	0	0	46	1.00
699554--699585	15	2.1	15	100	0	64	37	18	0	43	1.51
703962--704918	6	159.8	6	99	0	1873	50	33	0	16	1.46
709111--709338	54	4.2	54	90	2	361	32	14	16	37	1.88
709111--709338	107	2.1	108	92	0	377	32	14	16	37	1.88
709892--709916	13	1.9	13	100	0	50	8	12	0	80	0.92
717074--717116	20	2.1	21	87	8	63	18	13	0	67	1.23
717073--717122	20	2.5	20	75	15	59	18	18	0	64	1.30
721293--721546	54	4.7	54	90	0	339	29	14	16	38	1.90
722530--722682	29	5.2	29	76	9	152	38	9	1	50	1.44
722572--722735	30	5.5	30	80	6	165	37	8	0	53	1.36
722572--722712	59	2.4	59	84	4	185	37	9	0	52	1.39
723229--723294	24	2.9	23	80	6	80	72	7	10	9	1.27
724435--724486	5	10.2	5	81	4	59	71	0	5	23	1.07
724437--724474	20	1.9	20	94	0	67	71	0	2	26	1.00
725413--725514	37	2.8	37	84	0	123	32	11	14	41	1.82
726267--727542	106	12.0	106	92	0	1998	22	18	24	34	1.96
729141--729208	25	2.7	24	73	13	66	1	10	8	79	1.00
729153--729220	14	4.7	14	76	18	68	0	13	8	77	0.98
729140--729220	30	2.8	28	80	10	92	1	12	8	77	1.04
733610--733657	20	2.7	17	74	20	53	70	4	6	18	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
733645--733695	5	10.2	5	77	8	50	70	0	5	23	1.09
733646--733695	20	2.5	20	83	6	66	70	0	6	24	1.10
733787--733839	25	2.1	25	86	6	72	67	0	1	30	1.01
733787--733856	25	2.7	25	80	8	70	62	0	4	32	1.14
740759--740978	59	3.7	59	77	7	214	39	8	1	50	1.43
740759--741065	30	10.6	29	73	10	180	38	7	2	51	1.42
740849--740963	58	2.0	58	82	3	142	35	7	2	53	1.44
740919--741075	85	1.9	84	84	6	210	38	4	2	54	1.34
741031--741078	24	2.0	23	88	4	69	37	4	2	56	1.30
743091--743853	131	5.8	131	87	2	1111	41	15	10	32	1.81
744696--744892	108	1.8	108	84	0	268	47	15	13	23	1.80
745954--745981	3	9.3	3	100	0	56	64	0	0	35	0.94
746215--746519	132	2.3	132	85	3	407	28	17	23	30	1.97
756436--756485	23	2.2	23	96	0	91	32	20	22	26	1.98
758303--758343	18	2.2	18	86	4	55	53	0	0	46	1.00
758680--759289	131	4.7	131	90	1	947	40	15	11	33	1.83
759182--759399	107	2.0	107	87	1	312	42	14	9	33	1.79
759055--759520	238	2.0	236	89	0	716	40	15	10	33	1.81
759290--759546	131	1.9	133	91	3	421	42	15	10	32	1.80
761693--761789	3	32.3	3	100	0	194	65	0	0	34	0.93
767634--767686	21	2.5	21	87	0	79	20	24	18	35	1.95
767676--767748	20	3.7	20	92	0	119	36	20	21	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
767735--767801	20	3.3	20	89	0	107	31	28	17	22	1.97
768643--768696	24	2.2	24	93	0	90	20	18	20	40	1.91
771127--771215	20	4.4	21	87	5	123	35	24	21	17	1.95
771187--771282	33	2.8	33	90	3	138	42	19	23	13	1.87
771220--771286	20	3.7	19	72	22	72	46	19	22	11	1.82
771430--771466	14	2.6	14	86	0	56	48	21	2	27	1.63
773168--773256	20	4.5	20	84	1	90	46	21	16	15	1.84
773593--773658	22	3.0	22	90	0	105	21	15	39	24	1.91
773863--773972	20	5.5	20	94	0	193	20	17	19	42	1.89
776499--776542	23	1.9	23	85	0	61	65	9	13	11	1.46
783354--783458	34	3.0	34	83	9	124	20	22	20	36	1.95
785648--785697	3	17.3	3	80	15	61	28	0	2	70	0.99
785650--785697	22	2.2	21	85	10	62	27	0	2	70	0.98
787581--787623	18	2.5	17	80	3	50	51	18	0	30	1.47
791073--791107	3	11.7	3	100	0	70	65	0	0	34	0.93
791198--791349	62	2.4	60	75	14	137	39	10	1	48	1.46
791328--791366	17	2.3	17	90	0	60	43	10	0	46	1.37
791283--791416	37	3.5	37	81	12	155	42	9	0	47	1.36
791283--791474	78	2.4	79	84	9	230	42	9	0	48	1.35
791394--791505	47	2.5	45	84	7	138	44	8	0	47	1.32
791451--791502	19	2.6	21	82	14	74	46	7	0	46	1.31
791421--791517	47	2.1	47	84	7	126	49	8	0	42	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
791694--792089	82	4.8	82	88	3	564	20	18	22	38	1.94
791678--792089	163	2.5	164	89	1	596	20	18	22	38	1.94
793175--793213	18	2.1	19	95	4	71	17	0	0	82	0.68
807155--807209	21	2.7	20	81	15	60	20	50	0	29	1.48
812179--812269	21	4.4	21	83	8	123	38	2	14	45	1.57
812189--812281	21	4.5	21	81	10	102	39	2	13	44	1.57
812189--812302	41	2.8	40	83	9	117	38	2	14	44	1.58
812179--812302	62	2.0	61	89	7	189	37	3	13	45	1.60
818302--818395	31	3.1	31	63	9	84	39	12	17	30	1.87
818302--818423	61	2.0	61	100	0	244	39	14	18	27	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16