genome.fa.s7772.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007772.1 Hibiscus syriacus cultivar Beakdansim tig00110053_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1636317

Tables:   1   2   3   4   5   6   7   8   9   

This is table  7  of  9  ( 1024 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1204710--1204810	47	2.1	47	83	7	125	23	25	19	30	1.98
1204722--1204795	23	3.2	24	72	12	73	25	24	20	29	1.99
1204777--1204834	24	2.5	24	85	2	91	22	22	22	32	1.98
1205513--1205537	13	1.9	13	100	0	50	40	12	24	24	1.88
1206863--1206937	36	2.1	36	85	9	100	48	1	4	46	1.29
1207078--1207120	20	2.3	18	80	11	50	20	25	9	44	1.81
1207264--1207351	38	2.3	38	80	5	99	43	6	0	50	1.29
1207369--1207463	31	2.9	31	70	9	73	31	9	1	57	1.37
1207450--1207518	31	2.2	30	84	5	84	44	7	1	46	1.40
1207629--1207746	31	4.0	31	73	17	115	51	0	6	41	1.28
1207736--1207782	18	2.6	18	86	3	58	38	0	12	48	1.41
1215045--1215258	58	3.7	57	75	8	155	42	9	8	38	1.69
1215808--1216490	157	4.4	158	84	6	776	49	5	16	28	1.67
1215808--1216479	309	2.2	308	84	6	853	49	5	16	28	1.67
1216773--1216904	20	6.6	20	90	1	194	31	29	19	18	1.96
1216751--1216904	40	3.8	40	87	4	195	31	29	19	19	1.96
1216751--1216905	60	2.6	60	84	6	197	32	29	19	19	1.96
1217284--1217354	33	2.2	33	94	0	124	11	23	16	47	1.79
1217434--1217506	21	3.5	21	78	9	87	46	17	20	15	1.84
1217494--1217550	14	3.7	14	75	20	60	43	22	24	8	1.81
1217487--1217566	33	2.4	33	95	0	142	47	22	21	8	1.78
1217434--1217536	19	5.4	20	71	18	69	45	19	21	13	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1217592--1217656	21	3.1	21	80	4	87	12	26	13	47	1.78
1217591--1217654	20	3.2	20	80	4	83	14	25	14	46	1.81
1219354--1219665	93	3.4	93	99	0	615	21	13	18	45	1.84
1219779--1219886	33	3.3	33	92	0	171	47	25	18	8	1.77
1219828--1219886	19	3.4	19	77	22	83	47	30	15	6	1.71
1219882--1220054	19	9.6	19	75	12	141	9	19	25	46	1.79
1219904--1219960	14	3.7	14	72	20	51	7	21	28	43	1.78
1219918--1220054	52	2.5	54	87	7	179	8	17	27	46	1.77
1219887--1220054	33	4.7	36	81	8	159	8	18	25	47	1.78
1221979--1222014	14	2.6	14	95	0	63	33	0	22	44	1.53
1222105--1222192	19	4.8	19	82	14	123	47	15	22	13	1.81
1222105--1222211	53	2.0	53	98	1	207	45	16	24	13	1.83
1222202--1222495	72	4.2	69	78	13	280	14	22	18	45	1.85
1222207--1222476	105	2.5	108	91	7	423	13	22	17	46	1.83
1222207--1222476	53	5.1	52	90	8	415	13	22	17	46	1.83
1224759--1224783	12	2.1	12	100	0	50	0	28	0	72	0.86
1224957--1225003	24	2.0	24	87	8	69	38	21	14	25	1.92
1225695--1225923	20	11.4	20	87	1	253	19	17	25	36	1.94
1225917--1225964	20	2.3	20	85	3	69	35	14	22	27	1.93
1227894--1227960	19	3.3	19	71	22	55	50	23	5	19	1.69
1232492--1232563	23	3.0	23	76	15	67	50	22	5	22	1.70
1232826--1232862	19	1.9	19	94	0	65	43	10	5	40	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1232885--1232931	16	2.7	18	84	15	55	72	2	4	21	1.12
1232744--1232963	117	1.8	116	88	7	325	55	5	4	35	1.42
1233789--1233823	3	11.7	3	100	0	70	68	0	0	31	0.90
1234317--1234358	16	2.4	19	84	15	63	54	0	0	45	0.99
1234427--1234451	12	2.1	12	100	0	50	60	0	0	40	0.97
1241614--1241647	17	2.0	17	94	0	59	26	26	11	35	1.91
1244929--1244966	19	2.0	19	94	0	67	36	18	26	18	1.94
1245845--1245959	57	2.0	58	89	3	178	24	21	21	32	1.98
1249778--1249812	16	2.1	18	89	10	56	40	11	8	40	1.72
1262956--1263086	51	2.6	51	97	0	244	27	17	28	26	1.98
1265334--1265382	13	3.8	13	82	17	66	81	6	12	0	0.86
1265334--1265382	12	3.8	12	84	12	62	81	6	12	0	0.86
1266560--1266653	35	2.6	38	81	8	106	28	13	13	43	1.83
1266733--1266920	65	2.9	65	85	4	209	24	22	14	38	1.92
1266975--1267329	131	2.7	131	81	6	369	28	30	16	23	1.97
1267529--1267572	3	14.7	3	90	0	52	25	2	6	65	1.28
1268120--1268178	20	2.9	21	82	12	70	71	8	16	3	1.25
1268140--1268178	21	1.9	20	89	5	60	74	5	17	2	1.12
1270668--1270771	33	3.2	33	93	1	174	44	16	7	31	1.76
1270766--1270807	21	2.0	21	90	0	66	50	7	11	30	1.66
1275400--1275550	26	5.5	26	68	20	85	42	3	5	49	1.42
1275350--1275527	30	6.4	29	69	19	112	42	3	7	46	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1275350--1275550	56	3.6	55	78	14	191	42	2	6	47	1.44
1278065--1278106	21	2.0	21	95	0	75	30	14	7	47	1.71
1278095--1278171	33	2.4	32	84	4	109	33	9	12	44	1.75
1279627--1279713	15	5.7	15	90	2	129	28	22	10	37	1.87
1281688--1281714	14	1.9	14	100	0	54	29	0	7	62	1.22
1281707--1281740	11	3.0	11	83	8	50	29	11	0	58	1.33
1286006--1286065	17	3.2	17	69	26	50	53	3	0	43	1.17
1286883--1286911	13	2.2	13	100	0	58	6	62	31	0	1.22
1287626--1287749	3	40.7	3	90	3	194	63	0	0	36	0.95
1287878--1289356	76	19.5	76	97	0	2762	37	19	20	22	1.95
1290406--1290552	59	2.5	59	95	2	260	20	22	19	38	1.94
1292570--1292873	83	3.7	83	94	1	538	35	20	14	29	1.92
1292570--1292873	166	1.8	166	99	0	599	35	20	14	29	1.92
1300053--1300112	17	3.2	17	69	26	50	53	3	0	43	1.17
1300913--1300941	13	2.2	13	100	0	58	6	62	31	0	1.22
1301653--1301761	3	36.0	3	81	9	132	61	1	0	36	1.07
1306527--1307050	44	12.0	44	87	1	655	35	24	22	17	1.95
1307489--1307593	39	2.8	37	78	13	110	73	4	6	15	1.21
1307489--1307616	38	3.4	38	81	9	129	74	4	6	14	1.18
1307715--1307770	2	29.0	2	89	7	89	53	0	0	46	1.00
1307708--1307774	8	9.7	7	84	10	61	53	0	1	44	1.09
1309855--1309899	21	2.1	21	91	0	72	33	26	24	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1315053--1315097	21	2.1	21	87	0	63	31	28	24	15	1.96
1316920--1316965	23	2.0	23	86	0	65	19	23	26	30	1.98
1324487--1324527	10	4.2	10	84	12	50	75	2	7	14	1.12
1324556--1324594	12	3.4	12	93	6	64	79	5	7	7	1.05
1324491--1324611	33	3.8	31	76	11	97	77	6	5	9	1.11
1324541--1324622	31	2.7	30	76	16	78	78	9	4	7	1.10
1325091--1325163	3	24.7	3	76	15	64	68	2	1	27	1.11
1325134--1325172	12	3.2	12	89	7	53	61	0	2	35	1.10
1325198--1325241	21	2.1	21	91	0	70	56	2	2	38	1.24
1325256--1325348	27	3.5	27	70	16	68	67	4	2	25	1.20
1326384--1326435	2	27.5	2	81	18	67	48	0	1	50	1.12
1326382--1326435	15	3.9	15	81	16	71	48	0	1	50	1.11
1326379--1326435	17	3.4	17	85	7	73	49	0	1	49	1.11
1326382--1326436	11	4.2	14	86	13	66	47	0	1	50	1.11
1330979--1331533	129	4.3	129	81	5	584	32	21	16	28	1.95
1330979--1331523	257	2.1	258	82	4	670	32	22	16	29	1.95
1331421--1331563	41	3.5	41	72	5	135	34	20	19	24	1.96
1331417--1331615	83	2.4	83	85	2	267	35	19	19	25	1.95
1331319--1331712	212	1.9	211	83	5	519	32	21	17	28	1.96
1331636--1331745	41	2.7	39	74	12	105	32	20	16	30	1.95
1331940--1331981	21	2.0	21	86	9	59	50	0	11	38	1.40
1331972--1332098	30	4.1	31	78	12	118	45	3	5	44	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1331990--1332093	35	3.2	34	75	15	105	48	3	3	44	1.39
1333001--1333076	36	2.1	37	85	7	102	44	0	6	48	1.28
1337759--1337878	17	6.9	17	75	7	98	33	10	10	45	1.74
1337791--1337878	35	2.5	35	90	0	131	34	10	12	43	1.76
1338760--1338789	2	15.0	2	100	0	60	50	0	0	50	1.00
1339590--1340301	114	6.3	114	81	2	801	38	13	9	38	1.77
1339590--1340350	227	3.4	224	80	5	802	38	13	8	38	1.77
1340983--1341052	21	3.3	20	86	7	95	41	21	17	20	1.90
1343858--1343893	17	2.1	17	89	0	54	33	2	22	41	1.68
1344099--1344166	34	2.0	34	100	0	136	38	14	17	29	1.90

Tables:   1   2   3   4   5   6   7   8   9