genome.fa.s7725.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007725.1 Hibiscus syriacus cultivar Beakdansim tig00109972_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3026330

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1646 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2947664--2947720	14	3.7	14	72	20	51	8	22	24	43	1.81
2947786--2948058	93	3.1	87	90	6	324	44	18	13	23	1.85
2947836--2948058	93	2.4	93	98	0	428	44	18	13	22	1.85
2949749--2949805	14	3.7	14	75	20	60	43	22	24	8	1.81
2949741--2949822	33	2.5	33	100	0	164	47	19	23	9	1.79
2949763--2949827	19	3.7	19	74	19	77	44	21	23	10	1.83
2949839--2949895	14	3.7	14	75	20	60	8	24	22	43	1.81
2949823--2949902	33	2.4	33	95	0	142	8	21	22	47	1.78
2949883--2949956	21	3.5	21	80	7	96	13	21	17	47	1.82
2950036--2950106	33	2.2	33	92	0	115	47	18	22	11	1.80
2950483--2950675	20	9.6	20	85	5	246	18	19	27	34	1.95
2953106--2953160	12	4.6	12	79	0	65	14	16	45	23	1.84
2953216--2953274	2	29.5	2	100	0	118	50	0	0	49	1.00
2953297--2953340	13	3.5	13	93	3	72	13	15	52	18	1.75
2953364--2953389	6	4.3	6	100	0	52	0	69	15	15	1.20
2955403--2955445	3	14.3	3	100	0	86	65	0	0	34	0.93
2956473--2956841	20	18.5	20	85	4	458	34	26	18	20	1.96
2957515--2957561	24	2.0	24	87	8	69	25	14	21	38	1.92
2957736--2957760	12	2.1	12	100	0	50	72	0	28	0	0.86
2960063--2960516	19	25.8	19	74	18	405	46	18	19	14	1.83
2960063--2960437	33	10.8	33	73	17	198	46	18	20	13	1.83
2960063--2960508	52	8.5	51	81	11	351	47	18	19	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2960044--2960508	229	2.0	229	99	0	921	47	19	19	14	1.83
2960149--2960516	33	10.5	33	72	19	182	47	18	19	14	1.83
2960523--2960605	20	4.6	19	81	15	113	14	24	18	43	1.87
2960712--2960748	14	2.6	14	91	0	65	45	21	0	32	1.52
2960743--2960815	12	6.0	12	67	20	53	57	16	1	24	1.47
2960729--2960801	38	1.9	38	97	0	137	53	16	1	28	1.51
2962617--2962751	19	7.6	19	75	16	101	45	25	18	10	1.81
2962673--2962729	14	3.7	14	72	20	51	45	26	19	8	1.79
2962654--2962746	33	2.8	33	88	0	150	47	23	19	9	1.79
2962617--2962751	52	2.5	54	77	18	149	45	25	18	10	1.81
2962747--2962875	19	7.3	19	75	17	125	8	17	28	45	1.77
2962747--2962838	33	2.8	33	93	3	150	7	18	28	45	1.76
2962919--2963483	93	6.1	93	99	0	1116	46	18	12	21	1.83
2962919--2963483	185	3.0	186	99	0	1116	46	18	12	21	1.83
2962919--2963483	278	2.0	278	100	0	1130	46	18	12	21	1.83
2965190--2965279	14	5.7	14	74	23	81	42	23	25	8	1.83
2965182--2965296	33	3.5	33	95	0	212	45	20	24	9	1.81
2965189--2965301	19	6.8	18	72	23	88	43	22	24	9	1.83
2965313--2965367	14	3.6	14	73	21	56	9	25	23	41	1.83
2965297--2965367	33	2.2	33	94	0	124	8	22	25	43	1.81
2965308--2965389	33	2.5	33	89	2	119	9	25	21	42	1.84
2965320--2965408	20	4.8	20	72	19	75	12	24	19	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2965488--2965558	33	2.2	33	92	0	115	47	18	22	11	1.80
2965740--2965794	22	2.5	22	81	0	74	20	16	40	23	1.91
2965940--2966133	20	9.6	20	82	5	221	19	19	25	35	1.95
2965940--2966133	60	3.2	60	83	0	253	19	19	25	35	1.95
2966126--2966202	21	3.7	20	70	13	57	27	16	23	32	1.96
2966188--2966239	20	2.6	20	96	0	95	21	13	26	38	1.90
2972611--2972671	21	3.0	21	81	13	74	34	22	11	31	1.90
2972603--2972700	20	4.8	20	74	17	76	27	23	13	35	1.92
2972607--2972747	40	3.5	40	76	4	117	29	21	12	35	1.91
2972880--2972919	16	2.7	15	85	11	55	27	5	0	67	1.11
2973659--2973712	24	2.2	24	93	0	90	20	18	20	40	1.91
2976258--2976405	64	2.3	64	91	1	235	52	16	2	28	1.55
2976386--2976420	13	2.6	14	86	9	54	57	17	0	25	1.40
2977107--2980296	799	4.0	800	97	0	5823	33	17	18	30	1.94
2981158--2981270	21	5.4	21	76	6	86	23	19	36	21	1.95
2981158--2981276	42	2.8	42	87	0	148	23	18	36	21	1.95
2983793--2983846	22	2.5	22	84	0	72	25	18	35	20	1.95
2984268--2984315	20	2.4	20	78	0	51	16	12	20	50	1.78
2984317--2984361	21	2.1	21	95	0	81	37	13	24	24	1.91
2987740--2987774	12	2.9	12	91	0	52	37	25	5	31	1.80
2990914--2990970	23	2.4	23	79	2	69	36	8	14	40	1.76
2991725--2992178	112	4.1	111	89	4	688	26	15	13	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2991725--2992178	216	2.1	217	90	4	698	26	15	13	45	1.82
2993707--2993824	60	2.0	60	81	1	139	41	3	21	33	1.70
2995283--2995310	14	2.0	14	100	0	56	35	7	28	28	1.84
2995378--2995978	254	2.4	253	88	8	883	26	11	20	41	1.87
2996306--2996351	18	2.6	18	93	3	76	28	23	6	41	1.79
2999382--2999422	20	2.0	20	86	9	57	39	9	7	43	1.65
2999641--2999675	15	2.3	15	95	0	61	28	31	22	17	1.96
3006171--3006211	20	2.0	20	86	9	57	39	9	4	46	1.58
3006430--3006464	15	2.3	15	100	0	70	34	34	17	14	1.90
3007011--3007045	18	1.9	18	100	0	70	25	34	28	11	1.91
3008422--3008466	16	2.8	17	77	12	51	46	2	20	31	1.62
3008921--3008969	25	2.0	25	91	0	80	20	14	28	36	1.92
3010654--3010748	14	5.9	14	83	13	73	25	38	27	8	1.84
3010676--3010729	20	2.7	20	94	0	99	25	37	27	9	1.87
3010676--3010729	10	5.4	10	79	16	67	25	37	27	9	1.87
3010730--3010812	33	2.6	33	86	3	107	24	28	37	9	1.87
3010880--3010957	10	7.5	10	74	8	57	8	32	32	26	1.87
3010845--3010936	33	2.8	32	83	6	105	10	34	28	26	1.90
3010890--3010941	23	2.5	20	76	14	59	11	32	30	25	1.91
3010857--3010957	33	3.2	32	85	4	107	10	32	29	26	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!