Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007754.1 Hibiscus syriacus cultivar Beakdansim tig00110020_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3698414

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  15  of  15  ( 1710 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3575338--3575604
130
2.0
132
89
2
412
31
17
15
35
1.91
3583972--3584007
15
2.4
15
95
0
63
25
19
8
47
1.77
3587312--3587349
6
6.2
6
96
3
67
0
65
0
34
0.93
3594578--3594617
19
2.1
19
86
9
55
47
5
0
47
1.24
3604741--3604782
21
2.0
22
85
4
59
59
2
2
35
1.23
3605410--3605435
10
2.6
10
100
0
52
15
61
23
0
1.33
3606240--3606350
3
36.7
3
85
1
150
61
0
4
34
1.16
3606602--3607262
113
5.8
113
91
0
1047
28
19
13
37
1.90
3607876--3608056
83
2.2
82
91
1
290
34
22
13
29
1.92
3609179--3609257
17
4.5
18
77
16
69
3
16
0
79
0.87
3609179--3609259
30
2.8
28
78
16
92
3
16
0
80
0.85
3609183--3609257
27
2.9
26
84
7
82
4
16
0
80
0.87
3609179--3609257
5
15.6
5
73
21
67
3
16
0
79
0.87
3619878--3619919
18
2.4
17
84
11
50
69
4
0
26
1.08
3620621--3620662
21
2.0
22
85
4
59
59
2
2
35
1.23
3622114--3622262
3
49.7
3
84
0
199
61
0
4
34
1.17
3622104--3622260
27
5.9
27
95
1
264
61
0
4
34
1.16
3624246--3624445
32
6.2
32
82
4
233
44
6
14
35
1.70
3624238--3624424
96
1.9
96
85
2
259
44
6
14
34
1.71
3624935--3624965
16
1.9
16
93
0
53
45
0
0
54
0.99
3630790--3630867
25
3.1
25
100
0
156
35
11
12
39
1.80
3633514--3633554
16
2.6
16
88
0
55
36
19
17
26
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3666239--3666427
93
2.0
93
89
0
288
38
6
14
40
1.72
3666451--3666507
19
2.9
19
94
2
96
19
10
19
50
1.75
3666508--3666547
20
2.1
19
90
4
62
47
20
0
32
1.50
3668430--3668468
20
2.0
20
89
0
60
28
2
5
64
1.28
3677321--3677374
25
2.2
25
86
0
72
40
1
3
53
1.29
3684221--3684263
20
2.2
20
100
0
86
27
41
16
13
1.86
3695765--3695995
114
2.0
114
94
0
399
22
29
26
22
1.99
3698295--3698355
28
2.2
28
96
0
113
42
0
13
44
1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15

The End!