genome.fa.s7772.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007772.1 Hibiscus syriacus cultivar Beakdansim tig00110053_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1636317

Tables:   1   2   3   4   5   6   7   8   9   

This is table  6  of  9  ( 1024 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
980498--980537	17	2.3	17	86	4	53	27	2	0	70	1.01
980516--980554	15	2.5	15	87	4	51	28	0	2	69	1.02
982485--982556	30	2.4	30	76	2	72	47	2	15	34	1.60
985249--985318	36	1.9	36	82	5	88	48	5	14	31	1.67
985374--985407	16	2.1	16	100	0	68	26	5	5	61	1.42
986520--986564	2	22.5	2	100	0	90	48	0	0	51	1.00
986884--986937	24	2.2	24	77	6	56	22	14	20	42	1.88
992745--992796	18	2.9	19	86	11	74	80	0	19	0	0.71
992745--992807	18	3.0	22	72	25	57	77	1	20	0	0.85
993993--994131	36	3.7	37	76	7	129	34	17	10	37	1.84
994167--994365	66	3.0	65	85	1	256	24	21	13	41	1.88
994180--994361	36	5.4	34	64	21	80	24	20	13	41	1.88
994360--994721	131	2.8	130	82	5	381	26	31	16	24	1.97
998008--998208	40	5.0	40	93	0	339	28	9	28	32	1.88
1001493--1001600	20	5.3	19	81	8	72	30	20	20	28	1.97
1001553--1001600	20	2.4	20	100	0	96	41	16	18	22	1.90
1001618--1001741	20	6.2	20	85	5	178	28	28	21	21	1.99
1001594--1001728	61	2.2	61	93	0	225	28	26	22	22	1.99
1001630--1001741	41	2.8	40	85	8	154	28	27	21	22	1.99
1002561--1002607	24	2.0	24	95	0	85	21	21	21	36	1.96
1004860--1004890	12	2.6	12	94	0	53	48	29	6	16	1.70
1005068--1005328	20	13.7	20	77	10	224	34	21	20	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1005073--1005213	54	2.6	54	94	0	237	36	21	21	19	1.95
1005073--1005288	54	3.9	54	85	4	227	36	21	20	22	1.96
1005065--1005333	54	4.7	58	82	5	225	35	20	20	23	1.96
1005478--1005543	30	2.2	30	94	0	114	54	12	3	30	1.52
1006926--1007026	21	4.8	21	70	4	78	23	17	35	22	1.95
1006934--1007026	42	2.2	42	82	3	116	23	16	38	21	1.92
1007502--1007541	20	2.0	20	95	0	71	50	22	10	17	1.76
1007593--1007696	20	5.5	20	72	17	87	17	22	25	35	1.95
1008064--1008111	21	2.3	22	78	10	55	27	39	16	16	1.90
1009697--1009752	20	2.8	20	91	0	85	50	21	16	12	1.78
1009700--1009792	20	4.7	20	83	2	80	40	23	17	18	1.90
1010137--1010201	22	3.0	22	88	0	103	20	15	43	21	1.88
1010378--1010480	20	5.1	20	82	6	127	25	21	25	28	1.99
1010378--1010501	61	2.0	61	92	0	203	23	21	25	29	1.99
1010495--1010542	20	2.4	20	92	0	78	25	16	14	43	1.86
1010616--1010662	19	2.4	19	82	3	58	25	14	29	29	1.95
1010628--1010664	19	1.9	19	94	0	65	21	16	29	32	1.95
1013026--1013052	13	2.1	13	100	0	54	44	7	22	25	1.79
1013914--1013945	15	2.1	15	94	0	55	56	0	37	6	1.25
1017094--1017122	12	2.4	12	100	0	58	31	0	17	51	1.45
1017134--1017315	99	1.8	99	87	0	274	32	18	17	31	1.94
1020060--1020106	20	2.3	21	81	3	60	65	2	4	27	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1020086--1020123	16	2.4	16	82	4	51	63	0	5	31	1.17
1020806--1020906	36	2.8	37	86	6	134	30	15	14	38	1.88
1021368--1021934	218	2.7	208	81	7	610	21	20	25	32	1.97
1021375--1021937	109	5.3	109	81	7	516	21	19	25	33	1.97
1022587--1023062	36	13.9	36	65	18	185	36	13	20	29	1.90
1022654--1023044	102	3.9	102	94	1	662	37	12	20	29	1.89
1024555--1024619	20	3.1	21	78	10	62	1	15	6	76	1.05
1024576--1024628	23	2.4	22	84	6	72	0	15	5	79	0.91
1027953--1027990	16	2.4	16	82	4	51	63	0	5	31	1.17
1028241--1028269	2	14.5	2	100	0	58	51	0	0	48	1.00
1028686--1028779	36	2.6	37	80	8	104	34	12	13	39	1.83
1031797--1031902	31	3.6	30	76	9	83	36	8	12	42	1.73
1031998--1032042	21	2.0	23	87	8	67	44	11	6	37	1.66
1040640--1040865	83	2.7	83	83	1	274	30	17	19	32	1.95
1040990--1041101	43	2.7	41	84	6	143	35	17	19	26	1.94
1042608--1042684	22	3.5	22	100	0	154	16	20	12	49	1.79
1044615--1044847	43	5.4	43	79	4	238	30	21	18	30	1.96
1044618--1044906	43	6.7	43	77	6	226	29	22	17	30	1.97
1045168--1045455	60	4.8	60	82	1	308	36	2	36	25	1.68
1045172--1045458	120	2.4	120	81	3	362	35	2	36	25	1.68
1053332--1053368	17	2.1	18	85	14	51	54	0	0	45	1.00
1053379--1053443	11	6.0	11	70	22	57	66	3	3	27	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1054328--1054364	11	3.4	11	88	0	56	0	24	8	67	1.17
1054783--1054825	19	2.3	18	92	4	68	65	0	2	32	1.06
1054990--1055419	74	5.8	73	92	1	682	33	20	18	28	1.96
1056090--1056167	22	3.6	21	91	5	120	38	14	12	34	1.84
1060892--1060929	19	2.1	19	85	5	51	2	21	0	76	0.91
1066234--1066301	27	2.5	26	81	11	84	67	1	1	29	1.08
1067192--1067229	18	2.1	18	85	9	51	52	2	0	44	1.14
1067240--1067331	16	5.4	16	73	20	53	64	4	3	28	1.28
1067247--1067291	24	1.9	23	81	4	54	62	6	2	28	1.33
1067240--1067300	19	3.5	17	77	20	63	65	4	1	27	1.22
1068664--1068742	3	26.0	3	87	2	113	65	0	1	32	1.00
1070180--1070290	32	3.5	32	81	0	123	20	19	11	47	1.80
1071095--1071171	30	2.6	30	95	0	136	16	16	35	31	1.92
1071179--1071256	13	5.9	13	72	22	56	20	43	21	14	1.87
1071192--1071267	18	3.9	18	74	15	71	19	44	21	14	1.86
1071204--1071257	23	2.3	23	83	0	72	22	44	20	12	1.85
1074176--1074299	63	2.0	63	82	6	153	17	26	29	26	1.98
1075432--1075527	43	2.2	43	79	3	104	42	4	3	50	1.37
1077748--1077801	26	2.1	26	100	0	108	22	27	3	46	1.69
1083027--1083252	113	2.0	113	98	0	434	27	24	17	30	1.97
1085125--1085172	19	2.9	15	77	22	51	68	2	8	20	1.26
1091614--1091721	32	3.4	31	84	5	108	17	22	30	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1091650--1091748	32	3.1	31	79	5	90	20	24	25	30	1.99
1098862--1098895	2	17.0	2	100	0	68	50	0	0	50	1.00
1099501--1099677	87	2.0	87	97	0	336	26	16	32	24	1.96
1104022--1104103	37	2.2	37	84	2	101	30	9	23	36	1.87
1105232--1105292	30	2.1	27	82	8	68	45	1	3	49	1.28
1107922--1108578	182	3.6	182	88	2	944	43	13	15	27	1.84
1107922--1108578	365	1.8	364	88	3	1007	43	13	15	27	1.84
1109642--1109698	23	2.4	23	76	2	69	38	15	8	36	1.79
1109735--1109779	23	2.0	23	90	0	72	37	17	8	35	1.81
1109651--1109812	87	1.9	87	92	0	270	33	13	11	41	1.80
1121879--1121920	3	13.7	3	85	5	57	64	2	0	33	1.07
1131831--1131870	14	3.1	13	82	10	55	60	0	0	40	0.97
1133314--1133363	3	16.7	3	91	0	82	62	0	2	36	1.07
1133682--1134573	113	7.9	112	96	0	1534	30	19	12	37	1.89
1135371--1135552	83	2.2	83	95	0	337	35	22	13	29	1.92
1136687--1136722	9	3.9	9	89	7	54	0	13	0	86	0.58
1136687--1136719	10	3.3	10	91	8	50	0	12	0	87	0.53
1151858--1151902	21	2.1	21	87	0	63	31	28	24	15	1.96
1152716--1152840	31	4.0	31	93	2	198	20	19	22	37	1.94
1156260--1156394	70	1.9	70	93	0	234	34	11	17	36	1.86
1169610--1169659	20	2.5	20	87	6	66	34	32	12	22	1.90
1173038--1173087	20	2.5	19	81	9	55	26	14	2	58	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1183175--1183219	15	2.9	16	78	21	51	26	8	28	35	1.87
1183348--1183456	24	4.6	24	80	6	100	22	22	24	29	1.99
1183351--1183414	23	2.7	24	80	7	69	21	23	26	28	1.99
1183327--1183427	47	2.1	47	80	7	107	21	24	22	30	1.99
1193901--1193944	20	2.2	20	88	8	63	81	9	9	0	0.87
1193902--1193944	19	2.2	19	87	4	59	81	9	9	0	0.88
1197094--1197125	13	2.5	13	100	0	64	18	9	31	40	1.83
1200534--1200596	23	2.7	23	80	2	72	33	22	20	23	1.97
1200621--1200669	21	2.3	21	96	0	89	34	28	0	36	1.58
1204538--1204604	15	4.4	15	71	3	62	29	2	25	41	1.70

Tables:   1   2   3   4   5   6   7   8   9