genome.fa.s7825.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007825.1 Hibiscus syriacus cultivar Beakdansim tig00110163_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2082551

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  4  of  11  ( 1245 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
483205--483321	36	3.1	36	66	17	92	41	6	6	44	1.58
483215--483343	42	3.2	42	69	20	130	40	6	6	47	1.54
483444--483476	16	2.1	16	94	0	57	30	12	27	30	1.92
494217--494372	81	1.9	81	90	0	249	30	13	10	45	1.77
503231--503261	14	2.2	14	94	0	53	41	0	12	45	1.42
503967--504004	20	2.0	20	94	5	69	10	26	34	28	1.90
504816--504848	3	11.0	3	100	0	66	66	33	0	0	0.92
506932--507022	23	4.0	23	97	0	164	25	26	28	19	1.99
506990--507304	149	2.1	149	94	2	553	34	21	17	26	1.96
508198--508232	18	1.9	18	88	11	54	22	17	5	54	1.64
508724--508848	64	1.9	66	90	6	202	27	20	16	35	1.94
508724--508884	64	2.5	63	84	5	198	27	21	17	33	1.96
512013--512057	23	2.0	23	90	0	72	24	26	26	22	2.00
512025--512339	149	2.1	149	92	2	526	34	21	17	26	1.95
513228--513262	18	1.9	18	88	11	54	22	17	5	54	1.64
513754--513914	64	2.5	63	80	5	180	27	21	17	33	1.96
516419--516769	112	3.1	112	92	0	567	45	13	14	26	1.81
516717--517231	162	3.1	162	88	6	699	43	13	15	27	1.83
516879--517253	182	2.1	182	94	0	651	44	14	15	26	1.84
517896--517943	23	2.1	23	88	0	69	37	16	8	37	1.79
529436--529465	15	2.0	15	93	0	51	56	0	0	43	0.99
531537--531664	64	2.0	64	100	0	256	32	10	20	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
534535--534576	22	2.0	21	86	13	59	66	19	2	11	1.34
537238--537291	17	3.7	14	79	15	65	53	27	12	5	1.61
539625--539801	88	2.0	88	100	0	354	49	13	12	24	1.77
540739--540782	2	22.0	2	100	0	88	50	0	0	50	1.00
542986--543032	13	3.5	13	72	16	51	23	0	21	55	1.44
543000--543045	14	3.4	14	71	17	51	19	0	28	52	1.47
542987--543045	27	2.2	27	100	0	118	22	0	25	52	1.47
545592--545669	31	2.5	31	93	0	129	56	16	8	17	1.65
563772--563804	16	2.1	16	94	0	57	18	18	36	27	1.94
564031--564134	47	2.2	47	88	6	149	41	31	15	11	1.83
564065--564175	16	7.1	16	67	8	57	46	28	14	9	1.76
564528--564617	26	3.5	26	93	0	153	33	32	23	11	1.90
568756--568787	2	16.0	2	100	0	64	50	0	0	50	1.00
575241--575345	39	2.7	39	96	0	192	28	20	18	32	1.96
575662--575693	6	5.5	6	96	3	57	0	15	53	31	1.43
579143--579173	15	2.1	15	100	0	62	25	35	12	25	1.92
579328--579681	188	1.9	188	86	2	505	30	27	12	28	1.94
582618--582655	20	1.9	20	94	0	67	31	18	23	26	1.97
586997--587159	65	2.5	65	80	14	178	31	19	24	24	1.98
587147--587204	20	2.7	20	78	10	62	32	18	20	27	1.97
587860--587907	15	3.2	15	96	0	87	29	33	22	14	1.94
587992--588069	29	2.7	29	96	2	140	17	20	15	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
588081--588128	12	4.0	12	86	7	71	37	25	6	31	1.81
594037--594080	21	2.0	22	91	8	72	40	15	18	25	1.90
605747--605780	6	5.7	6	85	0	50	0	41	0	58	0.98
610521--610551	2	16.0	2	93	6	55	51	0	0	48	1.00
614715--614782	32	2.1	32	100	0	136	54	20	2	22	1.58
616278--616327	20	2.5	20	96	0	91	30	32	16	22	1.95
616462--616512	17	2.6	21	73	26	65	27	39	7	25	1.83
616472--616509	17	2.2	17	100	0	76	31	36	5	26	1.79
619444--619478	18	1.9	18	94	0	61	54	22	2	20	1.58
619649--619725	20	3.8	20	84	3	93	32	19	18	29	1.95
619649--619725	40	1.9	40	89	0	118	32	19	18	29	1.95
619731--619774	20	2.2	20	84	4	54	29	25	20	25	1.99
619769--619841	20	3.7	20	87	3	94	13	16	24	45	1.84
619764--619841	40	2.0	40	89	5	122	14	16	24	44	1.84
619889--620071	71	2.7	68	81	14	184	52	15	2	30	1.54
621318--621415	21	4.7	21	72	7	83	25	19	32	22	1.97
621326--621415	41	2.2	41	81	2	108	25	17	35	21	1.95
621907--621951	20	2.2	20	88	7	65	37	26	20	15	1.92
621956--622013	19	3.0	19	84	2	80	50	24	15	10	1.75
624031--624071	20	2.0	20	90	0	64	56	19	12	12	1.67
624094--624164	33	2.2	33	89	5	108	45	22	18	14	1.85
624547--624586	22	1.9	21	90	10	64	25	15	40	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624554--624599	22	2.1	22	87	0	65	23	15	41	19	1.89
624749--624862	20	5.7	20	87	0	147	27	20	27	25	1.99
633152--633250	3	33.0	3	87	4	146	36	0	2	61	1.07
635376--635861	244	2.0	242	98	0	945	30	21	19	27	1.98
636939--636992	26	2.1	26	100	0	108	33	33	7	25	1.84
637784--637819	7	5.1	7	89	0	54	44	0	0	55	0.99
645043--645069	2	13.5	2	100	0	54	51	0	0	48	1.00
645587--645844	75	3.4	75	84	0	327	41	10	13	33	1.80
645819--645890	23	3.1	23	89	0	108	40	13	12	33	1.83
645753--646228	121	4.0	121	84	3	512	38	12	14	34	1.84
646677--646734	28	2.1	28	96	0	107	39	10	12	37	1.77
646922--647198	108	2.6	108	88	0	383	35	15	12	35	1.87
650416--650455	14	3.1	13	82	10	55	40	0	2	57	1.12
650860--650922	29	2.1	29	85	5	81	33	9	9	47	1.68
655110--655209	40	2.5	40	90	0	155	23	20	32	25	1.98
655439--655478	16	2.5	16	100	0	80	35	15	27	22	1.94
655937--656021	36	2.3	37	80	17	113	45	3	3	47	1.37
662593--662633	3	14.0	3	84	5	57	60	0	2	36	1.10
662593--662633	12	3.5	11	93	3	64	60	0	2	36	1.10
662682--662735	22	2.4	24	75	12	60	27	3	24	44	1.70
662917--662960	23	1.9	23	90	0	70	27	25	25	22	2.00
666724--666826	31	3.3	31	93	0	161	35	12	11	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
667321--667428	50	2.1	52	96	3	202	50	10	1	37	1.47
670918--671079	29	5.5	29	73	10	105	35	1	14	48	1.54
684965--685072	33	3.2	34	80	11	98	34	0	3	62	1.13
684996--685068	34	2.2	33	85	7	96	38	0	1	60	1.06
685213--685266	17	3.2	17	72	0	54	31	0	3	64	1.11
686813--686898	21	4.1	21	88	5	120	19	32	25	22	1.97
687421--687518	34	2.9	34	87	0	133	56	4	3	36	1.34
687919--688672	128	5.9	128	95	1	1320	33	19	24	22	1.97
688743--688783	8	5.2	8	77	16	50	36	26	0	36	1.57
688736--688783	15	3.1	15	77	17	53	37	27	0	35	1.57
694618--694646	2	14.5	2	100	0	58	51	0	0	48	1.00
696214--696244	15	2.1	15	100	0	62	38	19	0	41	1.51
698974--699016	17	2.5	17	80	0	50	16	9	23	51	1.73
702664--702741	30	2.6	30	78	15	81	29	7	10	52	1.63
707762--707824	11	5.9	11	69	14	51	58	3	1	36	1.23
707869--707901	14	2.4	14	94	0	57	45	27	0	27	1.54
707868--707927	21	2.8	22	75	7	61	53	21	0	25	1.46
711956--712022	29	2.4	27	80	11	73	35	2	2	58	1.29
712053--712293	127	1.9	128	91	0	394	48	3	4	43	1.40
712275--712351	27	2.8	27	82	5	84	54	1	3	40	1.27
715079--715116	15	2.5	15	100	0	76	34	10	26	28	1.90
723581--723636	23	2.4	23	93	0	94	28	10	19	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
726842--726875	16	2.2	15	89	5	50	47	0	2	50	1.16
727249--727288	6	6.5	6	86	13	55	17	27	0	55	1.43
727316--727399	19	4.4	19	72	11	57	29	20	8	41	1.81
728433--728474	21	2.0	21	90	0	66	26	26	16	30	1.97
728658--728717	30	2.0	30	100	0	120	43	20	6	30	1.77
731314--731380	15	4.0	17	78	9	66	26	14	32	25	1.95
731517--731574	30	1.9	30	96	0	107	44	17	5	32	1.70
742255--742287	16	2.0	17	94	5	59	57	0	0	42	0.98
743461--743491	13	2.5	12	94	5	53	51	0	0	48	1.00
745826--746221	198	2.0	198	100	0	792	22	20	19	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11