genome.fa.s7754.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007754.1 Hibiscus syriacus cultivar Beakdansim tig00110020_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3698414

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  8  of  15  ( 1710 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1863900--1863982	20	4.6	19	81	15	113	14	24	18	43	1.87
1864089--1864125	14	2.6	14	91	0	65	45	21	0	32	1.52
1864120--1864191	12	6.0	12	67	23	53	56	16	1	25	1.48
1864106--1864178	38	1.9	38	97	0	137	53	16	1	28	1.51
1865993--1866127	19	7.6	19	76	16	137	45	24	19	10	1.81
1866049--1866105	14	3.7	14	77	20	60	45	24	21	8	1.80
1866030--1866122	33	2.8	33	98	0	177	47	22	20	9	1.79
1865993--1866127	52	2.5	54	75	18	131	45	24	19	10	1.81
1866123--1866251	19	7.3	19	75	17	125	8	17	28	45	1.77
1866123--1866214	33	2.8	33	93	3	150	7	18	28	45	1.76
1866295--1866674	93	4.1	93	98	0	744	46	18	12	22	1.83
1866295--1866674	185	2.0	186	98	0	744	46	18	12	22	1.83
1868373--1868429	14	3.7	14	75	20	60	43	22	24	8	1.81
1868365--1868446	33	2.5	33	100	0	164	47	19	23	9	1.79
1868387--1868451	19	3.7	19	74	19	77	44	21	23	10	1.83
1868463--1868517	14	3.6	14	73	21	56	9	27	23	40	1.85
1868638--1868708	33	2.2	33	92	0	115	47	18	22	11	1.80
1868890--1868944	22	2.5	22	81	0	74	20	16	40	23	1.91
1869090--1869263	20	8.6	20	83	5	217	19	19	26	34	1.96
1869092--1869263	60	2.8	60	84	0	245	19	19	26	34	1.96
1869231--1869285	21	2.7	20	88	2	74	10	18	25	45	1.82
1869250--1869388	21	6.7	21	70	5	68	20	18	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1880612--1880739	60	2.1	60	83	8	154	44	0	14	39	1.51
1881402--1881476	36	2.1	36	85	5	98	46	1	2	49	1.24
1882154--1882384	20	11.5	20	80	3	187	36	22	19	20	1.95
1882214--1882384	40	4.3	40	87	1	218	37	21	19	21	1.95
1883205--1883315	19	5.9	20	75	17	96	45	18	24	12	1.84
1883203--1883315	38	3.1	39	72	17	114	45	17	24	12	1.83
1883342--1883392	20	2.5	20	90	0	75	11	11	21	54	1.68
1883939--1884063	40	3.1	40	89	3	189	19	18	24	38	1.93
1883936--1884063	20	6.3	20	77	8	134	18	18	24	38	1.93
1886610--1886700	21	4.4	21	83	9	116	18	17	27	36	1.94
1886609--1886700	41	2.2	41	92	0	148	18	17	27	36	1.93
1886609--1886722	41	2.8	41	86	5	124	19	17	27	35	1.94
1886709--1886761	20	2.7	20	91	5	81	13	18	24	43	1.86
1886769--1886826	19	2.9	20	79	7	64	20	17	18	43	1.89
1894804--1894850	23	2.0	23	100	0	94	8	40	29	21	1.83
1897040--1897075	5	7.2	5	87	0	54	75	0	5	19	1.00
1902499--1902544	24	1.9	24	86	0	65	21	10	8	58	1.58
1920712--1920740	6	5.0	6	95	4	51	34	31	17	17	1.93
1926467--1926507	15	2.6	16	88	3	57	43	4	0	51	1.23
1927883--1928037	60	2.6	59	81	7	170	44	5	16	34	1.69
1928026--1928070	20	2.2	20	84	7	56	44	6	11	37	1.66
1930217--1930246	15	2.0	15	100	0	60	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1931952--1932104	31	5.0	31	70	16	102	53	13	7	25	1.66
1931952--1932143	92	2.1	93	88	3	278	52	13	7	26	1.67
1935664--1935695	14	2.3	15	89	10	50	62	0	0	37	0.95
1938012--1938052	12	3.3	13	80	10	50	68	2	0	29	1.03
1941986--1942133	49	3.0	49	93	1	253	32	23	13	30	1.93
1946681--1946738	22	2.7	21	84	5	80	22	27	24	25	2.00
1947569--1947611	22	2.0	22	90	0	68	18	9	18	53	1.70
1947569--1947611	12	3.8	12	78	12	54	18	9	18	53	1.70
1952397--1952421	2	12.5	2	100	0	50	48	0	0	52	1.00
1957348--1957448	42	2.4	42	91	3	168	26	41	18	12	1.87
1958540--1958573	11	3.0	11	91	4	50	41	0	11	47	1.40
1959150--1960386	106	11.7	106	94	1	2067	23	18	24	33	1.97
1959150--1960386	210	5.9	212	94	1	2049	23	18	24	33	1.97
1964508--1964608	42	2.4	42	91	3	168	26	41	18	12	1.87
1965699--1965732	11	3.0	11	91	4	50	41	0	11	47	1.40
1972276--1972463	60	3.1	60	79	4	200	30	23	6	38	1.81
1972865--1972937	31	2.4	31	95	0	128	34	12	15	38	1.84
1974564--1974606	2	21.5	2	100	0	86	51	0	0	48	1.00
1985603--1985634	14	2.1	16	88	11	50	25	18	25	31	1.98
1986043--1986207	82	2.0	82	91	0	267	27	17	19	35	1.94
1986386--1986436	27	1.9	27	88	4	77	50	3	25	19	1.64
1986380--1986441	26	2.4	25	81	7	79	48	4	24	22	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1989115--1989188	38	2.0	38	86	2	105	43	6	4	45	1.49
1989730--1989761	2	16.0	2	100	0	64	0	0	50	50	1.00
1989593--1989929	168	2.0	168	100	0	674	30	8	24	36	1.85
1989898--1989963	2	33.0	2	100	0	132	0	0	50	50	1.00
1990097--1990133	2	18.5	2	100	0	74	0	0	51	48	1.00
1990264--1990306	2	21.5	2	100	0	86	0	0	51	48	1.00
1989921--1990437	168	3.0	174	95	4	967	20	9	27	42	1.82
1997355--1997500	60	2.4	59	78	5	150	36	17	4	41	1.71
1997659--1997805	61	2.4	61	77	1	161	44	5	20	29	1.74
2002815--2002864	24	2.1	24	88	0	73	46	10	16	28	1.78
2004143--2004255	58	1.9	59	96	1	210	18	27	15	38	1.90
2007881--2008006	60	2.1	60	85	2	164	30	6	15	46	1.71
2012190--2012227	19	2.0	19	94	0	67	34	26	5	34	1.79
2021375--2021683	41	7.6	41	77	8	258	20	21	23	35	1.96
2021400--2021472	20	3.6	20	75	3	83	10	21	27	39	1.87
2021379--2021484	20	5.2	21	68	7	67	17	19	26	35	1.95
2021440--2021634	61	3.2	60	83	7	198	18	22	23	35	1.95
2021542--2021661	20	5.9	20	78	6	134	15	23	23	38	1.92
2021346--2021614	142	1.9	142	86	3	380	19	22	23	34	1.96
2021960--2022120	41	4.0	41	84	7	204	37	24	21	16	1.94
2022047--2022182	62	2.2	62	100	0	272	33	26	21	18	1.96
2022024--2022223	103	1.9	103	90	4	323	36	25	20	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2022109--2022227	41	2.9	41	88	5	195	36	25	20	18	1.95
2022047--2022202	62	2.5	62	92	1	188	35	25	21	17	1.95
2024115--2024186	33	2.2	33	100	0	144	31	13	20	33	1.92
2026569--2026661	31	3.1	31	64	17	77	33	22	4	39	1.74
2026569--2026697	60	2.2	60	94	0	222	33	20	3	41	1.71
2028007--2028637	315	2.0	315	97	0	1201	40	15	10	32	1.82
2029488--2029559	31	2.4	31	90	2	110	37	2	9	50	1.50
2031037--2031133	51	1.9	51	82	0	122	20	32	25	20	1.97
2039069--2039108	6	7.2	6	91	2	50	0	17	52	30	1.45
2039286--2039342	29	2.0	29	96	0	105	24	14	17	43	1.86
2039557--2039673	32	3.7	32	77	0	108	29	14	13	42	1.84
2039969--2040093	32	3.9	32	78	0	106	42	16	12	28	1.84
2043495--2043544	26	1.9	26	95	0	91	4	28	0	68	1.08
2058903--2059271	20	18.5	20	85	4	458	34	26	18	20	1.96
2059945--2059991	24	2.0	24	87	8	69	25	14	21	38	1.92
2060166--2060190	12	2.1	12	100	0	50	72	0	28	0	0.86
2062494--2062800	19	17.4	19	79	16	358	47	18	20	14	1.83
2062522--2062800	52	5.2	53	90	5	358	47	17	20	14	1.83
2062561--2062800	71	3.4	71	83	11	355	47	17	20	15	1.83
2062494--2062832	142	2.4	137	89	6	497	46	18	20	14	1.83
2062829--2062930	19	5.6	19	85	12	151	14	23	17	44	1.86
2063036--2063072	14	2.6	14	91	0	65	45	21	0	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2063067--2063139	12	6.0	12	67	20	53	57	16	1	24	1.47
2063053--2063125	38	1.9	38	97	0	137	53	16	1	28	1.51
2064563--2064628	19	3.4	20	87	6	91	45	27	16	10	1.80
2064619--2064675	14	3.7	14	77	20	60	47	22	21	8	1.78
2064600--2064692	33	2.8	33	91	0	159	48	21	20	9	1.78
2064579--2064697	19	6.8	19	75	18	105	47	22	20	9	1.78
2064693--2064821	19	7.3	19	75	17	125	8	17	28	45	1.77
2064693--2064784	33	2.8	33	93	3	150	7	18	28	45	1.76
2064865--2065335	93	5.1	93	98	1	921	46	18	12	22	1.83
2067041--2067130	14	5.7	14	74	23	81	42	23	25	8	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15