Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007825.1 Hibiscus syriacus cultivar Beakdansim tig00110163_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2082551

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1245 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1938307--1938341
2
17.5
2
100
0
70
0
48
0
51
1.00
1940485--1940519
2
17.5
2
100
0
70
48
0
0
51
1.00
1953199--1953248
2
25.0
2
100
0
100
50
0
0
50
1.00
1955308--1955368
24
2.5
24
91
2
104
42
8
0
49
1.32
1956677--1956703
8
3.4
8
100
0
54
66
0
0
33
0.92
1956734--1956786
19
2.7
19
77
8
54
66
3
0
30
1.10
1963989--1964034
23
2.0
23
100
0
92
26
21
17
34
1.95
1976251--1976295
23
2.0
23
86
0
63
26
26
26
20
1.99
1976263--1976578
150
2.1
149
95
1
571
33
22
18
25
1.96
1981817--1981865
2
24.5
2
100
0
98
48
0
0
51
1.00
1987753--1987856
40
2.6
40
85
0
154
37
27
15
19
1.92
1989600--1989786
85
2.2
84
93
2
320
37
10
11
40
1.76
1990624--1990669
24
1.9
24
90
0
74
65
15
4
15
1.43
1996734--1996787
21
2.6
21
81
0
72
51
20
0
27
1.47
2007920--2008025
45
2.3
46
79
10
112
37
19
14
28
1.91
2008427--2008513
39
2.3
39
92
4
142
47
16
18
18
1.83
2013382--2013462
29
2.8
29
90
3
128
18
19
16
45
1.85
2013914--2014136
64
3.5
64
81
6
204
27
20
18
33
1.96
2017661--2017685
12
2.1
12
100
0
50
36
0
24
40
1.55
2017684--2017764
29
2.8
29
92
3
137
45
16
20
17
1.85
2017849--2017882
15
2.3
15
94
0
59
14
20
32
32
1.93
2019989--2020047
9
6.2
9
79
11
64
11
35
20
32
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2019989--2020044
15
3.7
15
87
0
85
12
35
19
32
1.89
2033095--2033404
79
3.8
80
87
5
439
20
20
26
32
1.97
2033095--2033404
160
1.9
161
87
5
457
20
20
26
32
1.97
2048561--2048589
10
2.9
10
100
0
58
79
0
0
20
0.74
2049660--2049694
2
17.5
2
87
0
52
42
0
2
54
1.15
2058345--2058419
38
2.0
37
84
5
98
49
4
0
46
1.20
2062833--2062912
30
2.7
29
84
5
106
28
8
6
56
1.54
2066380--2066428
25
2.0
25
84
8
64
44
12
4
38
1.61
2066387--2066419
12
2.6
13
85
9
50
48
12
0
39
1.40
2068735--2068823
9
11.0
9
77
20
67
64
0
0
35
0.94
2068741--2068828
12
7.4
12
72
21
69
62
0
1
36
1.03
2068764--2068789
7
3.7
7
100
0
52
57
0
0
42
0.98
2068717--2068864
29
5.4
28
74
18
116
60
0
2
36
1.13
2068741--2068828
17
5.3
16
77
15
81
62
0
1
36
1.03
2068899--2068949
14
3.6
14
79
10
50
56
1
0
41
1.10
2068738--2068949
33
6.6
32
68
21
92
57
0
2
39
1.17
2070795--2070839
21
2.1
21
87
0
63
31
28
24
15
1.96
2071651--2071837
31
6.0
31
96
1
331
19
19
22
37
1.94
2074782--2074826
21
2.1
21
87
0
63
31
28
24
15
1.96
2075620--2075791
31
5.6
31
95
1
303
18
19
23
38
1.93
2076934--2077036
36
2.9
36
91
5
167
29
4
34
31
1.78
2079526--2079550
13
1.9
13
100
0
50
24
28
32
16
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2079555--2079594
19
2.1
19
85
0
53
5
17
50
27
1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!