genome.fa.s7754.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007754.1 Hibiscus syriacus cultivar Beakdansim tig00110020_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3698414

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  2  of  15  ( 1710 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265705--265853	19	8.4	19	80	16	194	14	22	17	45	1.84
265686--265853	52	3.2	52	97	1	311	13	24	17	44	1.85
265686--265836	33	4.4	33	71	18	137	13	24	17	44	1.85
265959--265995	14	2.6	14	95	0	65	43	21	0	35	1.53
267465--267505	21	2.0	21	85	0	55	24	14	34	26	1.94
267967--268023	14	3.7	14	77	20	60	45	22	21	10	1.82
267948--268040	33	2.8	33	95	0	168	47	21	20	10	1.80
267911--268045	19	7.6	19	76	16	128	45	23	19	11	1.82
268041--268169	19	7.3	19	75	17	125	8	17	28	45	1.77
268041--268132	33	2.8	33	93	3	150	7	18	28	45	1.76
268217--268591	93	4.1	93	98	0	727	45	19	12	22	1.83
270289--270403	33	3.5	33	96	0	212	46	20	23	10	1.81
270315--270408	19	5.5	19	70	23	82	43	22	24	9	1.83
270297--270386	14	5.7	14	69	23	63	43	22	24	10	1.83
270404--270494	19	4.7	19	84	2	110	10	20	23	45	1.83
270589--270657	32	2.2	32	91	0	111	46	20	21	11	1.82
270608--270657	16	3.0	18	69	22	54	44	22	22	12	1.85
270834--270888	22	2.5	22	81	0	74	20	16	40	23	1.91
271035--271147	20	5.7	20	85	4	138	17	19	27	35	1.94
271134--271216	21	4.0	21	73	6	78	25	16	24	33	1.96
271114--271212	42	2.4	43	77	11	100	21	18	23	37	1.94
275069--275106	6	6.3	6	100	0	76	15	0	50	34	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
279747--279863	42	2.8	41	90	2	171	17	17	18	46	1.85
280054--280097	22	2.0	23	86	4	63	45	0	0	54	0.99
280065--280223	59	2.7	58	77	14	148	50	0	1	47	1.13
280217--280261	23	2.0	23	86	0	63	53	2	2	42	1.25
280561--280601	14	2.9	14	88	0	64	41	14	9	34	1.79
280603--280648	15	3.1	15	78	6	58	30	17	8	43	1.79
280627--280669	21	2.0	21	86	0	59	27	20	9	41	1.83
286453--286506	3	18.0	3	100	0	108	33	0	0	66	0.92
297215--297332	29	4.1	29	86	4	177	32	3	19	44	1.67
297216--297328	56	2.0	58	89	6	178	31	3	18	46	1.66
311512--311554	20	2.2	20	87	4	61	60	9	2	27	1.40
312250--312319	30	2.3	30	90	0	104	30	7	11	51	1.64
316684--316734	20	2.5	20	90	0	84	31	3	27	37	1.75
318286--318325	19	2.1	19	85	0	53	52	2	2	42	1.28
318972--319006	18	1.9	18	88	0	52	57	0	11	31	1.34
320226--320327	24	4.2	24	73	9	73	21	14	14	49	1.79
324593--324622	10	3.0	10	95	0	51	0	26	20	53	1.46
325215--325242	14	2.0	14	100	0	56	50	14	0	35	1.43
330146--330205	27	2.3	26	88	8	86	41	18	28	11	1.85
330154--330205	27	1.9	27	96	0	95	42	19	28	9	1.82
335196--335388	106	1.8	106	94	0	341	48	10	18	22	1.78
339681--339710	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339851--339877	2	13.5	2	100	0	54	48	0	0	51	1.00
340969--341492	262	2.0	262	99	0	1030	37	16	14	31	1.89
347026--347057	16	2.1	15	94	5	55	28	6	6	59	1.46
348804--348846	21	2.0	21	90	0	68	46	6	4	41	1.51
356377--356437	24	2.5	23	84	10	68	40	1	6	50	1.38
362046--362123	30	2.6	30	80	12	88	24	21	10	43	1.83
363220--363301	30	2.8	28	76	18	87	24	21	9	43	1.83
364406--364487	30	2.8	29	72	18	80	24	19	9	46	1.80
365588--365669	30	2.8	29	72	18	80	24	19	9	46	1.80
366772--366853	30	2.8	28	76	18	87	24	21	9	43	1.83
368571--368692	29	4.3	29	75	11	85	36	3	13	46	1.59
368609--368692	29	2.9	28	82	3	87	34	2	15	47	1.58
369610--369776	42	4.0	41	90	3	253	19	24	23	31	1.98
370479--370552	29	2.6	28	82	4	76	40	16	4	39	1.67
370530--370632	28	3.6	28	72	5	71	47	18	2	31	1.63
370502--370605	29	3.6	29	74	6	77	45	16	2	35	1.62
370584--370655	28	2.6	29	84	4	94	54	22	1	22	1.53
375536--375741	42	4.9	42	85	7	222	33	22	25	18	1.96
375575--375741	42	4.0	42	87	6	225	33	23	23	19	1.97
375575--375744	84	2.0	84	89	4	263	34	22	23	19	1.97
376658--376719	28	2.2	28	82	2	70	50	12	4	32	1.62
376658--376828	29	6.0	29	74	8	125	46	17	4	32	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376844--376885	13	3.5	13	75	18	54	16	21	45	16	1.86
378378--378780	203	2.0	203	87	6	586	39	11	15	34	1.82
381898--382005	20	5.3	20	83	6	128	30	26	18	24	1.98
382823--382876	24	2.2	24	86	0	72	24	16	18	40	1.90
383069--383101	14	2.5	13	86	13	50	48	24	21	6	1.72
383076--383102	14	1.9	14	100	0	54	44	29	18	7	1.77
385093--385127	18	1.9	18	94	0	61	54	25	2	17	1.57
385298--385517	20	11.6	20	77	11	214	34	21	18	25	1.96
385326--385503	34	4.9	34	75	16	115	35	22	18	23	1.96
385306--385517	54	3.8	53	79	10	228	33	22	18	24	1.97
385507--385570	20	3.2	20	90	0	101	12	17	23	46	1.81
385658--385811	70	2.3	65	82	12	188	52	16	2	28	1.57
387126--387227	21	4.9	21	75	11	102	24	20	34	20	1.97
387136--387195	20	2.9	20	76	18	61	21	16	40	21	1.92
387136--387227	41	2.2	41	82	5	114	25	17	38	19	1.93
387703--387746	20	2.2	20	95	0	79	50	22	13	13	1.77
387833--387871	19	2.0	20	85	5	53	15	15	17	51	1.77
387882--387924	20	2.2	20	91	0	68	20	18	25	34	1.96
387892--387935	20	2.2	20	83	0	52	13	18	25	43	1.86
389742--389808	20	3.4	20	81	2	82	50	23	13	11	1.75
390486--390522	19	1.9	19	88	0	56	24	16	27	32	1.96
391976--392006	10	3.1	10	100	0	62	19	32	19	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
392001--392043	18	2.4	18	80	0	50	20	41	20	16	1.90
392782--392986	43	4.7	42	80	7	198	18	19	22	39	1.93
392792--392954	85	1.9	86	89	3	258	19	17	24	38	1.93
392803--392986	43	4.3	42	81	9	203	19	20	22	37	1.94
393924--393973	20	2.4	21	80	3	66	36	0	16	48	1.46
394408--394445	2	19.0	2	100	0	76	50	0	0	50	1.00
396523--396547	13	1.9	13	100	0	50	56	0	0	44	0.99
399422--399484	20	3.1	20	73	10	65	41	4	1	52	1.32
399454--399523	24	2.9	24	72	10	70	41	4	2	51	1.36
400440--400470	2	16.0	2	93	6	55	51	0	0	48	1.00
410083--410167	41	2.1	41	97	0	161	36	25	9	28	1.87
411748--411781	3	11.7	3	87	6	52	38	0	0	61	0.96
413107--413139	15	2.2	16	89	10	52	27	0	3	69	1.03
414782--414830	14	3.4	14	82	2	53	38	0	12	48	1.41
415158--415343	78	2.4	78	89	1	275	36	10	17	35	1.84
416451--416580	36	3.6	35	81	2	134	21	1	52	24	1.56
416470--416573	24	4.3	24	71	4	66	22	0	51	25	1.54
416467--416616	72	2.1	72	94	0	264	20	1	52	26	1.54
416487--416610	24	5.2	24	72	5	108	18	1	53	26	1.54
416467--416592	36	3.5	36	81	0	153	20	0	53	25	1.51
416498--416617	36	3.3	36	79	0	150	17	1	53	27	1.53
416584--416640	30	1.9	30	82	7	71	14	5	54	26	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416560--416735	54	3.0	54	73	17	154	15	5	53	25	1.62
416599--416735	66	2.1	66	85	0	184	15	5	54	24	1.63
416701--416758	24	2.4	24	85	0	80	20	5	55	18	1.62
418800--418989	24	7.9	24	70	5	116	24	4	48	22	1.68
418924--418996	15	4.7	15	72	9	65	27	1	52	19	1.54
418924--418998	24	3.1	23	77	7	78	26	1	53	18	1.53
419949--420090	43	3.5	43	86	10	178	29	13	23	33	1.93
420135--420297	43	3.9	41	76	12	152	27	14	24	33	1.94
420110--420308	83	2.4	86	77	8	212	27	15	22	35	1.94
420261--420357	43	2.3	43	85	0	131	19	17	24	38	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15