genome.fa.s7825.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007825.1 Hibiscus syriacus cultivar Beakdansim tig00110163_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2082551

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1245 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193124--193189	17	3.8	17	82	6	78	22	19	16	40	1.91
193117--193207	35	2.6	35	77	3	94	21	19	15	42	1.88
193542--193571	15	2.1	15	93	6	53	70	0	0	30	0.88
197627--197716	3	30.0	3	85	0	117	40	1	0	58	1.05
198957--198998	14	2.8	15	85	7	59	19	2	7	71	1.20
199144--199177	13	2.8	12	86	8	50	67	0	0	32	0.91
199728--199795	28	2.4	28	80	5	73	32	5	0	61	1.20
210429--210481	11	4.6	11	88	11	72	86	0	13	0	0.56
210433--210481	10	4.8	10	85	10	64	87	0	12	0	0.54
211629--212305	83	8.2	83	97	0	1282	25	14	23	36	1.93
213088--213854	113	6.8	113	93	1	1132	36	14	18	30	1.91
213800--213878	36	2.2	36	95	0	140	49	10	20	20	1.77
214142--214270	6	21.5	6	93	0	195	38	0	0	61	0.96
214387--214430	16	2.8	16	100	0	88	6	56	18	18	1.62
215520--215561	14	2.8	15	85	7	59	19	2	7	71	1.20
215716--215746	16	1.9	16	93	0	53	64	0	0	35	0.94
215716--215746	14	2.2	14	94	0	53	64	0	0	35	0.94
218145--218186	14	2.8	15	85	7	59	19	2	7	71	1.20
218335--218367	17	1.9	17	100	0	66	69	0	0	30	0.88
219392--219439	25	1.9	25	100	0	96	64	12	8	14	1.49
222452--222485	12	2.9	12	86	4	52	50	8	11	29	1.69
223516--223541	3	8.7	3	100	0	52	0	30	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224698--224727	11	2.7	11	89	0	51	43	0	10	46	1.37
225713--225738	11	2.4	11	100	0	52	38	0	0	61	0.96
225907--225994	43	2.0	43	97	0	167	37	18	5	38	1.74
227073--227156	31	2.7	30	80	8	98	53	7	7	32	1.55
235658--235832	88	2.0	87	98	1	341	44	11	16	28	1.81
237567--237652	21	4.1	21	84	3	102	45	16	20	17	1.86
237567--237652	42	2.0	42	86	4	120	45	16	20	17	1.86
237617--237663	21	2.3	21	92	3	78	42	21	19	17	1.89
237902--237926	13	1.9	13	100	0	50	16	16	16	52	1.76
240313--240347	10	3.6	10	92	3	54	65	0	22	11	1.24
243049--243221	36	4.8	36	88	2	249	35	24	19	20	1.96
243049--243255	36	5.7	35	84	2	198	35	23	18	22	1.96
243593--243988	54	7.6	52	88	5	518	33	19	25	22	1.97
243577--244522	108	9.0	106	73	12	563	32	18	24	23	1.97
243787--244182	200	2.0	198	87	3	573	33	19	25	21	1.97
243953--244026	38	1.9	38	97	0	139	31	20	28	20	1.97
243897--244080	92	2.0	92	93	4	318	32	20	27	20	1.97
243850--244134	146	2.0	146	93	2	493	32	20	26	20	1.97
243994--244248	106	2.4	108	88	2	363	32	20	25	21	1.97
243994--244287	106	2.8	104	82	9	317	31	19	24	23	1.98
244235--244413	55	3.3	56	84	7	242	31	16	25	26	1.96
244260--244565	55	5.6	55	86	5	258	31	17	24	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
244247--244448	110	1.8	109	86	7	293	30	16	22	30	1.96
243996--244565	54	10.6	54	82	7	372	32	18	24	24	1.97
247881--248255	197	1.9	199	98	1	736	35	18	14	30	1.91
251465--251509	21	2.1	21	87	0	63	31	28	24	15	1.96
252394--252548	31	5.0	31	90	2	233	20	20	21	36	1.95
254283--254312	2	15.5	2	93	6	53	50	0	0	50	1.00
267532--267566	18	1.9	18	94	0	61	51	5	2	40	1.40
267646--267697	16	3.2	16	78	13	52	61	1	0	36	1.07
268402--268472	30	2.4	30	95	2	126	46	9	8	35	1.67
273305--273479	73	2.4	71	80	2	197	27	6	17	49	1.70
273481--273524	20	2.3	19	81	11	54	34	4	0	61	1.16
273598--273628	6	5.2	6	96	0	53	16	32	16	35	1.91
276853--276950	42	2.4	42	86	3	146	54	7	6	32	1.53
277315--277367	28	1.9	27	92	3	88	64	3	3	28	1.28
283333--283374	20	2.1	20	86	8	59	33	30	0	35	1.58
283657--283714	6	9.0	6	78	14	53	50	29	0	20	1.49
283667--283714	13	3.8	12	78	13	51	54	25	0	20	1.45
285559--285603	21	2.1	21	95	0	81	37	13	2	46	1.55
293428--293479	20	2.7	19	77	16	54	36	21	11	30	1.89
294468--294507	18	2.2	18	90	0	62	47	22	7	22	1.76
294973--295014	21	2.0	21	81	9	50	47	4	2	45	1.36
304091--304186	21	4.6	21	74	17	74	33	26	20	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304112--304199	41	2.1	41	95	0	158	31	27	20	20	1.97
304133--304199	20	3.3	20	78	12	82	29	28	20	20	1.98
305020--305073	24	2.2	24	93	0	90	20	18	20	40	1.91
307336--307370	18	1.9	18	94	0	61	54	25	2	17	1.57
307548--307788	20	12.7	20	77	11	202	35	21	19	23	1.96
307545--307829	40	7.6	39	74	13	206	36	20	19	23	1.95
307647--307832	73	2.5	73	88	1	255	36	20	20	23	1.96
307923--308002	30	2.4	34	80	20	114	55	15	3	26	1.57
307938--308003	30	2.2	30	100	0	132	54	13	3	28	1.54
309387--309494	21	5.1	21	74	11	87	25	18	35	20	1.95
309402--309494	42	2.2	42	82	3	116	25	16	37	20	1.93
309981--310075	20	4.8	20	79	7	95	37	21	18	22	1.94
310071--310107	19	1.9	19	100	0	74	48	29	16	5	1.68
310166--310218	20	2.7	19	82	8	70	15	22	24	37	1.92
310116--310260	74	2.0	74	91	0	236	22	21	19	36	1.95
310116--310252	34	3.9	34	74	11	121	21	21	20	35	1.96
310390--310451	31	2.0	31	87	9	90	51	17	8	22	1.71
312278--312333	20	2.8	20	86	0	76	50	23	16	10	1.76
312303--312368	20	3.3	20	85	2	80	34	25	21	18	1.96
312726--312798	22	3.3	22	90	0	110	21	13	42	21	1.88
312967--313073	20	5.3	20	84	6	144	22	20	28	28	1.99
312967--313094	61	2.1	61	91	0	202	21	19	28	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
313083--313135	20	2.7	20	93	0	88	22	18	18	39	1.92
313736--313797	32	1.9	32	90	0	97	9	25	27	37	1.87
327593--327626	17	2.0	17	88	0	50	38	8	2	50	1.49
340961--341017	28	2.0	30	83	13	75	50	0	7	42	1.29
355619--355709	44	2.1	44	95	0	164	42	13	13	30	1.82
361852--361924	21	3.5	21	75	14	87	32	28	19	19	1.96
361827--361962	42	3.2	42	88	4	195	34	22	19	23	1.96
361958--362010	21	2.5	21	93	0	88	16	20	32	30	1.95
362351--362404	22	2.5	22	84	0	72	29	18	20	31	1.96
366943--367014	36	2.0	37	86	2	101	31	12	11	44	1.77
367599--367756	21	7.8	20	72	7	86	38	25	17	18	1.92
367723--367897	20	8.7	19	77	6	107	36	25	19	18	1.94
367723--367896	40	4.3	39	80	4	143	36	25	19	18	1.95
367723--367896	60	2.9	60	81	2	188	36	25	19	18	1.95
367743--367894	40	3.8	38	82	9	144	35	25	19	19	1.95
368278--368348	33	2.2	33	86	0	97	12	23	15	47	1.80
368428--368533	21	5.6	20	70	16	91	45	18	25	10	1.81
368426--368504	21	3.8	21	79	12	92	45	16	26	11	1.81
368421--368537	41	3.1	38	79	14	136	46	17	26	10	1.80
368491--368544	14	3.5	14	73	22	54	42	24	25	7	1.80
368480--368549	33	2.1	33	97	0	131	47	20	25	7	1.75
368486--368560	33	2.3	33	92	0	123	46	24	22	6	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
368556--368653	19	5.7	19	70	22	81	10	24	22	42	1.84
368578--368667	14	5.7	14	74	23	81	8	25	23	42	1.83
368561--368675	33	3.5	33	95	0	212	9	24	20	45	1.81
370373--370751	93	4.1	93	97	1	726	22	12	18	45	1.83
370373--370753	184	2.1	185	97	1	728	22	12	18	45	1.83
370795--370922	19	7.3	19	73	17	116	45	28	17	8	1.78
370831--370922	33	2.8	32	90	6	141	45	28	18	7	1.76
370918--371052	19	7.6	19	75	16	128	11	19	23	45	1.82
370940--370996	14	3.7	14	77	20	60	10	21	22	45	1.82
370923--371015	33	2.8	33	95	0	168	10	20	21	47	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11