genome.fa.s7725.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007725.1 Hibiscus syriacus cultivar Beakdansim tig00109972_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3026330

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  5  of  14  ( 1646 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
851725--851843	14	8.1	14	72	17	66	52	4	8	34	1.51
851715--851864	36	4.1	36	76	13	173	53	3	8	35	1.47
851727--851864	14	10.1	13	69	25	65	53	3	7	34	1.48
851818--851871	22	2.4	24	84	12	78	51	1	5	40	1.36
852095--852143	16	3.1	16	81	0	62	38	16	26	18	1.91
853412--853478	28	2.4	28	97	0	125	29	14	14	40	1.87
868410--868465	30	1.9	30	82	7	71	53	25	7	14	1.66
881672--881700	11	2.7	11	94	5	51	62	0	37	0	0.96
885671--885715	15	3.1	14	81	12	56	66	2	2	28	1.15
885669--885715	14	3.4	13	82	11	58	63	2	2	31	1.18
885797--885987	20	9.6	20	73	10	124	34	26	13	25	1.93
886733--886766	12	2.8	12	90	0	50	55	29	0	14	1.40
886892--886945	24	2.2	24	90	0	81	22	18	18	40	1.91
889208--889248	12	3.4	12	93	0	64	51	24	4	19	1.66
889534--889626	34	2.7	34	83	0	123	41	22	20	15	1.89
889612--889649	20	1.9	20	88	0	58	34	18	18	28	1.95
889704--889745	20	2.1	20	100	0	84	14	14	19	52	1.75
889806--889854	25	2.0	25	95	0	89	26	8	20	44	1.79
890235--890287	24	2.2	24	82	0	61	33	3	11	50	1.56
890589--890675	39	2.2	39	97	0	165	47	20	14	17	1.83
890902--890973	34	2.1	34	82	5	83	23	25	20	30	1.99
890948--890985	20	1.9	20	100	0	76	13	18	26	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
892492--892544	21	2.5	22	82	14	67	20	26	33	18	1.96
892512--892604	21	4.4	21	74	8	82	21	21	34	22	1.97
892512--892610	42	2.4	42	75	11	103	22	20	34	23	1.97
894771--894817	20	2.3	20	92	0	76	51	19	21	8	1.73
894814--894860	20	2.4	20	92	3	78	12	17	21	48	1.79
895243--895279	15	2.4	16	86	13	51	16	8	2	72	1.19
895729--895771	22	2.0	22	86	4	61	6	13	2	76	1.08
896134--896199	30	2.2	29	86	7	89	36	13	12	37	1.82
896111--896199	29	3.1	28	79	10	99	35	12	10	41	1.76
898085--898154	21	3.3	20	73	11	59	35	15	22	25	1.94
908374--908429	16	3.4	16	77	5	58	33	7	21	37	1.81
909025--909069	22	2.0	23	86	4	65	28	2	24	44	1.66
912048--912105	28	2.1	27	83	3	71	50	1	1	46	1.22
916255--916353	49	2.0	49	100	0	198	30	20	14	35	1.92
919712--919805	35	2.7	35	85	3	118	43	23	1	31	1.61
920605--920682	35	2.2	36	90	2	122	33	0	23	43	1.54
924695--924740	21	2.2	21	92	0	74	30	17	26	26	1.97
924701--924748	21	2.3	21	100	0	96	27	14	29	29	1.95
924786--924852	20	3.3	20	79	4	89	41	17	23	16	1.89
924796--924871	21	3.7	21	80	3	100	40	18	25	15	1.90
924783--924871	41	2.2	41	100	0	178	41	16	24	16	1.89
924798--924932	41	3.3	41	82	6	132	38	20	21	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
924860--924954	20	4.7	20	80	2	91	34	24	17	23	1.96
925142--925185	22	2.0	22	86	0	61	22	43	13	20	1.87
925449--925486	20	1.9	20	88	0	58	13	15	21	50	1.78
926803--926847	18	2.5	18	88	0	72	26	44	15	13	1.83
927340--927395	20	2.8	20	81	2	69	39	21	23	16	1.92
927368--927439	33	2.4	31	86	13	98	45	20	19	13	1.84
927451--927508	14	3.9	14	77	16	62	12	17	22	48	1.80
927446--927524	32	2.4	33	93	2	133	12	18	21	46	1.82
927508--927558	20	2.6	19	84	6	75	15	25	21	37	1.93
929430--929465	14	2.6	14	90	0	54	30	0	22	47	1.52
929572--929625	14	3.5	14	73	22	54	50	20	18	11	1.77
929553--929630	33	2.4	33	88	0	111	43	21	21	12	1.86
929649--929705	20	2.8	20	86	0	78	17	22	17	42	1.89
930743--930801	24	2.5	24	82	0	73	28	16	18	35	1.93
930976--931000	12	2.1	12	100	0	50	72	0	28	0	0.86
933295--933353	19	3.4	19	68	22	65	44	18	23	13	1.86
933518--933550	14	2.4	14	94	0	57	45	24	0	30	1.53
937068--937166	33	3.0	33	87	1	144	39	25	24	11	1.88
937043--937265	19	12.1	19	81	11	250	44	21	21	12	1.85
937043--937265	58	4.0	57	79	12	232	44	21	21	12	1.85
937272--937328	20	2.8	20	81	7	80	10	17	22	49	1.77
937847--937960	20	5.7	20	81	6	113	25	17	24	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
937949--938041	41	2.3	41	98	0	141	17	23	18	40	1.90
937847--937981	61	2.2	61	82	2	164	23	18	23	34	1.96
937949--938041	21	4.6	20	79	4	105	17	23	18	40	1.90
937868--938001	61	2.2	62	81	6	157	21	18	21	38	1.94
945266--945297	15	2.1	15	94	0	55	9	25	12	53	1.68
947584--947621	20	2.0	19	90	10	60	47	10	23	18	1.79
954113--954170	2	29.0	2	100	0	116	50	0	0	50	1.00
959680--959721	16	2.6	16	100	0	84	33	0	45	21	1.52
969580--969604	5	5.0	5	100	0	50	20	20	20	40	1.92
972941--973055	36	3.2	36	78	9	128	32	14	11	41	1.82
973053--973326	140	2.0	138	86	1	377	30	28	14	25	1.95
973647--973687	12	3.3	13	76	13	50	34	4	0	60	1.18
973647--973697	15	3.4	15	75	17	52	33	5	0	60	1.21
974452--974576	35	3.7	32	83	10	128	21	20	20	36	1.95
974482--974591	36	3.1	36	87	7	170	17	22	19	40	1.91
974472--974576	35	3.0	35	86	8	158	19	23	20	37	1.94
975915--976053	35	3.9	35	85	5	181	20	21	18	39	1.92
975915--976058	71	2.0	71	88	7	213	19	21	18	40	1.91
978804--978871	32	2.1	32	83	2	82	33	5	7	52	1.53
978786--979074	144	2.0	144	98	0	560	39	6	6	48	1.55
978948--979015	32	2.1	32	83	2	82	33	5	7	52	1.53
980225--980323	3	33.0	3	100	0	198	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
980326--980382	3	19.0	3	100	0	114	33	0	66	0	0.92
980397--980501	53	2.0	53	94	0	183	45	6	15	32	1.72
982870--982908	20	2.0	20	100	0	78	46	5	23	25	1.73
982873--982918	20	2.6	18	86	13	60	45	6	21	26	1.76
983049--983124	38	2.0	37	82	14	93	40	3	3	51	1.39
1008625--1008697	18	4.1	18	72	15	62	75	2	16	5	1.11
1008618--1008681	18	3.4	18	70	19	51	76	3	14	6	1.10
1008667--1008724	27	2.2	25	78	6	62	70	0	24	5	1.07
1009886--1010235	51	6.9	51	95	0	610	31	15	26	26	1.96
1010150--1010503	56	6.4	56	85	5	347	28	16	24	30	1.96
1021012--1021070	30	2.0	30	93	0	100	33	22	15	28	1.94
1022165--1022227	33	1.9	33	100	0	126	46	9	17	26	1.79
1030073--1030297	36	6.3	36	92	1	337	18	27	23	30	1.97
1032179--1032220	21	2.0	21	85	0	57	30	19	16	33	1.94
1033017--1033117	37	2.7	37	85	0	139	37	19	14	27	1.91
1033458--1033491	2	17.0	2	100	0	68	50	0	0	50	1.00
1036125--1036149	8	3.1	8	100	0	50	40	0	0	60	0.97
1037574--1037614	18	2.2	19	86	4	57	60	0	9	29	1.28
1037580--1037621	17	2.3	18	84	8	50	61	2	9	26	1.39
1037752--1037809	16	3.5	16	73	4	53	65	6	8	18	1.43
1039517--1039605	3	29.0	3	81	10	92	65	3	0	31	1.09
1039520--1039599	21	3.9	21	83	8	110	65	3	0	31	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1039768--1040021	40	5.9	40	70	14	125	24	19	33	22	1.97
1039812--1040166	134	2.7	132	88	3	530	24	18	32	23	1.97
1040375--1040602	92	2.5	91	80	6	282	44	14	12	28	1.82
1040543--1040707	29	5.6	29	82	9	163	43	13	13	29	1.82
1040703--1040854	66	2.3	64	80	8	155	45	15	10	28	1.79
1040937--1040995	31	1.9	31	93	3	102	40	13	15	30	1.86
1041033--1041170	36	3.8	36	83	3	172	34	11	18	34	1.87
1041109--1041448	106	3.3	101	79	10	373	38	12	17	32	1.86
1041146--1041457	106	3.0	104	80	8	380	40	11	16	31	1.83
1041417--1041559	36	4.1	35	79	9	150	41	11	16	31	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14