genome.fa.s7825.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007825.1 Hibiscus syriacus cultivar Beakdansim tig00110163_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2082551

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  10  of  11  ( 1245 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1747417--1747473	14	4.1	14	76	13	55	28	0	22	49	1.50
1747616--1747667	25	2.0	26	85	3	70	48	3	3	44	1.39
1747730--1747778	21	2.4	22	80	13	59	10	4	6	79	1.03
1752575--1752625	25	2.0	26	84	3	68	41	1	5	50	1.37
1755331--1755659	164	2.0	163	95	3	599	31	20	13	34	1.91
1756651--1756806	63	2.5	62	82	11	185	32	20	19	26	1.97
1757372--1757593	31	7.2	31	97	0	417	38	11	15	33	1.84
1761680--1761720	6	6.8	6	88	0	64	14	48	19	17	1.81
1768097--1768122	13	2.0	13	100	0	52	53	0	0	46	1.00
1769497--1769547	21	2.4	21	90	0	75	33	27	21	17	1.96
1769576--1769625	19	2.5	21	80	12	68	18	22	26	34	1.96
1773280--1773317	18	2.2	18	85	4	51	31	2	2	63	1.22
1773290--1773323	18	1.9	17	94	5	59	29	0	2	67	1.05
1777656--1777716	30	2.0	30	96	0	113	22	8	16	52	1.70
1778573--1778625	21	2.3	23	84	9	65	47	1	1	49	1.23
1778608--1778700	14	6.4	14	68	13	55	47	4	0	48	1.21
1778905--1778973	29	2.2	33	82	14	85	42	1	4	52	1.30
1779314--1779659	20	17.4	20	85	4	441	33	26	19	20	1.96
1780581--1780605	12	2.1	12	100	0	50	72	0	28	0	0.86
1782135--1782224	14	5.7	14	74	23	81	42	23	25	8	1.83
1782127--1782241	33	3.5	33	95	0	212	45	20	24	9	1.81
1782134--1782246	19	6.8	18	72	23	88	43	22	24	9	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1782258--1782312	14	3.6	14	73	21	56	9	25	23	41	1.83
1782242--1782312	33	2.2	33	94	0	124	8	22	25	43	1.81
1782253--1782334	33	2.5	33	89	2	119	9	25	21	42	1.84
1782265--1782353	20	4.8	20	72	19	75	12	24	19	43	1.85
1782433--1782503	33	2.2	33	92	0	115	47	18	22	11	1.80
1782684--1782738	22	2.5	22	81	0	74	20	16	40	23	1.91
1782884--1783076	20	9.6	20	82	5	219	19	19	25	35	1.95
1782884--1783076	60	3.2	60	83	0	251	19	19	25	35	1.95
1783132--1783183	20	2.6	20	96	0	95	21	13	26	38	1.90
1787163--1787217	27	2.0	27	92	0	92	21	14	23	40	1.90
1787407--1787442	17	2.1	17	100	0	72	16	0	41	41	1.48
1787577--1787681	30	3.5	30	87	6	142	38	0	14	47	1.44
1787623--1787677	15	3.6	16	70	20	55	41	0	14	43	1.45
1787734--1787765	15	2.1	16	94	5	57	37	0	6	56	1.25
1789904--1789952	25	2.0	25	100	0	98	44	16	0	38	1.48
1789905--1789952	14	3.6	14	83	16	75	45	16	0	37	1.48
1789920--1790221	60	5.2	60	88	8	444	46	12	0	40	1.42
1789974--1790125	21	7.5	22	66	22	75	44	15	0	40	1.46
1789924--1790770	120	7.6	113	85	11	1064	46	12	0	40	1.44
1790104--1790370	50	5.2	50	92	5	383	46	12	0	40	1.42
1790254--1790499	60	4.1	60	94	0	413	45	13	0	40	1.46
1790209--1790408	21	9.4	20	65	21	70	46	13	0	40	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1790429--1790510	25	3.3	25	66	8	69	47	13	0	39	1.43
1790444--1790520	21	3.3	21	66	27	57	50	10	0	38	1.37
1790433--1790646	49	4.3	49	97	0	401	47	11	0	41	1.40
1790630--1790717	21	4.3	21	67	18	60	45	13	0	40	1.44
1790581--1790770	60	3.2	60	95	0	337	45	13	0	40	1.48
1793633--1793692	26	2.3	25	77	8	66	40	1	6	51	1.38
1793928--1793987	17	3.3	17	73	15	57	50	11	0	38	1.39
1794480--1794528	21	2.3	21	85	3	71	53	16	0	30	1.43
1795033--1795059	13	2.1	13	100	0	54	22	37	18	22	1.95
1795038--1795106	29	2.6	27	80	13	79	20	37	23	18	1.94
1795347--1795372	12	2.2	12	100	0	52	23	30	23	23	1.99
1796998--1797024	2	13.5	2	100	0	54	48	0	0	51	1.00
1797132--1797190	29	2.0	30	90	3	93	49	15	15	20	1.80
1797975--1798351	101	3.8	100	77	8	327	39	9	13	37	1.78
1798465--1798503	20	1.9	21	89	5	62	35	5	15	43	1.69
1798643--1799059	188	2.2	185	81	7	470	34	16	10	38	1.83
1799215--1799438	43	5.3	43	76	13	180	33	20	22	23	1.97
1799437--1799471	17	2.1	17	94	0	61	25	22	20	31	1.98
1803716--1804158	41	10.6	41	80	4	440	34	18	18	27	1.95
1803716--1804158	125	3.5	123	80	5	469	34	18	18	27	1.95
1803757--1804161	166	2.4	166	89	2	600	33	18	19	28	1.95
1810510--1810548	17	2.3	17	95	0	69	25	20	7	46	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1821374--1821418	21	2.1	21	88	8	65	46	2	6	44	1.42
1824942--1824982	21	2.0	20	90	4	64	29	17	29	24	1.97
1826159--1826230	22	3.3	21	75	5	63	27	20	18	33	1.96
1832114--1832202	40	2.2	40	95	0	160	23	22	30	23	1.99
1839720--1839756	18	2.1	18	100	0	74	48	32	8	10	1.67
1847145--1847365	109	2.0	111	97	2	419	23	13	19	43	1.86
1848305--1848638	167	2.0	167	98	1	643	34	7	18	38	1.80
1849850--1849897	17	2.7	18	74	9	53	41	2	4	52	1.32
1851911--1851974	32	2.0	32	96	3	121	25	43	9	21	1.82
1854067--1854271	63	3.3	63	98	0	394	36	20	15	27	1.93
1855769--1855797	14	2.1	14	93	6	51	62	6	3	27	1.37
1860616--1860759	72	2.0	72	94	5	256	32	25	2	40	1.67
1873997--1874631	127	5.0	127	92	0	1063	21	24	20	33	1.97
1875061--1875161	34	3.0	34	86	0	157	37	4	5	51	1.48
1875673--1875745	21	3.5	21	83	7	94	23	21	34	20	1.97
1877373--1877430	24	2.5	23	83	8	64	62	5	0	32	1.18
1877553--1877638	32	2.6	34	77	9	95	58	1	0	40	1.06
1877525--1877626	32	3.3	32	77	9	88	59	0	0	40	0.97
1878157--1879035	439	2.0	440	98	0	1715	32	19	22	25	1.97
1882032--1882097	16	4.1	16	80	7	80	21	7	56	15	1.64
1882021--1882091	33	2.2	32	89	2	106	22	9	50	16	1.74
1882032--1882092	15	3.9	15	83	10	77	21	8	54	16	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1882077--1882169	45	2.1	45	97	0	177	20	8	50	20	1.74
1882602--1882645	21	2.1	21	86	0	61	29	0	13	56	1.38
1882615--1882680	28	2.4	28	77	10	80	33	0	9	57	1.30
1883187--1883231	21	2.2	21	84	4	56	35	0	8	55	1.31
1883491--1883549	26	2.3	25	75	18	66	47	8	3	40	1.51
1886428--1886729	26	12.2	26	78	13	248	43	2	9	44	1.50
1886373--1886765	124	3.2	124	93	1	668	43	2	9	45	1.48
1886431--1886781	14	26.1	14	69	18	119	43	2	9	45	1.48
1886734--1886807	38	1.9	38	83	5	96	45	4	5	44	1.45
1886989--1887021	17	1.9	17	93	0	57	36	6	12	45	1.66
1886935--1887014	24	3.3	23	71	21	67	38	3	8	48	1.52
1889168--1889198	15	2.1	14	94	5	53	54	6	0	38	1.26
1889251--1889332	34	2.6	32	81	12	89	48	14	0	36	1.44
1889372--1889462	45	2.0	47	87	8	134	47	12	0	40	1.41
1889666--1889718	21	2.5	21	96	0	97	1	35	0	62	1.06
1889689--1889720	17	1.9	16	93	6	55	0	37	0	62	0.95
1889722--1889765	23	1.9	23	95	0	79	9	38	6	45	1.63
1889781--1889832	25	2.1	25	100	0	104	26	34	11	26	1.91
1890019--1890155	29	4.8	29	94	3	233	22	32	30	14	1.94
1890190--1890412	35	6.0	35	78	12	239	20	21	31	25	1.98
1890196--1890426	117	2.0	117	98	0	444	20	23	30	25	1.98
1890424--1890482	29	2.0	29	83	6	75	16	32	32	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1894201--1894225	13	1.9	13	100	0	50	8	0	16	76	1.02
1897866--1897950	43	2.0	42	97	2	161	25	8	14	51	1.69
1903664--1903734	35	2.0	35	100	0	142	52	8	11	28	1.66
1908052--1908079	12	2.3	12	100	0	56	46	14	17	21	1.84
1910002--1910078	39	2.0	39	100	0	154	25	25	22	25	2.00
1917543--1917587	21	2.1	21	87	0	63	42	8	0	48	1.34
1926571--1926775	50	4.1	51	81	8	235	44	14	15	25	1.83
1926573--1926858	51	5.8	51	78	9	263	46	13	13	25	1.81
1937313--1937366	17	3.1	18	74	15	51	42	1	0	55	1.10
1937289--1937350	25	2.5	24	80	12	63	40	1	1	56	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11