genome.fa.s7772.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007772.1 Hibiscus syriacus cultivar Beakdansim tig00110053_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1636317

Tables:   1   2   3   4   5   6   7   8   9   

This is table  2  of  9  ( 1024 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199971--200017	8	6.5	8	75	22	50	42	2	6	48	1.40
199897--200042	73	2.0	73	85	4	195	45	4	7	42	1.53
199897--200042	38	4.0	37	78	8	147	45	4	7	42	1.53
201445--201799	195	1.8	194	90	3	579	31	29	6	32	1.83
210414--210452	15	2.7	15	88	4	53	41	0	10	48	1.37
211228--211276	21	2.3	21	85	3	71	53	16	0	30	1.43
211836--211924	28	3.1	29	93	4	153	17	35	26	19	1.94
212052--212119	29	2.3	29	87	0	91	7	32	33	26	1.84
212068--212139	29	2.5	29	100	0	144	8	27	37	26	1.85
212193--212373	80	2.3	81	97	1	339	18	37	23	20	1.95
212355--212422	29	2.4	29	85	2	84	8	29	33	27	1.87
212370--212448	29	2.8	29	94	1	133	8	25	36	29	1.86
219566--219615	2	25.5	2	91	4	84	46	2	0	52	1.12
220117--220154	20	1.9	20	88	0	58	47	2	5	44	1.39
222002--222068	18	3.6	18	74	18	64	32	20	14	31	1.93
222011--222051	21	2.0	21	85	9	57	34	21	12	31	1.91
222100--222143	20	2.2	20	83	0	52	34	18	13	34	1.90
229870--229909	19	2.1	19	85	4	53	27	15	30	27	1.96
229870--229926	20	2.9	20	81	5	62	29	12	28	29	1.93
235709--235767	21	2.8	20	87	10	75	18	32	18	30	1.95
242824--242873	12	4.2	12	92	0	82	42	0	0	58	0.98
242825--242884	3	19.7	3	80	10	68	38	0	1	60	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245314--245373	27	2.2	27	82	14	70	50	18	8	23	1.74
246465--246547	24	3.5	23	71	12	69	22	14	16	45	1.84
248623--249080	129	3.5	128	84	7	562	31	18	13	36	1.89
249125--249387	134	2.0	134	83	3	341	31	19	12	35	1.90
251208--251364	29	5.3	29	80	5	172	45	18	1	34	1.58
251208--251365	59	2.7	58	81	3	192	45	18	1	34	1.58
258544--258653	29	3.7	29	82	2	103	47	15	3	33	1.63
258544--258632	29	3.0	29	83	1	106	48	16	2	32	1.59
258559--258758	29	6.8	29	77	11	115	44	15	4	36	1.65
258693--258741	17	3.2	17	67	27	54	38	14	4	42	1.64
258664--258760	29	3.4	29	90	4	135	39	16	4	40	1.68
261674--261756	24	3.5	24	73	6	78	20	15	19	44	1.86
263395--263467	30	2.4	30	77	6	76	19	16	8	56	1.65
263643--263686	22	2.0	22	86	4	63	27	0	11	61	1.30
264557--264585	11	2.7	11	94	5	51	31	0	0	68	0.89
267286--267338	24	2.2	23	86	6	70	39	0	0	60	0.97
267314--267374	31	2.0	31	83	0	77	34	1	3	60	1.23
267328--267397	31	2.3	31	82	7	81	34	5	2	57	1.37
267381--267407	14	1.9	14	100	0	54	51	0	0	48	1.00
267401--267450	21	2.3	22	83	13	68	38	2	0	60	1.09
268717--268759	22	2.0	21	86	8	61	74	2	0	23	0.93
269365--269416	21	2.6	19	85	11	68	17	28	26	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273352--273383	2	16.0	2	100	0	64	50	0	0	50	1.00
283669--283699	2	15.5	2	100	0	62	48	0	0	51	1.00
297576--297680	2	53.0	2	92	1	176	47	0	0	51	1.07
301816--301852	13	2.7	14	91	4	58	37	2	0	59	1.12
310586--310640	23	2.5	22	77	13	60	58	5	0	36	1.21
310749--310797	2	24.5	2	100	0	98	51	0	0	48	1.00
315770--315806	2	19.0	2	94	5	67	48	0	0	51	1.00
320077--320102	12	2.2	12	100	0	52	50	15	34	0	1.45
320862--320903	14	3.0	14	79	6	50	28	4	0	66	1.12
321188--321227	2	20.0	2	100	0	80	50	0	0	50	1.00
327100--327180	21	3.8	21	77	7	74	14	23	35	25	1.93
333859--333911	21	2.6	21	88	8	74	20	11	7	60	1.55
334918--334954	19	2.0	18	89	5	56	45	0	21	32	1.52
337273--337417	42	3.5	40	72	12	114	35	17	20	26	1.94
339486--339580	28	3.4	28	98	0	181	32	18	7	41	1.79
339583--339718	45	3.0	45	95	2	236	22	24	22	30	1.99
339650--340021	76	4.9	76	94	2	606	25	19	21	33	1.97
339650--340021	153	2.5	153	92	2	608	25	19	21	33	1.97
339956--340058	45	2.3	45	83	3	127	33	19	15	32	1.93
340005--340210	76	2.7	76	90	1	306	30	18	16	33	1.94
339726--340218	274	1.8	271	90	1	806	27	19	19	33	1.96
339879--340134	121	2.1	121	88	1	379	30	19	17	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339802--340330	197	2.7	197	90	0	835	28	19	18	32	1.96
340081--340728	121	5.3	121	90	1	1010	29	20	18	32	1.96
340152--340255	45	2.3	45	86	0	136	32	21	16	29	1.95
340273--340375	44	2.3	45	89	3	154	30	21	16	32	1.95
340081--340732	243	2.7	242	90	2	1022	29	20	18	32	1.96
340400--340498	45	2.2	45	88	0	144	30	20	18	31	1.96
340521--340619	45	2.2	45	87	7	139	31	21	17	30	1.96
340639--340733	45	2.1	45	84	0	127	30	23	17	28	1.97
340916--340963	3	16.0	3	100	0	96	33	0	0	66	0.92
342102--342146	21	2.2	20	88	4	63	31	2	0	66	1.04
342120--342155	14	2.5	15	90	4	56	27	2	0	69	1.02
342106--342155	15	3.4	15	81	10	59	30	2	0	68	1.01
342401--342432	2	16.0	2	100	0	64	50	0	0	50	1.00
343973--344322	172	2.0	172	96	0	646	40	16	19	23	1.91
344848--344919	2	36.0	2	100	0	144	50	0	0	50	1.00
349625--349657	17	1.9	17	88	11	50	63	0	0	36	0.95
359525--359557	2	16.5	2	100	0	66	51	0	0	48	1.00
360613--360654	17	2.5	17	96	0	75	28	33	0	38	1.58
360918--361012	24	4.0	24	86	4	113	30	23	24	22	1.99
362228--362271	21	2.1	21	91	0	70	25	25	22	27	2.00
363989--364036	20	2.3	21	78	7	53	50	8	10	31	1.66
365145--365204	21	2.9	21	92	0	102	21	33	21	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365237--365293	21	2.7	21	100	0	114	21	28	21	29	1.98
366294--366507	38	5.6	38	81	3	189	39	15	14	30	1.87
366294--366509	76	2.8	75	84	1	252	39	15	14	31	1.87
370332--370506	20	8.6	20	81	6	129	34	26	19	19	1.96
370331--370506	61	2.9	61	84	1	246	35	26	19	19	1.95
370352--370504	41	3.8	41	85	3	211	33	25	19	20	1.96
370313--370485	81	2.1	81	82	4	206	36	25	18	19	1.94
370354--370502	81	1.8	81	89	2	237	33	25	19	21	1.97
370886--370956	33	2.2	33	89	0	106	14	22	15	47	1.81
371077--371131	14	3.6	14	73	21	56	41	23	25	9	1.83
371077--371147	33	2.2	33	94	0	124	43	25	22	8	1.81
371143--371273	19	7.7	19	70	23	103	9	24	22	43	1.83
371165--371287	14	7.7	14	72	24	93	8	25	22	43	1.82
371148--371295	33	4.5	33	96	0	278	9	24	20	45	1.81
372991--373463	93	5.1	93	98	1	898	22	12	18	46	1.83
373505--373632	19	7.3	19	74	18	116	45	28	17	8	1.78
373541--373632	33	2.8	32	90	6	141	45	28	18	7	1.76
373628--373762	19	7.6	19	73	16	110	10	18	25	45	1.81
373650--373706	14	3.7	14	72	20	51	8	19	26	45	1.79
373633--373725	33	2.8	33	88	0	150	9	19	23	47	1.79
375658--375693	14	2.6	14	95	0	63	33	0	22	44	1.53
375799--375875	14	4.6	17	70	25	58	42	19	24	12	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375799--375875	33	2.3	33	100	0	154	42	19	24	12	1.86
375882--376277	33	11.5	33	82	12	294	14	21	18	46	1.84
375904--376250	19	19.7	19	79	18	412	14	21	17	46	1.83
375882--376250	52	7.0	52	85	10	493	14	21	17	46	1.83
376204--376230	14	1.9	14	100	0	54	14	14	18	51	1.76
378557--378581	12	2.1	12	100	0	50	0	28	0	72	0.86
378756--378801	24	2.0	23	87	12	67	36	21	15	26	1.93
379477--379827	20	17.5	20	84	5	422	20	18	25	35	1.95
379477--379846	81	4.6	81	81	7	371	21	18	25	34	1.96
383146--383222	38	2.0	38	97	0	145	50	16	10	22	1.75

Tables:   1   2   3   4   5   6   7   8   9