genome.fa.s7772.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007772.1 Hibiscus syriacus cultivar Beakdansim tig00110053_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1636317

Tables:   1   2   3   4   5   6   7   8   9   

This is table  3  of  9  ( 1024 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389172--389312	29	4.8	29	83	8	162	53	1	9	35	1.42
389169--389312	59	2.4	60	83	8	188	54	1	9	35	1.41
393138--393181	21	2.2	21	84	8	56	52	4	2	40	1.34
393495--393535	16	2.5	17	81	14	50	39	0	2	58	1.11
393525--393588	33	2.0	32	90	9	103	45	0	1	53	1.10
393491--393599	31	3.7	31	77	16	83	45	0	1	52	1.11
393530--393599	31	2.2	33	82	12	85	47	0	1	51	1.09
393629--393673	23	2.0	23	90	0	72	44	0	2	53	1.13
393630--393680	23	2.2	23	85	0	66	47	0	1	50	1.12
395416--395628	51	4.2	51	85	2	302	45	15	15	24	1.84
408756--408793	18	2.1	18	95	0	67	18	21	44	15	1.86
408812--408940	67	1.9	67	85	0	177	24	27	31	17	1.97
409198--409240	20	2.2	20	86	0	59	34	20	13	30	1.92
411193--411401	103	2.0	103	92	0	346	22	15	15	45	1.84
411744--411800	2	29.0	2	96	3	107	50	0	0	49	1.00
413973--414020	23	2.1	23	100	0	96	37	18	8	35	1.81
424246--424283	20	1.9	20	88	0	58	52	10	10	26	1.68
424246--424289	20	2.2	20	83	0	52	52	9	13	25	1.70
426719--426758	17	2.4	17	91	0	62	20	35	17	27	1.95
431067--431143	24	3.6	22	75	20	67	29	19	25	24	1.98
432226--432263	2	19.0	2	100	0	76	50	0	0	50	1.00
432325--432355	2	15.5	2	100	0	62	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432746--432813	23	3.0	23	86	0	100	17	26	26	29	1.98
437317--437379	2	31.5	2	100	0	126	50	0	0	49	1.00
437770--437837	23	3.0	23	82	0	91	19	26	25	29	1.98
444499--444551	27	2.0	27	84	0	70	43	3	5	47	1.45
445615--445730	35	3.4	34	71	16	105	44	2	5	47	1.39
445728--445846	35	3.4	35	74	15	118	46	5	5	42	1.50
447212--447236	2	12.5	2	100	0	50	52	0	0	48	1.00
449269--449331	2	31.5	2	100	0	126	50	0	0	49	1.00
449875--450204	37	9.2	34	72	18	185	46	4	6	43	1.48
450008--450244	74	3.2	73	71	15	204	48	3	5	42	1.43
450046--450135	39	2.2	40	88	5	128	52	3	4	40	1.38
449965--450210	35	6.9	38	74	18	153	48	4	5	41	1.47
452272--452899	311	2.0	311	100	0	1256	33	14	14	37	1.86
457724--457749	2	13.0	2	100	0	52	50	0	0	50	1.00
458296--458367	2	36.0	2	100	0	144	50	0	0	50	1.00
459269--459293	2	12.5	2	100	0	50	48	0	0	52	1.00
461022--461087	30	2.2	31	78	13	75	62	10	0	27	1.28
468551--468624	20	3.6	21	85	5	98	39	18	21	20	1.93
468551--468642	41	2.3	40	83	5	105	38	19	20	21	1.94
469154--469220	19	3.5	19	85	2	89	47	25	16	10	1.78
469238--469326	14	5.6	14	71	23	70	10	24	23	41	1.85
469230--469350	33	3.6	33	96	1	215	10	25	22	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
469216--469375	19	9.1	19	68	21	107	12	24	20	43	1.86
471468--471556	42	2.1	42	80	0	106	21	38	16	23	1.93
472924--472959	14	2.6	14	95	0	63	30	0	25	44	1.54
473084--473140	14	3.7	14	75	20	60	43	22	24	8	1.81
473066--473155	33	2.7	33	94	0	153	43	21	22	13	1.87
473066--473126	19	3.5	19	74	21	69	44	21	22	11	1.84
473151--473301	19	8.7	19	63	21	62	15	21	19	43	1.87
473155--473281	33	3.9	32	85	8	184	14	22	18	44	1.86
473148--473280	66	2.0	66	94	0	230	16	22	18	42	1.88
475573--475597	12	2.1	12	100	0	50	0	28	0	72	0.86
475772--475825	24	2.2	24	90	0	81	40	20	16	22	1.91
476688--476737	20	2.5	19	78	9	64	40	22	16	22	1.91
476951--477038	20	4.4	20	78	5	106	39	23	20	15	1.91
477065--477151	19	4.8	19	90	9	139	13	21	17	47	1.82
477065--477161	38	2.8	33	85	14	149	13	21	18	46	1.83
477288--477325	13	2.8	13	92	4	58	50	18	0	31	1.47
477281--477335	13	4.2	13	78	15	51	54	18	0	27	1.44
478735--478821	40	2.1	42	82	4	115	24	14	37	22	1.92
479164--479201	20	1.9	20	94	0	67	34	31	13	21	1.91
479189--479261	20	3.7	20	92	0	110	35	24	24	15	1.94
479192--479275	40	2.1	40	84	2	107	39	23	22	14	1.91
479264--479322	14	3.9	14	74	20	55	50	23	15	10	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
479248--479339	33	2.8	33	96	0	166	48	21	17	11	1.79
479351--479414	14	4.3	14	76	19	67	9	15	23	51	1.72
479372--479430	19	3.4	19	73	22	74	13	18	20	47	1.82
479358--479430	33	2.2	33	100	0	146	12	17	21	47	1.80
479415--479469	20	2.8	19	83	8	65	16	23	23	36	1.94
480010--480057	18	2.7	18	93	0	87	14	12	45	27	1.81
481377--481435	20	3.0	20	87	0	73	44	22	18	15	1.87
481684--481727	22	2.0	22	90	0	70	20	15	43	20	1.88
481894--482072	41	4.4	41	77	2	155	24	16	23	35	1.95
481914--482024	20	5.5	20	77	6	98	23	16	27	33	1.95
481961--482086	41	3.1	41	83	2	146	22	19	22	36	1.95
482102--482151	21	2.4	22	76	6	59	38	18	24	20	1.93
495779--495820	7	6.0	7	81	8	50	14	16	14	54	1.71
495779--495820	15	3.0	14	83	10	50	14	16	14	54	1.71
495880--495937	26	2.3	25	84	3	80	22	12	8	56	1.62
497907--497982	9	8.7	9	73	20	54	81	1	15	1	0.82
497902--497972	17	4.0	17	82	10	88	80	1	16	1	0.86
497907--497981	17	4.2	17	72	17	64	82	1	14	1	0.80
503003--503055	22	2.4	22	83	0	70	32	15	15	37	1.88
503457--504003	112	4.9	113	86	2	676	38	14	18	28	1.90
503956--504019	19	3.3	19	65	26	53	46	7	26	18	1.76
503955--504022	22	3.3	22	66	26	67	48	7	26	17	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503943--504042	39	2.6	39	100	0	200	46	8	24	22	1.78
503832--504151	151	2.1	151	92	1	534	40	11	20	27	1.87
503720--504263	263	2.1	264	90	1	840	39	12	20	28	1.88
503982--504270	112	2.6	112	92	1	481	39	11	20	29	1.87
505691--505751	30	2.0	30	84	6	79	29	1	4	63	1.24
512550--512581	16	2.0	16	100	0	64	62	0	12	25	1.30
512566--513183	182	3.4	181	87	2	796	43	12	16	27	1.84
515039--515094	24	2.5	22	77	13	60	39	0	8	51	1.33
515374--515403	15	2.0	15	93	0	51	20	13	50	16	1.78
515759--515797	18	2.2	18	95	0	69	58	0	35	5	1.20
517267--517316	19	2.6	19	87	6	66	28	4	10	58	1.49
517458--518393	198	4.7	197	91	2	1500	36	17	15	30	1.91
518757--518794	15	2.5	15	91	0	67	15	44	5	34	1.69
519918--519955	12	3.2	12	92	0	58	39	2	31	26	1.70
521771--522804	198	5.2	198	89	3	1324	38	16	13	31	1.87
525953--526470	198	2.6	196	81	5	558	38	14	15	31	1.88
526954--526997	20	2.3	19	81	11	54	47	6	22	22	1.75
527135--527212	38	2.1	39	85	7	108	46	2	1	50	1.23
530984--531026	19	2.1	21	84	16	56	20	13	20	44	1.86
533895--534286	38	10.7	37	81	10	377	44	3	7	44	1.49
535133--535166	14	2.4	14	100	0	68	17	0	58	23	1.38
535514--535637	5	24.0	5	68	21	51	20	4	0	73	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
535502--535594	17	5.1	18	74	17	66	21	4	1	73	1.07
535495--535598	12	9.0	12	75	16	62	22	3	0	73	1.06
537677--537717	20	2.0	20	95	0	73	24	26	24	24	2.00
545003--545053	22	2.3	22	79	3	57	33	19	21	25	1.97
556888--556946	27	2.2	27	81	6	66	25	11	16	45	1.82
559028--559056	15	2.0	15	93	6	51	34	13	0	51	1.42
566310--566363	20	2.7	20	97	0	99	31	18	29	20	1.96
573443--573493	13	3.6	14	82	17	61	70	0	19	9	1.14
575361--575392	14	2.3	14	94	0	55	15	0	0	84	0.63
578730--578820	2	46.5	2	95	4	168	49	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9