genome.fa.s7772.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007772.1 Hibiscus syriacus cultivar Beakdansim tig00110053_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1636317

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1024 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1572921--1573131	81	2.6	80	78	10	214	29	27	19	23	1.98
1573923--1573969	24	2.0	24	95	0	85	27	21	17	34	1.95
1574171--1574207	14	2.6	14	91	4	56	51	21	21	5	1.68
1576243--1576277	18	1.9	18	94	0	61	54	25	2	17	1.57
1576455--1576709	20	13.7	20	73	16	190	34	21	20	22	1.96
1576452--1576709	34	6.9	40	78	12	223	34	21	20	23	1.96
1576568--1576753	73	2.5	73	86	3	239	37	21	18	22	1.95
1576859--1576909	25	2.0	25	96	0	93	52	15	1	29	1.54
1578302--1578408	21	5.1	21	73	4	81	25	18	35	20	1.95
1578292--1578408	42	2.8	42	78	2	119	24	17	36	21	1.94
1578886--1578929	20	2.2	20	95	0	79	52	20	11	15	1.74
1578936--1579016	33	2.4	33	85	2	108	39	20	20	18	1.93
1578956--1579029	33	2.2	33	80	0	85	43	22	18	14	1.87
1579000--1579036	19	1.9	19	94	0	65	51	29	13	5	1.63
1579045--1579181	34	3.9	34	71	11	121	19	20	22	37	1.95
1579041--1579189	74	2.0	74	93	0	253	20	20	21	38	1.94
1579038--1579182	20	7.8	20	65	17	71	21	20	22	36	1.95
1581199--1581254	20	2.8	20	91	0	85	50	21	14	14	1.78
1581202--1581268	20	3.3	20	87	0	80	43	22	14	19	1.87
1581649--1581725	22	3.6	21	86	11	111	18	15	44	22	1.87
1581890--1581975	20	4.2	20	81	8	111	24	20	26	27	1.99
1581922--1581996	21	3.6	21	77	10	91	20	22	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1581985--1582037	20	2.7	20	90	0	79	22	18	16	41	1.90
1581906--1581996	41	2.2	41	96	0	164	20	21	27	29	1.98
1582111--1582157	19	2.4	19	82	3	58	25	14	29	29	1.95
1582123--1582159	19	1.9	19	94	0	65	21	16	29	32	1.95
1592437--1592579	60	2.4	61	83	4	175	34	16	5	43	1.72
1593847--1593902	18	3.2	18	72	7	53	71	3	7	17	1.23
1593838--1593916	35	2.4	32	83	14	90	73	2	7	16	1.17
1593889--1593988	45	2.2	44	84	5	128	66	3	3	28	1.21
1593917--1593987	26	2.8	26	76	17	71	61	2	2	32	1.24
1593979--1594072	28	3.4	28	78	12	88	65	3	7	23	1.32
1594100--1594144	21	2.1	22	87	4	65	66	0	8	24	1.20
1594108--1594187	21	3.9	20	72	18	58	65	0	5	30	1.14
1594143--1594200	24	2.4	24	82	5	73	62	0	5	32	1.18
1594255--1594303	15	3.3	15	80	8	57	75	0	2	22	0.90
1594258--1594298	20	2.1	20	86	13	59	78	0	2	19	0.87
1595832--1596301	106	4.3	110	82	4	535	23	18	23	34	1.96
1597366--1597405	7	5.6	7	88	5	62	0	15	2	82	0.77
1597459--1597504	17	2.8	16	87	9	65	4	13	2	80	0.95
1597468--1597515	7	6.4	7	79	11	51	4	12	2	81	0.93
1598654--1598801	75	2.0	75	93	0	251	18	26	17	37	1.93
1603248--1604003	378	2.0	379	97	0	1433	26	16	24	32	1.96
1611353--1611395	20	2.1	21	87	8	63	18	13	0	67	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1611352--1611401	20	2.5	20	75	15	59	18	18	0	64	1.30
1615223--1615256	17	2.1	16	88	5	50	14	8	0	76	1.01
1620767--1620811	21	2.1	22	87	4	65	66	0	8	24	1.20
1620800--1620871	30	2.3	32	83	11	96	61	0	5	33	1.19
1620868--1620970	38	2.8	36	76	15	111	68	0	6	23	1.19
1620921--1620969	15	3.3	15	80	8	57	75	0	2	22	0.90
1620901--1620964	21	3.2	20	81	16	62	71	0	3	25	1.00
1621979--1622023	17	2.5	19	85	7	58	48	0	0	51	1.00
1624462--1624557	31	3.1	31	82	7	97	23	26	10	39	1.87
1624482--1624559	32	2.5	31	87	6	104	24	26	10	38	1.87
1627491--1627526	11	3.3	11	92	0	54	5	38	11	44	1.63
1627495--1627530	11	3.3	11	92	0	54	5	44	11	38	1.63
1628436--1628704	120	2.3	118	88	2	387	24	19	16	39	1.91
1628635--1629238	111	5.4	112	86	7	779	28	20	13	37	1.91
1628635--1629232	223	2.7	225	89	4	896	28	19	14	37	1.91
1629985--1630200	111	1.9	112	89	2	337	29	19	14	36	1.92
1630498--1630546	16	2.8	17	78	12	55	46	6	10	36	1.63
1630883--1630934	1	52.0	1	80	0	59	0	9	0	90	0.46
1630883--1630940	6	9.0	7	82	17	65	0	12	0	87	0.53
1630882--1630934	24	2.2	24	96	0	97	0	11	0	88	0.51

Tables:   1   2   3   4   5   6   7   8   9

The End!