genome.fa.s7725.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007725.1 Hibiscus syriacus cultivar Beakdansim tig00109972_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3026330

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  2  of  14  ( 1646 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226650--226716	21	3.2	21	91	4	100	38	19	28	13	1.89
227646--227727	37	2.2	38	93	2	139	41	35	8	14	1.77
229196--229236	11	3.9	11	81	12	59	21	9	14	53	1.70
229192--229240	20	2.5	20	96	0	89	24	10	14	51	1.73
229196--229243	11	4.5	11	79	10	55	22	12	12	52	1.73
230019--230047	9	3.3	9	95	4	51	24	13	17	44	1.85
230565--230596	15	2.2	15	94	5	57	50	0	0	50	1.00
230555--230638	27	3.0	27	68	23	66	48	1	2	47	1.22
230582--230638	21	2.8	20	71	10	53	43	1	3	50	1.29
230580--230679	41	2.4	41	80	9	107	46	3	3	48	1.33
230644--230688	22	2.1	22	88	12	67	55	4	0	40	1.20
239309--239386	3	27.0	3	77	12	83	58	0	0	41	0.98
239309--239382	27	2.9	25	78	13	96	58	0	0	41	0.98
239309--239382	18	4.3	17	85	13	98	58	0	0	41	0.98
239894--240169	36	7.6	37	74	2	272	38	11	18	31	1.87
239894--240169	73	3.8	73	96	0	507	38	11	18	31	1.87
239898--240169	37	7.4	36	74	2	265	38	11	18	31	1.86
240876--240952	22	3.5	22	89	7	120	40	14	10	35	1.80
250164--250220	28	2.1	28	83	6	73	64	1	3	29	1.20
252283--252372	3	31.0	3	78	10	89	57	0	0	42	0.98
254170--254236	23	2.9	23	84	0	89	25	25	25	23	2.00
255667--255700	17	2.1	16	88	5	50	14	8	0	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
262052--262089	20	1.9	20	89	10	60	18	15	0	65	1.27
262052--262095	20	2.2	20	84	11	56	18	18	0	63	1.31
265926--265959	17	2.1	16	88	5	50	14	8	0	76	1.01
267216--267372	64	2.5	64	76	9	158	25	19	21	33	1.97
270532--270645	33	3.5	33	81	2	131	32	37	9	20	1.85
270671--270764	33	2.8	33	74	6	84	30	36	9	23	1.87
272679--272753	31	2.4	31	79	0	87	26	10	17	45	1.81
274198--274230	16	1.9	17	88	11	50	36	0	3	60	1.12
274193--274232	17	2.3	19	79	16	50	32	0	2	65	1.06
275527--275607	35	2.3	32	77	20	83	25	8	9	55	1.61
279519--279567	20	2.5	20	100	0	98	32	24	4	38	1.74
280333--280376	21	2.2	19	84	8	52	34	4	6	54	1.47
283311--283402	33	2.8	33	86	0	130	35	33	5	25	1.79
284620--284663	21	2.2	19	84	8	52	34	4	6	54	1.47
287590--287681	33	2.8	33	88	0	139	34	34	5	25	1.79
288457--289041	315	1.9	313	96	1	1091	30	11	20	38	1.87
290052--290097	19	2.5	18	89	3	65	26	6	0	67	1.15
290407--290442	14	2.5	15	95	4	65	41	0	0	58	0.98
290445--290490	22	2.1	22	100	0	92	36	0	13	50	1.41
290422--290753	54	6.1	54	97	0	628	35	0	11	52	1.38
290554--290596	22	2.0	22	95	0	77	34	0	11	53	1.37
290608--290650	22	2.0	22	95	0	77	34	0	11	53	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290422--291036	108	5.7	108	81	10	629	34	0	12	52	1.40
290662--290704	22	2.0	22	100	0	86	34	0	13	51	1.42
290580--291036	188	2.4	188	97	0	860	34	0	13	52	1.41
290422--291036	134	4.6	133	79	12	620	34	0	12	52	1.40
290796--290838	22	2.0	22	95	0	77	37	0	11	51	1.39
290768--290941	54	3.2	54	96	0	321	34	0	13	51	1.42
290850--290892	22	2.0	22	95	0	77	32	0	16	51	1.45
290895--290942	22	2.4	18	73	23	51	33	0	14	52	1.42
290984--291026	22	2.0	22	95	0	77	37	0	11	51	1.39
291051--291109	31	1.9	31	85	0	82	44	8	5	42	1.57
292949--292992	22	2.0	21	83	12	54	40	11	9	38	1.73
293018--293082	23	2.8	23	100	0	130	33	4	21	40	1.74
293498--293570	23	3.2	23	92	0	119	34	5	21	38	1.77
293977--294049	23	3.2	23	88	0	110	34	5	20	39	1.76
292586--296359	479	7.8	478	93	1	6206	41	7	10	40	1.67
293977--294074	46	2.1	45	81	7	108	34	6	17	41	1.74
294451--294523	23	3.2	23	94	0	119	35	5	19	39	1.75
294929--294992	23	2.8	23	92	0	101	35	4	21	37	1.75
295408--295480	23	3.2	23	90	0	101	36	4	20	38	1.72
295823--295867	22	2.1	21	83	4	54	42	8	11	37	1.72
292586--296359	957	3.9	956	93	2	6194	41	7	10	40	1.67
295886--295958	23	3.2	23	96	0	128	35	8	20	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298392--298436	23	2.0	23	86	8	65	51	8	11	28	1.68
300253--300297	20	2.2	20	84	0	54	24	22	17	35	1.95
300418--300499	29	2.8	29	88	1	119	32	13	10	42	1.79
308302--308341	21	1.9	21	89	0	62	10	25	40	25	1.86
314674--314755	29	2.8	29	92	1	128	32	14	10	41	1.81
318456--318647	106	1.8	106	87	2	287	34	26	18	21	1.96
318945--319049	37	2.9	37	94	1	185	23	21	14	40	1.90
319055--319152	33	2.9	34	78	4	119	41	20	10	27	1.84
324440--324508	21	3.3	21	100	0	138	27	20	18	33	1.96
325243--325539	106	2.8	106	90	1	443	35	25	17	21	1.95
325837--325941	37	2.9	37	91	1	167	25	20	13	40	1.89
325951--326076	33	3.6	33	73	11	108	42	16	10	30	1.81
328889--329186	106	2.8	106	92	1	481	34	26	18	20	1.96
329504--329569	21	3.4	21	66	25	63	24	19	13	42	1.87
329484--329588	37	2.9	37	91	7	178	23	20	14	40	1.89
329594--329772	73	2.6	71	82	7	224	40	18	11	29	1.85
329594--329762	35	4.8	35	84	5	218	42	18	10	29	1.83
331487--331518	7	4.7	7	96	3	57	37	0	0	62	0.95
332362--332396	15	2.2	16	90	5	54	31	2	0	65	1.07
333313--333347	16	2.2	16	89	0	52	77	0	11	11	1.00
334860--334884	2	12.5	2	100	0	50	52	0	0	48	1.00
335436--336632	106	11.3	104	89	3	1673	22	18	25	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335436--336632	422	2.8	422	91	1	1884	22	18	25	33	1.97
337449--337479	16	1.9	16	93	0	53	0	16	0	83	0.64
347816--347865	16	3.1	16	82	5	57	74	0	12	14	1.09
348079--348113	2	17.5	2	100	0	70	51	0	0	48	1.00
349227--349264	20	1.9	20	88	0	58	23	34	31	10	1.89
349919--350197	30	9.3	30	96	0	497	22	22	24	30	1.99
350470--350537	2	34.0	2	96	0	127	48	0	1	50	1.10
354876--354911	2	17.5	2	94	5	63	50	2	0	47	1.15
355382--355436	21	2.5	23	80	14	71	25	23	16	34	1.95
358540--358570	15	2.1	15	100	0	62	12	12	6	67	1.40
361420--361488	35	2.0	35	100	0	138	39	20	8	31	1.83
365253--365287	18	1.9	18	94	0	61	28	31	17	22	1.96
365369--365407	19	2.1	19	90	0	60	38	23	0	38	1.55
372919--372974	15	3.7	15	82	0	58	12	7	53	26	1.64
372953--372996	18	2.4	18	85	7	54	15	4	50	29	1.64
373099--373151	21	2.5	21	81	0	61	13	15	56	15	1.67
373115--373154	21	1.9	21	89	0	62	10	12	57	20	1.63
390134--390243	3	37.0	3	84	12	147	30	0	0	68	0.96
391684--391771	23	3.8	22	72	14	70	28	7	3	60	1.41
391775--391806	2	16.0	2	93	0	55	53	0	0	46	1.00
391819--392198	147	2.6	147	91	2	615	41	5	6	46	1.53
391819--392271	147	3.1	144	87	6	519	40	6	6	47	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
392279--392315	18	2.1	18	100	0	74	67	5	10	16	1.38
394258--394339	43	1.9	43	92	0	137	31	10	21	35	1.89
394490--394530	14	3.1	14	79	13	50	14	17	17	51	1.77
401851--402032	91	2.0	90	83	10	226	30	24	17	28	1.97
407837--407917	24	3.5	24	70	20	75	22	24	22	30	1.99
409990--410066	24	3.6	22	77	14	74	29	19	25	24	1.98
413852--413936	45	1.9	43	88	9	127	28	24	18	28	1.98
415372--415426	21	2.6	21	91	2	83	32	14	14	38	1.87
415731--416304	121	5.1	109	78	15	510	38	16	17	27	1.91
415969--416458	121	3.9	122	77	14	455	40	15	16	27	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14