genome.fa.s7754.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007754.1 Hibiscus syriacus cultivar Beakdansim tig00110020_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3698414

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  12  of  15  ( 1710 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2660382--2660436	24	2.3	24	87	0	74	25	45	14	14	1.83
2660382--2660436	12	4.6	12	79	0	56	25	45	14	14	1.83
2661779--2661830	24	2.2	24	82	0	59	36	21	19	23	1.95
2662660--2662724	20	3.2	20	95	0	112	23	20	27	29	1.98
2662711--2662885	20	8.6	20	80	2	206	20	19	20	39	1.93
2662698--2662826	40	3.2	38	77	11	141	20	18	21	39	1.92
2662731--2662882	61	2.5	61	97	0	286	21	19	19	40	1.92
2662711--2662885	81	2.2	81	85	2	226	20	19	20	39	1.93
2663659--2663712	21	2.5	21	75	3	63	27	0	7	64	1.20
2664707--2664746	10	4.0	10	84	12	55	32	27	0	40	1.57
2664789--2664829	18	2.3	18	91	4	66	29	4	2	63	1.28
2664885--2665112	111	2.1	111	92	0	375	36	7	9	46	1.65
2667942--2668019	29	2.7	29	87	2	102	50	5	8	35	1.56
2671025--2671103	37	2.1	37	97	0	149	35	18	13	31	1.91
2687890--2687933	21	2.1	21	83	8	54	25	0	2	72	0.96
2688347--2688386	2	20.0	2	100	0	80	50	0	0	50	1.00
2698759--2698803	18	2.5	18	100	0	90	48	0	6	44	1.29
2699792--2699860	21	3.4	19	84	8	75	21	21	21	34	1.97
2699801--2699884	21	4.0	21	89	6	109	21	23	20	34	1.97
2699791--2699887	42	2.4	39	78	13	106	24	22	19	32	1.97
2700544--2700654	21	5.3	21	96	0	195	36	24	21	17	1.94
2700544--2700795	42	5.8	42	85	8	342	35	21	23	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2700544--2700795	63	3.9	63	83	9	342	35	21	23	19	1.96
2700629--2700688	30	2.0	30	90	0	93	35	16	26	21	1.95
2700659--2700795	21	6.5	21	91	0	211	35	18	24	21	1.96
2700555--2700768	114	1.9	114	93	0	365	35	20	23	20	1.96
2701249--2701324	38	2.0	38	100	0	152	21	26	23	28	1.99
2701978--2702039	28	2.2	28	80	5	72	50	1	6	41	1.38
2708293--2708323	2	15.5	2	100	0	62	51	0	0	48	1.00
2710336--2710391	27	2.1	27	93	0	94	21	37	1	39	1.64
2713989--2714052	24	2.6	26	77	22	68	53	9	10	26	1.66
2715044--2715114	20	3.5	20	90	0	115	46	9	21	22	1.80
2729360--2729462	48	2.1	48	94	0	179	33	24	17	25	1.96
2729769--2729796	2	14.0	2	100	0	56	50	0	0	50	1.00
2733060--2733342	153	1.8	153	84	0	386	26	20	21	31	1.98
2736006--2736049	16	2.8	16	100	0	88	6	29	20	43	1.78
2739128--2739255	63	2.0	63	96	0	238	28	22	25	24	2.00
2739322--2739598	48	5.8	48	72	5	184	37	22	15	24	1.92
2739319--2739598	96	2.9	96	82	3	332	37	22	15	24	1.93
2740565--2740618	20	2.7	20	79	0	54	37	27	11	24	1.89
2740605--2740755	57	2.6	57	97	0	284	35	21	15	27	1.93
2740804--2740852	19	2.5	19	83	3	53	24	14	30	30	1.94
2747572--2747609	20	1.9	20	84	10	51	10	42	13	34	1.78
2749690--2749822	66	2.0	66	86	0	185	47	6	9	36	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2751988--2752023	19	1.9	19	88	5	56	69	5	0	25	1.10
2768343--2768417	24	3.0	24	81	11	80	44	0	0	56	0.99
2768344--2768417	21	3.5	22	78	12	75	43	0	0	56	0.99
2768344--2768404	3	20.7	3	77	9	63	40	0	0	59	0.98
2770043--2770085	22	1.9	22	86	13	61	41	4	0	53	1.21
2771158--2771365	101	2.1	100	78	5	224	35	8	17	39	1.79
2774316--2774346	5	6.0	5	92	7	53	61	0	0	38	0.96
2774329--2774409	26	3.2	24	75	16	76	48	4	1	45	1.32
2774735--2774797	23	2.8	22	77	18	58	44	0	4	50	1.23
2774745--2774797	22	2.3	24	84	9	67	41	0	5	52	1.25
2775386--2775436	23	2.2	23	89	0	84	13	23	21	41	1.89
2775893--2775930	20	1.9	20	88	0	58	36	2	18	42	1.64
2779870--2779903	16	2.1	16	100	0	68	23	5	26	44	1.76
2783249--2783283	9	3.9	9	89	10	54	45	0	0	54	0.99
2783729--2783793	23	2.8	22	76	4	58	38	1	4	55	1.30
2785360--2785660	96	3.0	97	83	4	370	36	15	19	29	1.92
2791702--2791757	24	2.3	24	87	0	85	44	12	3	39	1.60
2793127--2793261	69	2.0	69	90	0	216	41	28	5	25	1.76
2812453--2812499	22	2.1	22	88	4	67	36	0	8	55	1.31
2813016--2813061	21	2.2	21	84	0	56	26	36	26	10	1.89
2814315--2814380	33	2.0	33	93	0	114	25	28	3	42	1.70
2818562--2818606	23	2.0	23	82	8	56	48	15	22	13	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2820588--2820626	2	19.5	2	100	0	78	48	0	0	51	1.00
2823657--2823690	2	17.0	2	100	0	68	0	50	0	50	1.00
2823690--2823716	2	13.5	2	100	0	54	48	0	0	51	1.00
2846588--2846612	2	12.5	2	100	0	50	0	48	0	52	1.00
2856014--2856054	20	2.0	21	86	9	59	68	17	2	12	1.31
2861871--2861911	17	2.3	17	87	8	55	73	0	0	26	0.84
2862179--2862224	2	23.0	2	100	0	92	50	0	0	50	1.00
2863629--2863682	3	18.0	3	92	7	92	66	0	0	33	0.92
2863846--2864563	76	9.4	76	94	1	1186	34	22	19	23	1.96
2865243--2865296	22	2.5	22	90	0	81	37	11	14	37	1.82
2869756--2869800	9	5.4	9	86	10	53	0	13	0	86	0.57
2869773--2869799	7	3.9	7	100	0	54	0	11	0	88	0.50
2869764--2869813	23	2.2	23	88	0	73	0	18	0	82	0.68
2869764--2869831	8	9.2	8	82	9	58	0	22	0	77	0.76
2869756--2869838	14	6.1	13	74	18	62	0	22	0	77	0.78
2875298--2875339	2	22.0	2	85	9	61	47	0	2	50	1.14
2876296--2876352	3	19.0	3	85	7	80	63	0	0	36	0.95
2876553--2876698	60	2.5	59	81	7	163	32	19	15	31	1.94
2885395--2885469	24	3.1	24	96	0	132	29	30	13	26	1.94
2905243--2905669	190	2.3	189	91	1	678	24	18	20	36	1.95
2914699--2914749	19	2.6	20	90	3	77	43	23	17	15	1.88
2914699--2915036	20	16.6	20	80	6	214	39	20	22	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2914824--2915034	40	5.2	40	83	3	242	36	18	25	18	1.94
2914824--2915034	83	2.6	80	83	4	269	36	18	25	18	1.94
2914803--2915026	103	2.2	103	90	0	340	37	18	25	19	1.94
2915124--2915185	6	10.5	6	98	1	117	32	51	16	0	1.44
2915873--2915939	6	12.0	6	98	1	99	0	17	53	28	1.44
2916046--2916113	20	3.4	20	91	0	100	17	25	20	36	1.94
2916104--2916157	20	2.7	20	88	0	81	12	18	18	50	1.78
2916144--2916318	20	8.6	20	72	10	113	16	20	21	41	1.90
2916014--2916193	100	1.8	100	95	0	324	16	22	19	42	1.89
2916268--2916318	19	2.6	20	90	3	77	15	17	23	43	1.88
2916819--2916868	26	1.9	26	87	0	73	50	4	22	24	1.66
2921548--2921598	26	1.9	27	88	4	77	50	3	23	21	1.65
2924006--2924037	3	10.7	3	100	0	64	65	0	0	34	0.93
2926333--2926441	39	2.8	39	81	0	128	43	0	17	39	1.49
2929915--2929959	23	2.0	23	86	0	63	17	22	11	48	1.78
2930862--2930973	35	3.2	35	85	0	143	41	22	0	34	1.60
2933035--2933144	35	3.1	35	86	0	148	35	0	20	42	1.59
2933937--2933965	14	2.1	14	100	0	58	41	6	6	44	1.58
2934541--2934588	24	2.0	24	95	0	87	25	18	20	35	1.95
2946116--2946156	18	2.3	18	91	4	66	29	4	2	63	1.28
2948365--2948436	26	3.0	24	68	27	62	26	6	4	62	1.39
2950187--2950231	21	2.1	21	87	0	63	31	28	24	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2950813--2950847	18	1.9	18	88	11	54	54	5	17	22	1.64
2950904--2950947	22	2.0	22	86	4	63	45	0	22	31	1.53
2951723--2952026	149	2.0	149	99	0	599	27	17	20	34	1.95
2952005--2952049	23	2.0	23	86	0	63	20	24	28	26	1.99
2958779--2958804	6	4.3	6	100	0	52	50	50	0	0	1.00
2959194--2959233	7	5.7	7	100	0	80	25	15	15	45	1.84
2962269--2962349	26	3.2	25	67	22	69	34	16	7	41	1.76
2962283--2962363	25	3.2	24	68	22	67	33	14	8	43	1.76
2962259--2962400	51	2.8	51	89	1	203	35	13	7	43	1.71
2966470--2966550	26	3.2	25	66	22	60	33	16	8	41	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15