genome.fa.s7772.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007772.1 Hibiscus syriacus cultivar Beakdansim tig00110053_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1636317

Tables:   1   2   3   4   5   6   7   8   9   

This is table  4  of  9  ( 1024 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
578825--578861	14	2.6	15	79	12	51	54	0	2	43	1.14
578989--579620	75	8.5	76	93	4	1090	35	22	20	22	1.96
589145--589203	30	1.9	32	82	6	77	61	1	6	30	1.32
589711--590008	148	2.0	146	87	3	429	45	6	10	37	1.64
590985--591013	13	2.2	13	100	0	58	0	31	24	44	1.54
591535--591598	3	21.0	3	82	9	76	60	0	1	37	1.06
604045--604091	22	2.1	22	84	7	60	38	2	19	40	1.63
608083--608116	16	2.1	16	89	10	52	32	5	23	38	1.79
608231--608269	14	2.7	15	88	8	62	23	35	5	35	1.77
610264--610311	22	2.1	23	92	7	80	29	14	12	43	1.82
610999--611061	29	2.2	29	100	0	126	41	6	14	38	1.71
611001--611049	15	3.3	15	72	16	57	42	4	12	40	1.61
623445--623486	22	1.9	22	95	0	75	26	23	21	28	1.99
631956--632009	3	19.0	3	77	11	60	66	1	3	27	1.19
631961--632015	26	2.2	25	93	3	92	65	3	5	25	1.31
632161--632545	46	9.0	44	72	13	209	26	19	30	23	1.98
632248--632407	82	1.9	82	83	7	203	26	19	30	23	1.98
632193--632548	128	2.8	129	86	3	511	25	19	31	23	1.98
632626--632743	63	1.9	62	87	8	177	41	11	18	28	1.85
632930--632997	28	2.4	28	90	4	102	44	17	7	30	1.76
632984--633090	55	2.0	55	86	1	153	39	14	14	30	1.87
633086--633207	28	4.5	25	81	9	100	48	13	9	27	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
633101--633200	28	3.7	27	84	7	123	47	15	9	29	1.75
633448--633565	35	3.4	36	78	3	116	36	13	19	30	1.90
633448--633577	36	3.7	36	79	9	126	34	13	18	33	1.90
633518--633737	105	2.1	105	82	8	265	39	13	18	29	1.88
634203--634248	4	11.2	4	82	13	58	23	2	21	52	1.58
637826--637879	27	2.0	28	96	3	101	62	3	16	16	1.46
641186--641246	3	21.0	3	77	12	65	67	1	3	27	1.16
664788--664812	2	12.5	2	100	0	50	48	0	0	52	1.00
664869--664907	19	2.1	19	100	0	78	25	15	5	53	1.62
665043--665079	15	2.2	18	86	13	53	35	0	2	62	1.10
665034--665087	20	3.0	18	76	20	51	33	0	3	62	1.12
668194--668291	29	3.4	28	67	22	67	46	6	6	40	1.53
668170--668317	58	2.6	56	78	12	165	45	6	6	41	1.53
669239--669288	20	2.7	18	77	19	57	58	6	2	34	1.34
671645--671783	55	2.5	55	79	0	134	45	8	26	19	1.79
680491--680530	21	1.9	21	89	0	62	10	25	40	25	1.86
680512--680574	21	2.9	21	80	4	72	19	25	34	20	1.96
684380--684419	21	1.9	21	85	10	55	35	10	2	52	1.48
687208--687634	2	215.5	2	66	19	166	45	4	4	44	1.45
687286--687348	33	2.0	32	84	6	83	44	4	7	42	1.54
687438--687476	11	3.5	11	83	13	53	53	2	0	43	1.14
687736--687769	16	2.1	16	94	0	59	29	2	0	67	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
691798--691884	2	43.5	2	100	0	174	50	0	0	49	1.00
697708--697775	31	2.2	31	94	0	118	20	26	14	38	1.91
700061--700104	22	2.2	20	84	15	56	27	29	11	31	1.91
702192--702251	23	2.6	23	75	0	75	21	26	23	28	1.99
706053--706086	16	2.1	16	88	0	50	64	2	20	11	1.39
709046--709105	23	2.6	22	87	10	84	18	25	28	28	1.98
710288--710318	3	10.3	3	92	0	53	3	35	0	61	1.12
713411--713532	59	2.1	59	84	0	154	28	16	24	30	1.96
713597--713638	20	2.1	20	90	0	66	16	9	26	47	1.77
713639--713877	44	5.4	44	93	2	399	39	6	22	32	1.79
713665--713737	25	3.2	25	60	28	61	41	8	20	30	1.81
713667--713738	24	3.2	24	62	34	59	40	8	20	30	1.82
713793--713866	24	3.2	24	62	27	61	37	8	22	31	1.84
716701--716801	40	2.7	36	89	7	139	46	3	5	43	1.46
716761--716961	25	8.0	27	77	17	186	48	4	6	40	1.50
716910--716961	28	1.9	26	88	7	77	48	3	5	42	1.45
716955--716984	2	15.5	2	93	6	53	53	0	0	46	1.00
716920--717023	49	2.1	47	86	10	138	47	1	2	48	1.28
718183--718234	9	5.7	9	82	11	61	19	5	0	75	1.01
718183--718233	18	2.7	19	78	9	68	17	5	0	76	0.98
718255--718306	23	2.4	21	93	6	86	13	11	3	71	1.28
719757--719805	23	2.2	22	82	10	55	44	4	0	51	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
719789--719845	15	3.7	15	78	17	64	64	0	0	35	0.93
719763--719809	23	2.0	24	87	4	69	51	2	0	46	1.13
719789--719863	16	5.0	14	77	21	64	64	1	0	34	1.02
719789--719861	31	2.4	31	86	11	98	64	1	0	34	1.02
720245--720305	25	2.5	25	78	2	70	37	11	4	45	1.62
720681--720746	25	2.6	25	85	0	87	40	12	6	40	1.67
722156--722191	12	3.0	12	100	0	72	41	0	8	50	1.33
726400--726441	20	2.0	20	90	4	66	52	0	2	45	1.13
726417--726447	15	2.1	15	93	0	53	41	0	3	54	1.16
733855--734036	75	2.4	75	81	3	188	27	7	14	50	1.69
734308--734397	19	4.4	19	74	16	81	36	4	27	31	1.77
734810--734881	21	3.6	20	70	10	67	34	26	18	20	1.95
734802--734887	40	2.2	40	95	0	154	33	22	19	24	1.97
734827--734890	19	3.3	19	70	8	65	34	23	18	23	1.96
735361--735428	33	2.1	33	100	0	136	30	11	16	41	1.84
746547--746628	2	41.0	2	100	0	164	50	0	0	50	1.00
749391--749423	16	2.1	16	100	0	66	30	9	6	54	1.56
749695--749800	29	3.6	29	71	11	74	43	2	0	52	1.22
749865--749906	15	2.8	15	79	10	50	57	0	4	38	1.20
749898--749943	17	2.6	18	80	10	51	54	2	2	41	1.25
749894--749958	20	3.2	20	79	14	62	58	1	1	38	1.17
749919--749958	20	1.9	22	90	10	66	57	0	2	40	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
749891--749959	21	3.4	21	80	11	65	55	1	1	42	1.18
751443--751560	57	2.1	55	80	13	134	32	22	17	27	1.97
752359--752394	14	2.6	14	86	0	54	30	13	22	33	1.93
753853--753881	13	2.2	13	100	0	58	93	0	6	0	0.36
753848--753877	15	2.0	15	93	0	51	90	3	6	0	0.56
754692--754720	14	2.1	14	100	0	58	41	13	6	37	1.72
759385--759438	2	27.0	2	96	0	99	48	0	0	51	1.00
760117--760145	15	1.9	15	100	0	58	48	10	6	34	1.64
761688--761750	13	4.5	13	74	18	63	17	44	20	17	1.87
761684--761750	31	2.2	31	88	0	98	17	46	19	16	1.85
761740--761773	15	2.1	17	89	10	54	14	35	23	26	1.94
763062--763096	18	1.9	18	88	0	52	54	0	17	28	1.43
764084--764152	12	5.8	12	78	10	61	17	14	18	49	1.80
764085--764156	24	3.0	23	86	6	99	19	12	18	50	1.78
768126--768186	27	2.3	27	97	0	113	40	32	6	19	1.77
771829--771914	2	42.5	2	78	11	77	48	5	2	43	1.39
773822--773861	20	2.0	19	85	9	53	42	2	0	55	1.13
774394--774440	19	2.6	18	83	12	53	44	27	10	17	1.81
776002--776046	17	2.6	18	82	13	58	62	0	0	37	0.96
776002--776047	18	2.6	17	83	13	58	60	0	0	39	0.97
776882--776932	25	2.0	26	88	3	77	31	19	7	41	1.80
780673--780827	29	5.4	28	75	2	121	19	22	18	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
780674--780828	58	2.7	57	78	3	159	20	22	17	40	1.92
784047--784115	22	3.1	22	76	17	63	71	0	2	26	1.00
784062--784115	12	4.5	12	80	13	58	70	0	1	27	0.98
784063--784115	25	2.3	23	83	9	63	69	0	1	28	0.99
784047--784136	44	2.0	44	81	8	103	66	0	4	28	1.11
784050--784179	23	5.4	23	68	25	74	64	1	3	30	1.20
784230--784290	2	30.5	2	100	0	122	50	0	0	49	1.00
784323--784387	23	3.0	21	77	6	58	63	1	6	29	1.28
784397--784444	23	2.0	24	84	11	64	70	2	2	25	1.09
784869--784953	37	2.3	37	87	0	116	30	11	15	42	1.83

Tables:   1   2   3   4   5   6   7   8   9