genome.fa.s7825.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007825.1 Hibiscus syriacus cultivar Beakdansim tig00110163_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2082551

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1245 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372980--373015	14	2.6	14	95	0	63	33	0	22	44	1.53
373122--373218	19	5.4	19	85	12	150	46	17	21	14	1.84
373227--373394	19	9.6	19	76	18	177	14	23	17	44	1.86
373122--373237	52	2.2	52	100	0	232	44	18	23	13	1.85
373233--373394	33	4.7	33	74	16	159	14	22	17	45	1.85
373227--373394	52	3.2	52	97	0	309	14	23	17	44	1.86
373453--373550	19	5.4	19	84	13	143	45	17	22	14	1.84
373453--373569	53	2.2	53	98	1	227	44	17	23	13	1.85
375888--375912	12	2.1	12	100	0	50	0	28	0	72	0.86
376087--376133	24	2.0	24	87	8	69	38	21	14	25	1.92
376816--377065	20	12.5	20	86	1	268	20	17	24	37	1.93
377052--377134	21	4.0	21	73	6	78	25	16	24	33	1.96
377032--377130	42	2.4	43	77	11	100	21	18	23	37	1.94
389337--389376	21	1.9	21	85	10	55	35	10	2	52	1.48
391263--391350	38	2.3	40	80	11	112	47	0	1	51	1.08
391371--391414	12	3.6	11	85	14	52	13	15	47	22	1.81
394273--394696	103	4.1	103	99	0	830	26	13	23	36	1.92
394713--394772	23	2.6	23	89	0	84	20	28	28	23	1.99
394703--394780	23	3.3	23	78	1	75	23	21	23	32	1.98
398059--398103	22	2.0	22	86	4	63	31	33	26	8	1.87
399506--399929	103	4.1	103	97	0	803	26	12	23	36	1.91
399946--400003	23	2.5	23	88	0	80	18	27	29	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399936--400013	23	3.3	23	76	1	66	23	20	23	33	1.97
402334--402368	2	17.5	2	100	0	70	51	0	0	48	1.00
403305--403350	22	2.0	22	83	8	56	30	32	26	10	1.90
404753--405176	103	4.1	103	97	0	794	27	12	22	37	1.91
405193--405249	23	2.5	23	82	0	69	21	28	26	24	1.99
408067--408136	12	5.8	12	75	6	61	51	18	15	14	1.77
408067--408136	24	2.9	24	82	0	86	51	18	15	14	1.77
408069--408173	24	4.4	25	70	15	78	48	16	18	17	1.81
412649--412715	2	33.5	2	100	0	134	50	0	0	49	1.00
412882--412981	12	8.8	12	68	18	52	55	19	11	15	1.69
412876--412946	31	2.3	31	92	0	124	56	15	11	16	1.67
412918--413005	24	3.7	24	73	8	72	47	19	13	19	1.82
431528--431568	15	2.7	16	81	11	59	63	0	0	36	0.95
431998--432027	15	2.0	15	93	0	51	63	0	0	36	0.95
432610--432650	11	3.2	13	77	19	50	65	0	4	29	1.13
433236--433303	29	2.3	29	100	0	136	23	33	20	22	1.97
435177--435634	106	4.3	106	92	0	736	23	18	24	33	1.97
435177--436586	212	6.8	212	89	5	2027	23	18	24	33	1.96
435568--435817	43	5.4	43	66	17	153	22	18	24	34	1.96
435543--436552	106	10.0	96	90	5	1143	22	17	25	34	1.96
435814--436586	106	7.3	106	93	1	1205	23	17	25	34	1.96
435177--436586	318	4.5	317	87	7	2023	23	18	24	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
440421--440461	11	3.2	13	77	19	50	65	0	4	29	1.13
441047--441114	29	2.3	29	100	0	136	23	33	20	22	1.97
445612--445723	37	3.0	37	88	0	170	41	14	13	31	1.84
446274--446309	2	18.0	2	100	0	72	50	0	0	50	1.00
446297--446387	38	2.3	38	79	9	103	30	2	3	63	1.22
446366--446453	4	21.8	4	77	13	56	29	1	0	69	0.96
446349--446467	54	2.2	52	82	10	132	24	3	0	71	1.07
446366--446498	13	10.5	13	71	18	59	24	3	0	72	1.04
446250--446453	8	25.9	8	69	17	52	31	1	1	64	1.16
449521--449596	14	5.4	14	71	16	59	78	5	14	1	0.98
450666--450737	32	2.2	32	83	9	85	33	12	19	34	1.89
451372--451740	106	3.5	106	87	1	517	35	25	17	22	1.95
452019--452264	100	2.4	101	91	6	390	28	18	13	39	1.88
452077--452162	35	2.4	35	92	1	136	26	23	12	37	1.91
452112--452364	65	3.8	65	75	14	271	26	18	13	40	1.88
452177--452297	36	3.4	36	85	5	165	21	21	14	42	1.89
452075--452400	138	2.4	135	89	5	519	26	19	13	39	1.89
452313--452553	36	6.9	36	75	13	182	24	19	14	41	1.89
452222--452502	100	2.8	101	91	3	449	27	18	13	40	1.89
452019--452760	238	3.1	238	92	4	1142	26	19	13	40	1.88
452489--452818	21	16.4	21	70	20	233	26	20	12	41	1.88
452415--452553	36	3.9	36	84	4	183	21	20	14	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452658--452765	37	3.0	36	80	9	130	25	20	12	41	1.87
452449--452904	207	2.3	196	83	9	587	25	19	13	41	1.88
452710--452818	57	1.9	58	96	1	202	22	20	13	43	1.87
452662--452837	94	1.9	92	87	2	253	25	19	13	40	1.89
452356--452820	243	1.9	237	86	8	656	26	19	13	41	1.88
452756--452837	37	2.2	36	93	2	137	26	19	14	39	1.90
452906--452965	29	2.1	29	93	0	102	43	11	10	35	1.75
453094--453262	85	2.0	85	80	5	191	35	20	17	26	1.95
453731--453842	37	3.0	37	93	0	197	40	14	13	32	1.84
454394--454512	46	2.6	44	83	13	161	35	1	2	60	1.20
454438--454527	40	2.3	39	85	14	123	33	2	1	63	1.14
454373--454521	48	3.1	47	80	10	167	32	2	2	61	1.24
454498--454567	24	2.9	23	78	16	72	20	4	1	74	1.07
454527--454597	29	2.5	28	80	13	81	15	5	1	77	1.02
464107--464158	21	2.5	21	81	3	61	38	19	25	17	1.93
464186--464233	20	2.4	20	89	0	69	22	29	22	25	1.99
464757--464823	19	3.5	19	83	2	80	49	25	14	10	1.76
464819--464970	19	8.1	19	80	11	170	11	21	20	46	1.83
464819--464970	39	4.1	38	79	12	170	11	21	20	46	1.83
464881--464945	34	1.9	34	90	3	105	10	24	23	41	1.86
464913--464970	20	2.9	19	80	7	53	13	22	18	44	1.85
466972--467094	42	2.9	42	80	2	122	22	36	17	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467028--467094	21	3.2	21	66	6	55	23	35	20	19	1.95
468453--468487	14	2.6	14	90	4	54	28	0	25	45	1.54
468440--468488	14	3.7	14	76	10	50	26	0	22	51	1.49
468672--468763	19	5.4	19	65	24	69	13	23	17	45	1.83
468670--468763	33	2.8	33	96	0	170	12	24	18	44	1.84
471054--471078	12	2.1	12	100	0	50	0	28	0	72	0.86
471253--471306	24	2.2	24	90	0	81	38	20	16	24	1.92
472366--472461	20	4.8	20	97	0	165	36	22	23	16	1.94
472595--472631	14	2.6	14	86	0	56	48	21	0	29	1.50
474478--474522	20	2.4	18	85	7	54	44	26	15	13	1.83
474494--474542	14	3.1	16	72	21	57	48	24	18	8	1.75
474571--474628	14	3.9	14	77	16	62	10	17	25	46	1.79
474554--474644	32	2.8	33	91	3	148	13	18	21	46	1.83
474629--474672	20	2.2	20	88	4	63	20	22	20	36	1.95
475165--475209	18	2.5	18	85	0	63	13	15	42	28	1.85
476529--476566	20	1.9	20	88	0	58	50	21	15	13	1.78
476830--476873	22	2.0	22	95	0	79	18	15	45	20	1.85
477041--477136	20	4.6	22	71	12	69	22	16	21	38	1.93
477041--477138	41	2.4	41	84	0	133	22	16	21	39	1.92
477124--477216	20	4.5	21	78	4	100	17	24	17	40	1.90
477104--477216	41	2.8	41	89	5	140	18	23	18	38	1.93
480812--480867	27	2.1	27	93	0	94	35	19	10	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481813--481986	32	5.3	32	78	10	122	44	4	6	44	1.48
481858--482212	2	182.5	2	64	21	69	45	5	5	42	1.52
481813--481968	65	2.4	64	79	14	155	44	3	6	45	1.47
481896--482027	59	2.2	61	83	5	171	43	4	5	46	1.46
481917--482006	40	2.3	40	83	7	114	44	5	4	45	1.47
482872--482913	2	21.0	2	100	0	84	50	0	0	50	1.00
482980--483025	24	1.9	24	83	16	60	43	0	4	52	1.21
483125--483168	13	3.3	12	82	17	52	50	0	6	43	1.29
483193--483337	78	1.9	78	95	0	263	40	7	6	45	1.58
483197--483321	37	3.3	37	67	21	96	42	8	6	43	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11