genome.fa.s7825.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007825.1 Hibiscus syriacus cultivar Beakdansim tig00110163_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2082551

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  7  of  11  ( 1245 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1162189--1162221	15	2.2	15	100	0	66	27	33	24	15	1.95
1162317--1162379	29	2.2	29	100	0	126	17	20	17	44	1.87
1162395--1162430	12	3.0	12	87	0	54	36	22	5	36	1.78
1162738--1162914	64	2.8	64	84	1	221	25	20	22	31	1.98
1162738--1162963	64	3.5	64	82	4	217	27	20	20	31	1.98
1164270--1164333	23	2.8	23	88	4	94	29	26	25	18	1.98
1164352--1164566	103	2.1	103	96	0	394	36	23	12	27	1.91
1166440--1166489	2	25.0	2	91	0	82	50	4	0	46	1.20
1166863--1166928	23	2.9	23	86	0	87	31	25	22	19	1.98
1166942--1167152	103	2.0	103	91	1	343	38	22	12	26	1.90
1167424--1167468	15	3.0	15	83	0	54	37	20	0	42	1.52
1168481--1168621	65	2.2	63	81	6	158	26	17	18	36	1.93
1171792--1171843	25	2.1	25	82	7	61	48	11	0	40	1.40
1172216--1172281	23	2.9	23	83	0	87	31	24	22	21	1.98
1172816--1172850	15	2.3	15	90	0	52	34	22	0	42	1.54
1173507--1173552	23	1.9	25	86	8	69	45	17	6	30	1.73
1173849--1173988	64	2.2	63	83	5	165	25	17	18	37	1.93
1178713--1178776	23	2.8	23	85	0	92	28	26	26	18	1.98
1178916--1179064	74	2.0	74	100	0	298	34	18	6	40	1.77
1179653--1179809	64	2.5	64	82	6	167	26	19	21	33	1.96
1181238--1181308	29	2.4	29	83	2	88	35	16	5	42	1.72
1181219--1181308	30	3.0	29	79	4	90	38	13	4	43	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1197897--1198121	112	2.0	112	98	0	432	29	8	16	45	1.77
1197903--1198149	112	2.2	111	90	2	343	30	8	15	45	1.75
1198214--1198264	27	1.9	26	88	4	75	9	9	19	60	1.55
1203407--1203440	2	17.0	2	100	0	68	50	0	0	50	1.00
1209745--1209928	44	4.2	44	79	3	194	26	14	30	29	1.95
1209761--1209920	86	1.9	85	90	1	257	28	13	30	28	1.94
1214393--1214504	42	2.7	42	82	6	129	27	22	14	35	1.93
1216947--1217012	30	2.2	30	84	10	82	36	15	3	45	1.61
1218432--1218516	29	3.0	28	92	3	134	17	38	25	17	1.92
1218736--1218802	29	2.5	26	79	13	73	19	25	35	19	1.95
1218753--1218824	29	2.5	29	90	0	117	19	26	36	18	1.94
1219362--1219405	21	2.1	21	91	0	70	29	0	15	54	1.42
1220201--1220265	26	2.6	25	79	13	62	50	6	1	41	1.36
1223113--1223303	60	3.2	60	97	0	346	40	0	14	45	1.45
1223336--1223695	120	3.1	120	91	4	481	40	0	13	46	1.43
1223614--1223711	11	9.2	11	70	29	52	38	0	14	46	1.44
1223663--1223710	14	3.6	14	83	16	75	35	0	18	45	1.50
1223385--1223695	60	5.2	60	97	0	568	40	0	13	46	1.43
1225847--1225880	15	2.2	16	94	5	61	55	5	0	38	1.24
1225933--1226022	30	3.0	30	90	1	135	45	11	0	43	1.39
1225937--1225991	15	3.6	16	70	20	55	43	12	0	43	1.42
1226174--1226206	17	1.9	17	100	0	66	42	39	0	18	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1236592--1236635	2	22.5	2	95	4	81	50	0	0	50	1.00
1238200--1238257	14	4.4	13	78	16	57	72	1	5	20	1.13
1238736--1238765	16	1.9	15	93	6	51	13	26	40	20	1.89
1239067--1239127	29	2.1	28	84	3	77	45	4	4	44	1.46
1239091--1239349	36	7.2	36	77	15	227	44	5	4	45	1.47
1239033--1239307	103	2.7	102	79	12	289	45	4	4	46	1.40
1239167--1239230	29	2.2	29	85	0	92	42	3	7	46	1.48
1239093--1239393	73	4.1	74	79	10	273	44	5	4	45	1.48
1239196--1239393	39	5.2	37	79	9	190	44	6	3	45	1.43
1239939--1240284	80	4.3	80	91	1	512	23	21	26	27	1.99
1240450--1241666	106	11.5	106	94	0	2046	22	18	25	33	1.96
1244318--1244352	14	2.4	15	90	4	54	71	8	14	5	1.29
1245504--1245561	14	4.4	13	78	16	57	72	1	5	20	1.13
1246753--1246813	29	2.1	28	84	3	77	45	4	4	44	1.46
1246777--1247035	36	7.2	36	73	16	166	44	5	4	45	1.47
1246784--1247070	36	7.9	36	72	13	160	44	6	4	44	1.49
1246721--1246988	103	2.7	100	77	12	255	46	4	3	45	1.41
1246887--1246947	11	5.2	11	72	14	50	49	3	1	45	1.28
1246861--1246920	29	2.0	30	84	9	79	46	5	3	45	1.41
1246883--1247079	39	5.2	37	79	9	193	45	6	2	46	1.41
1246779--1247030	140	1.8	140	82	5	330	44	5	4	45	1.48
1247068--1247133	2	33.0	2	100	0	132	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1247624--1247709	8	11.2	8	71	14	65	29	0	1	69	0.96
1247624--1247713	22	4.0	22	83	2	117	30	0	1	68	0.96
1247616--1247709	15	6.2	15	72	15	77	29	0	1	69	0.96
1248617--1248650	2	17.0	2	100	0	68	50	0	0	50	1.00
1251544--1251618	32	2.3	32	81	0	114	18	26	32	22	1.97
1271709--1271760	26	2.0	26	100	0	104	38	7	34	19	1.80
1275022--1275053	15	2.1	16	94	5	57	40	6	18	34	1.76
1276894--1276950	24	2.3	24	82	14	80	22	12	14	50	1.75
1305001--1305047	14	3.4	14	82	11	60	23	36	31	8	1.85
1305096--1305200	29	3.6	29	89	0	165	23	27	34	14	1.94
1305574--1305617	21	2.1	21	91	0	70	29	31	15	22	1.95
1305582--1305775	83	2.3	83	92	0	325	32	23	20	23	1.98
1305673--1305794	62	2.0	62	88	3	183	32	21	21	24	1.98
1305582--1305775	21	9.3	21	74	12	170	32	23	20	23	1.98
1305582--1305791	41	5.1	41	71	11	160	32	22	20	23	1.98
1305798--1305920	41	3.0	42	86	4	178	21	20	26	30	1.98
1305787--1305924	21	6.6	21	81	6	174	22	21	26	28	1.99
1306616--1306732	19	5.7	19	75	13	108	35	24	18	21	1.96
1306663--1306738	21	3.6	21	77	13	93	34	27	19	18	1.95
1306623--1306732	42	2.7	42	92	2	179	36	25	18	20	1.94
1309281--1309310	2	15.0	2	100	0	60	50	0	0	50	1.00
1310229--1310298	36	1.9	37	94	2	124	62	2	0	34	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1315536--1315580	23	2.0	23	86	0	63	37	8	15	37	1.79
1316469--1316591	31	4.0	31	95	2	212	38	22	19	19	1.94
1318426--1318530	21	5.1	21	63	4	70	20	19	24	36	1.95
1318430--1318530	41	2.5	41	91	0	166	20	19	23	35	1.96
1318462--1318527	20	3.2	20	72	4	69	16	19	24	39	1.92
1318519--1318571	22	2.4	22	93	0	97	16	16	28	37	1.91
1318946--1319036	21	4.4	21	80	2	121	32	26	17	23	1.96
1318919--1319036	62	1.9	62	96	0	218	34	25	17	22	1.96
1318963--1319090	41	3.3	41	82	10	171	37	25	19	17	1.94
1318922--1319104	20	9.3	20	74	9	108	38	24	18	18	1.93
1319024--1319088	34	1.9	34	93	0	112	40	26	20	13	1.89
1319302--1319559	75	3.5	75	84	0	329	34	13	11	40	1.80
1319847--1320112	75	3.5	75	87	3	338	34	13	10	41	1.79
1320108--1320151	22	2.0	22	86	8	63	29	4	2	63	1.26
1328035--1328134	49	2.0	49	94	0	173	43	15	8	34	1.75
1330797--1330848	20	2.6	20	84	0	77	40	26	13	19	1.88
1330932--1330981	18	2.6	19	81	9	66	34	22	10	34	1.87
1331119--1331156	16	2.5	15	84	12	51	28	5	0	65	1.14
1331733--1331766	12	2.8	12	90	0	50	55	29	0	14	1.40
1331878--1331945	24	2.8	24	84	8	102	29	16	16	38	1.90
1334199--1334234	18	2.0	18	94	0	63	55	25	2	16	1.55
1334476--1334532	29	2.0	29	96	0	105	26	15	26	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1336059--1336177	21	5.7	21	80	10	136	21	18	36	23	1.95
1336471--1336529	21	2.8	21	92	0	91	38	27	11	22	1.89
1336471--1336587	21	5.5	22	73	9	75	35	31	11	22	1.89
1336604--1336649	21	2.2	21	84	0	56	30	39	13	17	1.87
1336770--1336864	42	2.3	42	84	0	118	18	16	33	30	1.94
1338338--1338403	19	3.4	20	87	6	91	50	19	18	12	1.78
1338403--1338441	20	2.0	20	94	0	69	12	17	15	53	1.72
1338976--1339024	20	2.5	20	89	0	71	22	12	20	44	1.84
1339015--1339064	20	2.5	20	80	0	64	28	18	18	36	1.94
1339056--1339114	20	2.9	20	94	2	100	32	10	23	33	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11