genome.fa.s7725.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007725.1 Hibiscus syriacus cultivar Beakdansim tig00109972_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3026330

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  4  of  14  ( 1646 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
609895--609956	27	2.3	27	83	10	74	27	27	0	45	1.54
610094--610175	13	6.0	14	73	20	59	41	3	6	48	1.45
610106--610254	13	11.5	13	68	16	96	43	2	5	48	1.37
610108--610253	40	3.8	40	73	17	123	43	2	5	49	1.37
610187--610255	2	35.5	2	72	16	56	47	1	1	49	1.19
610205--610253	19	2.7	19	76	17	59	46	2	0	51	1.12
616287--616332	24	1.9	24	90	0	74	50	0	10	39	1.38
619828--619865	20	1.9	20	88	0	58	50	0	0	50	1.00
620142--620176	2	17.5	2	93	0	61	51	2	0	45	1.16
620138--620172	8	4.4	8	96	0	52	51	5	0	42	1.25
621133--621286	67	2.3	67	86	2	220	28	16	13	40	1.87
622695--622737	22	2.0	21	95	4	77	4	9	6	79	1.06
623293--623333	3	13.7	3	100	0	82	31	0	0	68	0.90
623450--623476	4	6.8	4	100	0	54	22	0	0	77	0.76
623745--623770	2	13.0	2	100	0	52	50	0	0	50	1.00
630638--630759	45	2.7	44	80	1	136	25	18	27	29	1.98
637266--637305	21	2.0	21	90	5	64	40	17	17	25	1.91
642452--643085	182	3.5	182	88	2	939	28	15	11	44	1.82
643017--643215	93	2.1	94	92	3	339	24	16	13	46	1.82
643111--643400	113	2.6	113	93	0	483	26	14	12	46	1.80
642954--643328	206	1.8	207	93	0	653	25	16	13	44	1.83
644825--644874	20	2.5	20	93	0	82	34	18	0	48	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
644831--644874	10	4.4	10	79	0	52	34	20	0	45	1.51
645676--645751	40	1.9	40	91	5	127	34	21	14	30	1.93
645982--646026	14	3.2	14	93	0	81	6	15	28	48	1.70
646207--646250	23	1.9	23	95	0	79	13	6	15	63	1.49
646306--646331	10	2.6	10	100	0	52	50	19	19	11	1.77
648528--648583	23	2.4	23	93	0	94	26	16	16	41	1.88
652671--652742	29	2.4	30	93	2	119	20	38	27	12	1.89
652790--652844	10	5.5	10	75	16	60	27	38	23	10	1.88
652789--652844	20	2.8	20	100	0	112	26	37	25	10	1.88
652849--652915	33	2.1	32	86	5	91	28	22	38	10	1.87
652948--653037	33	2.8	32	86	1	108	8	35	27	27	1.87
653047--653122	29	2.6	29	100	0	152	10	25	44	19	1.82
658602--658645	19	2.3	19	88	0	61	36	29	11	22	1.89
658690--658818	20	6.6	19	77	16	113	43	25	13	17	1.85
658932--658980	21	2.3	21	89	6	73	20	42	16	20	1.89
661449--661518	21	3.3	21	84	4	88	22	35	20	21	1.96
661449--661540	42	2.2	42	84	3	114	20	36	21	20	1.95
662904--663011	51	2.1	51	89	1	164	26	1	16	54	1.52
663069--663141	20	3.7	20	88	3	112	41	21	20	16	1.90
663488--663528	18	2.3	18	91	0	64	17	2	26	53	1.56
665794--665845	24	2.2	24	82	0	59	40	17	15	26	1.89
665957--665990	12	2.8	12	90	0	50	14	0	29	55	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
666585--666623	15	2.5	15	83	4	51	66	0	5	28	1.12
666760--666806	18	2.5	19	89	6	78	31	10	23	34	1.89
666760--666947	20	9.4	20	74	14	97	25	13	22	37	1.91
666773--666850	42	1.9	39	89	7	120	34	11	19	34	1.88
666841--667051	60	3.5	60	76	12	177	20	15	25	38	1.91
666841--666988	80	1.9	80	91	0	242	19	16	22	40	1.91
666841--667025	80	2.3	80	80	9	182	20	16	24	38	1.92
666979--667047	20	3.5	20	79	16	81	24	13	31	30	1.93
668023--668073	24	2.1	24	82	7	59	19	9	11	58	1.60
668235--668325	24	3.8	24	74	11	87	12	15	15	57	1.66
671578--671612	16	2.2	16	100	0	70	31	14	17	37	1.89
675096--675185	29	3.1	29	76	10	87	40	8	8	42	1.67
676714--676780	29	2.3	29	80	9	75	53	7	11	26	1.64
681463--681576	52	2.2	50	78	3	120	38	8	8	43	1.67
682752--682825	25	2.9	25	82	11	80	39	2	1	56	1.22
682788--682844	28	2.1	28	87	9	84	42	5	0	52	1.24
687710--688067	131	2.7	131	86	1	477	39	16	10	32	1.83
690002--690029	3	9.3	3	100	0	56	67	0	0	32	0.91
690492--690518	4	6.8	4	100	0	54	25	0	0	74	0.83
691265--691357	43	2.2	43	84	0	114	32	17	12	37	1.88
691286--691375	43	2.1	43	82	0	108	33	22	12	32	1.91
692944--693048	40	2.6	40	86	4	149	54	7	13	24	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
693372--693412	21	2.0	21	95	0	73	46	0	12	41	1.41
693755--693807	21	2.5	21	73	11	63	43	5	1	49	1.37
696461--696739	137	2.0	136	96	0	513	32	23	10	32	1.89
697114--697159	20	2.3	20	85	7	58	36	13	17	32	1.88
700517--700552	18	2.0	18	88	0	54	52	0	16	30	1.44
701688--701782	24	4.0	24	74	10	86	22	14	16	46	1.84
705161--705196	18	2.0	18	88	0	54	52	0	16	30	1.44
707052--707094	3	14.7	3	95	4	79	65	0	0	34	0.93
711952--711979	3	9.3	3	100	0	56	0	0	32	67	0.91
724312--724378	34	2.0	34	85	5	91	46	10	4	38	1.59
724352--724757	190	2.1	192	85	5	565	45	8	5	39	1.58
728151--728651	188	2.7	188	88	2	711	46	8	4	40	1.55
728644--728688	13	3.6	13	76	11	58	53	13	2	31	1.52
731888--731968	28	2.9	28	87	7	119	33	17	34	14	1.90
736373--736412	19	2.2	17	86	8	53	42	7	0	50	1.30
736869--736902	14	2.4	14	90	0	50	58	17	0	23	1.38
738310--738452	62	2.3	64	82	4	166	32	22	21	23	1.98
741457--741516	8	7.4	8	75	16	52	70	3	1	25	1.12
741510--741549	16	2.6	15	80	7	53	75	7	0	17	1.03
741459--741549	31	3.0	30	76	19	91	71	5	1	21	1.13
741458--741548	10	9.2	9	72	24	60	72	4	1	21	1.09
741654--741680	5	5.4	5	100	0	54	81	0	0	18	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
753322--753350	13	2.3	13	94	5	51	68	0	0	31	0.89
753369--753405	17	2.2	17	86	13	51	37	8	0	54	1.30
762057--762086	4	7.5	4	100	0	60	76	0	0	23	0.78
769120--769160	3	13.7	3	89	0	64	4	34	26	34	1.78
776753--776828	20	3.9	19	75	16	66	27	19	11	40	1.87
777731--777776	24	1.9	24	95	0	83	28	19	17	34	1.94
780327--780375	19	2.5	20	83	6	64	42	14	18	24	1.87
780276--780454	82	2.2	83	82	2	227	34	17	20	27	1.95
780718--781120	207	1.9	207	92	3	677	41	23	8	26	1.83
782226--782360	21	6.4	21	87	0	153	20	21	39	19	1.93
782304--782375	21	3.4	21	92	0	117	26	25	30	18	1.98
782772--782821	21	2.4	21	89	0	73	34	36	14	16	1.88
782936--783033	42	2.4	42	85	1	135	17	18	34	29	1.94
784534--784578	20	2.2	20	88	0	63	62	15	8	13	1.54
785189--785233	20	2.2	20	84	0	63	24	8	20	46	1.78
790089--790127	14	2.8	14	84	11	53	20	0	2	76	0.90
790570--790620	15	3.6	14	76	12	50	47	3	1	47	1.32
790559--790623	28	2.2	28	81	5	76	47	3	3	46	1.33
790705--790759	16	3.2	16	80	10	56	56	1	1	40	1.21
790714--790795	43	1.9	43	82	5	103	46	2	0	51	1.14
800322--800389	27	2.6	27	95	4	122	41	16	11	30	1.84
808330--808422	47	2.0	46	87	2	132	26	21	4	47	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
833584--833630	23	2.0	23	84	8	60	34	4	0	61	1.15
839689--839752	20	3.2	20	65	12	60	43	14	9	32	1.77
843690--843722	2	16.5	2	100	0	66	51	0	0	48	1.00
847413--847469	22	2.7	21	84	7	71	31	14	24	29	1.94
847769--847879	57	2.0	56	96	1	204	40	9	14	35	1.79
848005--848905	81	11.1	81	89	0	1311	35	9	21	33	1.86
849594--850566	2	490.0	2	66	21	297	40	5	2	51	1.39
850976--851021	24	1.9	24	82	8	58	34	13	2	50	1.53
850667--851685	547	1.9	544	92	1	1709	32	12	6	48	1.66
851715--851865	22	6.9	22	73	22	124	52	3	7	35	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14