genome.fa.s7825.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007825.1 Hibiscus syriacus cultivar Beakdansim tig00110163_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2082551

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  5  of  11  ( 1245 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747197--747244	24	2.0	25	83	4	62	58	0	2	39	1.10
747239--747281	16	2.7	16	79	13	52	46	0	4	48	1.22
755914--755978	20	3.5	20	68	23	68	13	32	29	24	1.94
755907--755977	36	2.0	35	94	2	124	16	29	30	22	1.96
770421--770464	22	2.0	22	95	0	79	34	18	25	22	1.96
770422--770471	22	2.3	22	89	0	73	34	18	24	24	1.96
771243--771281	18	2.2	18	90	4	62	64	2	2	30	1.21
775938--775963	2	13.0	2	100	0	52	50	0	0	50	1.00
776642--776693	18	2.8	19	88	5	79	51	0	17	30	1.45
785766--785810	23	2.0	23	86	8	65	60	0	4	35	1.17
786210--786254	18	2.5	18	77	0	54	26	13	6	53	1.64
797451--797660	116	1.8	115	82	1	267	31	17	19	32	1.94
798900--798961	23	2.6	23	84	7	79	45	11	3	40	1.56
798884--798958	26	3.0	26	80	5	84	46	12	5	36	1.64
803006--803045	20	2.0	20	100	0	80	30	20	15	35	1.93
803271--803349	29	2.7	29	96	3	142	37	11	18	31	1.87
805024--805069	25	1.9	25	82	8	60	32	8	8	50	1.64
811010--811070	23	2.6	24	79	7	72	29	26	26	18	1.98
811086--811303	103	2.1	103	94	0	382	37	23	12	26	1.91
812483--812526	21	2.1	21	86	0	61	15	27	27	29	1.96
820590--820650	29	2.1	30	84	3	79	36	18	4	40	1.72
824748--824778	13	2.4	13	94	0	53	83	0	9	6	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
824759--824814	25	2.3	25	81	3	78	83	7	1	7	0.86
825802--825827	7	3.7	7	100	0	52	38	0	0	61	0.96
825936--825989	21	2.3	23	87	12	76	42	7	0	50	1.30
825944--826007	24	2.4	27	78	19	73	42	6	0	51	1.27
825946--826009	27	2.5	24	80	12	74	43	6	0	50	1.27
825991--826049	25	2.3	27	82	5	77	40	1	0	57	1.09
826435--826475	19	2.2	19	91	4	66	17	4	0	78	0.93
826745--826831	15	5.8	15	93	0	138	52	0	0	47	1.00
826745--826874	30	4.2	30	80	12	147	46	0	2	50	1.13
826841--826874	14	2.4	14	95	0	59	38	0	0	61	0.96
826877--826919	22	2.0	22	100	0	86	34	0	13	51	1.42
826922--826969	22	2.4	18	73	23	51	33	0	14	52	1.42
826855--826968	54	2.1	53	98	1	219	35	0	12	52	1.39
826899--827048	80	1.9	80	97	0	282	33	0	14	52	1.41
827011--827053	22	2.0	22	95	0	77	37	0	11	51	1.39
827077--827137	31	2.0	31	90	0	95	44	8	6	40	1.60
827575--827618	21	2.1	21	91	0	70	59	0	2	38	1.10
828280--828326	18	2.5	19	80	16	53	29	6	8	55	1.55
829966--830013	21	2.3	21	85	0	60	25	39	12	22	1.89
830023--830102	21	3.8	21	93	3	117	18	36	23	21	1.95
830612--830708	33	2.9	34	85	3	133	55	4	3	37	1.35
830610--830715	34	3.2	33	82	8	133	54	4	2	37	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
831094--831678	125	4.8	126	91	7	937	31	20	26	22	1.98
834761--834798	13	3.0	13	88	3	60	44	0	0	55	0.99
839384--839438	15	3.6	15	82	4	74	43	12	12	30	1.80
839387--839436	16	3.2	16	80	5	66	44	12	10	34	1.75
839835--839864	13	2.3	13	94	0	51	46	10	3	40	1.54
839875--839973	33	3.0	33	94	1	164	46	15	6	32	1.70
839968--840007	21	1.9	21	94	0	71	47	7	15	30	1.72
842309--842354	12	3.6	12	81	16	56	17	19	17	45	1.85
842308--842347	15	2.9	14	85	14	57	20	17	15	47	1.83
842454--842478	13	1.9	13	100	0	50	16	8	16	60	1.58
847483--847545	31	2.0	31	100	0	126	22	15	22	39	1.92
866017--866229	103	2.1	103	96	0	390	26	14	23	36	1.93
866245--866331	23	3.8	23	85	0	111	19	26	24	29	1.98
869536--869580	21	2.1	21	87	0	63	31	28	24	15	1.96
871263--871468	103	2.0	103	92	0	340	27	13	22	36	1.91
871492--871554	23	2.7	23	90	0	90	19	26	26	26	1.99
875592--875644	20	2.6	20	84	3	79	33	15	0	50	1.44
876670--876763	31	3.0	31	84	9	120	40	23	17	19	1.91
885697--885727	2	15.5	2	100	0	62	51	0	0	48	1.00
887125--887223	3	33.0	3	85	0	126	32	3	0	64	1.09
888579--888608	14	2.2	14	94	5	53	16	0	6	76	0.99
899977--900059	1	83.0	1	82	0	103	91	0	8	0	0.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
899976--900059	10	7.6	11	89	10	120	90	0	9	0	0.45
901041--901365	52	6.2	52	92	2	528	25	14	22	37	1.92
901315--901679	83	4.4	83	99	0	712	29	13	21	35	1.91
902235--903012	114	6.8	114	92	1	1224	37	14	19	28	1.91
902232--903012	227	3.4	228	91	1	1275	37	13	19	28	1.91
902246--903012	341	2.2	341	93	0	1322	37	13	19	28	1.91
903261--903342	3	28.0	3	85	4	114	32	3	0	63	1.12
904717--904765	24	2.1	22	85	7	62	40	2	2	55	1.23
906224--906268	21	2.1	21	83	0	54	35	0	17	46	1.49
909554--909642	29	3.0	28	72	15	81	37	15	3	43	1.64
913960--914007	25	2.0	25	88	8	73	54	8	4	33	1.50
914394--914475	29	2.8	29	71	12	69	32	20	6	40	1.77
915782--915829	21	2.3	21	85	0	69	25	10	0	64	1.25
915853--915897	21	2.1	21	88	8	65	60	0	0	40	0.97
917477--917512	18	2.0	18	100	0	72	38	22	5	33	1.77
920555--920610	29	1.9	29	85	7	78	35	5	3	55	1.40
920764--920833	12	5.7	12	70	11	52	42	1	10	45	1.46
921603--921692	31	3.0	31	81	13	109	45	5	16	32	1.71
921603--921688	29	2.9	30	79	16	99	46	5	16	31	1.70
922041--922649	304	2.0	304	97	0	1155	33	11	18	37	1.86
924076--924100	6	4.2	6	100	0	50	52	0	0	48	1.00
924180--924277	30	3.3	28	70	14	72	59	10	13	17	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
925682--925733	3	16.7	3	88	7	77	67	1	0	30	1.02
925683--925733	13	3.8	13	94	5	84	68	1	0	29	1.00
930185--930220	17	2.2	17	95	5	65	11	19	13	55	1.68
930377--930418	9	4.4	9	85	11	57	85	4	2	7	0.80
930380--930417	20	1.9	20	94	0	67	84	5	2	7	0.86
930378--930428	26	1.9	27	88	4	77	80	5	3	9	1.01
931828--931862	14	2.5	14	100	0	70	37	14	28	20	1.91
935702--935742	21	1.9	22	85	5	57	73	0	4	21	1.02
941029--941068	5	8.0	5	100	0	80	20	0	20	60	1.37
941504--941554	22	2.3	22	90	6	77	25	7	19	47	1.76
941552--941620	23	3.0	23	80	0	84	17	21	26	34	1.95
944652--944687	17	2.1	17	89	0	54	25	27	25	22	2.00
948687--948715	14	2.1	14	100	0	58	34	31	6	27	1.83
954849--954898	2	25.5	2	95	4	93	50	0	0	50	1.00
956101--956173	23	3.2	23	84	0	101	39	19	5	35	1.75
955698--959450	482	7.8	489	90	5	6000	40	10	7	41	1.68
956591--956663	23	3.2	23	88	0	101	39	19	5	35	1.75
957073--957145	23	3.2	23	88	0	110	41	20	4	34	1.72
957546--957618	23	3.2	23	88	0	110	41	20	4	34	1.72
958036--958079	23	1.9	23	95	0	79	43	20	0	36	1.52
958503--958552	23	2.2	23	92	0	82	38	22	6	34	1.78
958975--959032	23	2.5	23	88	0	80	37	17	6	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
955698--959450	955	3.9	935	89	7	5608	40	10	7	41	1.68
963082--963315	120	2.0	120	93	0	405	39	14	12	32	1.84
962911--963495	300	2.0	300	93	2	1007	35	16	13	33	1.88
963193--963775	180	3.2	182	89	5	887	34	16	14	34	1.89
966407--967534	198	5.7	200	94	2	1949	30	18	14	35	1.91
966407--967534	395	2.8	396	93	3	1925	30	18	14	35	1.91
970837--970897	20	3.1	19	79	9	68	18	14	11	55	1.68
970647--971095	181	2.5	182	91	0	693	25	16	14	43	1.86
975884--975908	13	1.9	13	100	0	50	60	8	16	16	1.58
980298--980351	14	3.8	14	82	4	63	24	14	9	51	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11