genome.fa.s7825.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007825.1 Hibiscus syriacus cultivar Beakdansim tig00110163_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2082551

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  6  of  11  ( 1245 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
983622--983651	11	2.9	10	90	9	51	86	0	13	0	0.57
985899--986239	114	3.0	114	94	0	574	33	15	20	31	1.94
988297--988462	54	3.1	54	94	0	287	36	16	24	22	1.94
988820--988898	22	3.6	22	89	0	113	32	16	13	36	1.88
989494--989538	24	1.9	23	82	13	56	51	6	24	17	1.70
989375--990235	113	7.6	113	83	6	988	38	13	18	29	1.89
989375--990113	225	3.3	223	91	4	1106	37	13	18	29	1.90
990035--990323	123	2.4	123	85	6	369	40	14	18	26	1.89
995698--995722	10	2.5	10	100	0	50	32	0	36	32	1.58
997134--997185	25	2.1	25	100	0	104	30	23	19	26	1.98
997876--997946	2	35.5	2	100	0	142	49	0	0	50	1.00
1007439--1007589	41	3.7	40	83	7	169	28	21	17	32	1.96
1007499--1007695	106	1.9	106	85	2	279	27	21	17	33	1.96
1007452--1007737	147	1.9	147	99	0	563	27	20	17	33	1.96
1007604--1007896	120	2.4	120	82	6	349	28	21	18	31	1.97
1007604--1007929	41	8.0	41	80	5	333	28	20	18	32	1.96
1008512--1008573	22	2.9	21	71	21	65	12	4	17	64	1.44
1008512--1008594	43	1.9	43	92	0	139	9	6	20	63	1.45
1008512--1008574	21	2.9	22	70	25	62	12	4	17	65	1.43
1010556--1010596	21	2.0	21	90	0	64	24	7	17	51	1.70
1010691--1011122	43	10.1	43	81	5	450	27	21	19	31	1.97
1010691--1011126	128	3.4	127	80	5	434	27	20	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1015273--1015333	20	3.1	19	77	11	68	27	36	24	11	1.90
1018792--1018853	27	2.3	26	86	2	88	30	8	12	48	1.70
1019684--1019727	3	16.0	3	77	17	51	34	0	0	65	0.93
1019686--1019727	22	2.0	21	90	4	66	33	0	0	66	0.92
1019684--1019728	16	2.8	16	89	3	63	35	0	0	64	0.94
1020910--1020950	12	3.5	12	78	15	50	7	4	7	80	1.02
1027200--1027260	21	3.2	21	61	29	55	44	21	4	29	1.73
1027162--1027266	35	3.0	35	94	2	176	46	19	5	28	1.72
1027207--1027265	20	3.2	20	63	22	56	47	20	5	27	1.71
1031774--1031878	34	3.0	35	90	6	160	45	18	5	30	1.72
1033633--1033746	57	2.0	57	98	0	219	42	6	24	27	1.78
1034282--1034750	250	1.9	242	89	6	728	41	17	13	28	1.87
1035497--1035527	14	2.2	14	100	0	62	51	0	12	35	1.40
1052382--1052428	24	2.0	24	91	0	76	46	4	6	42	1.48
1055708--1055753	12	3.8	12	82	0	56	67	0	10	21	1.21
1056272--1056325	26	2.1	26	82	3	65	33	14	22	29	1.94
1057538--1057635	46	2.1	46	90	7	155	32	19	19	28	1.96
1058798--1058903	36	3.1	36	86	10	159	12	13	38	35	1.82
1058798--1058902	31	3.2	31	83	12	147	12	12	39	36	1.81
1059263--1059309	18	2.7	18	90	3	69	29	29	8	31	1.87
1060094--1060202	34	3.3	32	82	7	137	27	16	11	44	1.83
1060244--1060536	134	2.1	139	80	6	337	20	20	12	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1061153--1061219	12	5.8	12	74	10	59	64	1	13	20	1.36
1061737--1061767	16	1.9	16	93	0	53	74	3	12	9	1.19
1061851--1061903	24	2.3	23	87	9	72	64	13	1	20	1.38
1061851--1061903	23	2.2	24	83	9	65	64	13	1	20	1.38
1062925--1062965	16	2.6	16	100	0	82	24	21	7	46	1.77
1063713--1063753	21	2.0	21	85	0	55	58	14	7	19	1.59
1066158--1066182	2	12.5	2	100	0	50	52	0	0	48	1.00
1066370--1066482	60	1.9	60	83	3	147	35	16	2	45	1.62
1067894--1068113	51	4.3	50	89	4	325	25	13	14	46	1.80
1067894--1068113	101	2.2	102	89	3	336	25	13	14	46	1.80
1087043--1087082	19	2.1	19	100	0	80	20	27	10	42	1.83
1088737--1088761	12	2.1	12	100	0	50	52	8	8	32	1.60
1095535--1095581	24	2.0	24	95	0	85	38	4	10	46	1.58
1105710--1105778	31	2.2	31	89	0	102	24	23	14	37	1.92
1107687--1107754	31	2.2	31	92	5	111	35	16	27	20	1.94
1117119--1117144	6	4.3	6	100	0	52	46	0	0	53	1.00
1118100--1118347	117	2.1	117	93	0	424	22	27	19	31	1.98
1120265--1120329	22	3.2	22	64	28	61	43	6	15	35	1.72
1120257--1120333	39	2.0	39	100	0	154	40	5	18	36	1.73
1121721--1121787	20	3.3	20	68	4	62	10	22	26	40	1.86
1121693--1121787	41	2.3	41	90	0	145	16	21	24	37	1.93
1121775--1121799	12	2.1	12	100	0	50	8	28	24	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1121810--1121854	6	7.5	6	100	0	90	33	51	15	0	1.44
1122346--1122377	6	5.7	6	89	10	50	0	18	50	31	1.48
1122469--1122611	41	3.5	41	90	6	227	39	22	22	15	1.91
1122538--1122778	61	3.9	61	74	5	236	37	22	20	19	1.94
1122497--1122712	102	2.1	102	92	1	353	38	22	21	17	1.93
1122599--1122778	41	4.4	41	93	0	315	36	22	18	21	1.95
1122475--1122730	82	3.1	82	83	5	259	37	23	20	18	1.94
1122599--1122778	82	2.2	82	97	0	351	36	22	18	21	1.95
1124270--1124339	31	2.3	31	85	5	88	28	21	12	37	1.90
1124286--1124346	31	2.0	31	96	0	113	24	21	16	37	1.93
1125757--1125840	31	2.7	31	88	0	132	23	20	19	36	1.95
1126139--1126176	14	2.7	14	91	0	58	18	10	10	60	1.57
1126850--1126910	32	1.9	32	89	0	95	40	24	16	18	1.90
1126882--1127162	20	14.5	19	81	10	225	38	26	16	18	1.92
1126934--1127162	40	5.8	39	88	5	300	37	25	16	20	1.93
1126934--1127162	60	3.8	60	93	2	349	37	25	16	20	1.93
1127843--1127889	24	2.0	24	87	8	69	25	14	21	38	1.92
1130315--1130479	33	4.7	34	81	13	183	46	18	21	13	1.83
1130329--1130517	19	10.7	19	78	17	219	45	17	21	15	1.85
1130315--1130517	52	3.9	52	86	10	281	45	18	21	14	1.85
1130526--1130675	19	8.4	19	80	14	194	14	22	17	46	1.84
1130507--1130675	52	3.2	52	96	0	311	14	23	17	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1130782--1130818	14	2.6	14	91	0	65	45	21	0	32	1.52
1132799--1132855	14	3.7	14	77	20	60	45	22	21	10	1.82
1132780--1132872	33	2.8	33	95	0	168	47	21	20	10	1.80
1132743--1132877	19	7.6	19	76	16	128	45	23	19	11	1.82
1132873--1132964	33	2.8	33	91	3	141	7	19	27	45	1.77
1132873--1133001	19	7.3	19	73	17	116	7	17	27	46	1.76
1134637--1134726	14	5.7	14	72	23	72	43	23	24	8	1.82
1134629--1134742	33	3.5	33	96	1	212	45	21	23	9	1.81
1134648--1134747	19	5.8	19	71	22	96	43	22	25	10	1.84
1134759--1134815	14	3.7	14	75	20	60	8	24	22	43	1.81
1134773--1134861	19	4.9	19	72	15	80	11	23	21	43	1.84
1134743--1134861	33	3.4	33	88	6	157	10	22	22	44	1.82
1134953--1135023	33	2.2	33	92	0	115	47	18	22	11	1.80
1135204--1135258	22	2.5	22	81	0	74	20	16	40	23	1.91
1135405--1135558	20	7.7	20	81	7	168	18	18	26	37	1.93
1135404--1135558	40	3.8	40	82	4	186	18	18	26	37	1.93
1135545--1135627	21	4.0	21	73	6	78	25	16	24	33	1.96
1135525--1135623	42	2.4	43	77	11	100	21	18	23	37	1.94
1136462--1136508	14	3.5	13	77	11	51	48	0	2	48	1.13
1136895--1136927	17	1.9	17	88	11	50	57	0	0	42	0.98
1143359--1143392	17	2.0	17	100	0	68	11	17	11	58	1.62
1148831--1148958	65	2.0	65	98	0	247	51	4	10	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1149091--1149193	51	2.0	51	100	0	206	47	15	5	31	1.69
1152060--1152130	18	4.1	17	78	5	70	45	9	9	35	1.71
1154804--1154840	17	2.1	18	85	14	51	45	29	0	24	1.53
1155267--1155314	15	3.2	15	96	0	87	29	33	22	14	1.94
1155410--1155472	29	2.2	29	100	0	126	17	20	17	44	1.87
1155488--1155523	12	3.0	12	87	0	54	36	22	5	36	1.78
1155831--1156007	64	2.8	64	84	1	194	25	20	22	31	1.98
1155894--1156055	64	2.5	63	86	7	204	26	22	19	31	1.98
1161726--1161762	17	2.1	18	85	14	51	45	29	0	24	1.53
1162182--1162220	15	2.4	17	79	20	55	25	33	25	15	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11