Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007961.1 Hibiscus syriacus cultivar Beakdansim tig00110388_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2700559

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1371 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2617004--2617051
25
1.9
25
86
0
69
47
16
8
27
1.75
2620442--2620476
17
2.0
18
88
5
54
77
2
2
17
1.02
2621693--2621928
39
6.4
38
69
16
142
44
3
3
48
1.36
2621814--2621852
2
19.5
2
100
0
78
48
0
0
51
1.00
2621947--2622005
26
2.3
26
88
8
86
45
6
1
45
1.40
2621970--2622077
37
3.0
37
84
9
134
45
8
3
42
1.52
2621977--2622108
36
3.6
35
81
7
113
46
9
3
41
1.51
2622095--2622119
2
12.5
2
100
0
50
52
0
0
48
1.00
2622673--2623073
82
4.8
84
84
7
489
24
19
21
33
1.97
2624019--2624055
2
19.0
2
84
15
51
48
2
0
48
1.15
2631885--2631931
24
1.9
25
86
4
69
25
12
14
46
1.80
2632097--2632169
23
3.2
23
75
7
67
39
23
16
20
1.92
2635070--2635132
27
2.4
26
89
2
99
25
20
7
46
1.78
2636376--2636428
22
2.4
22
100
0
106
16
18
28
35
1.93
2636879--2636959
40
2.1
39
83
4
101
33
19
19
27
1.96
2637173--2637266
22
4.4
22
77
8
104
37
22
18
22
1.94
2637410--2637454
19
2.4
19
88
0
63
24
13
6
55
1.62
2638515--2638551
18
2.1
18
90
10
58
27
0
8
64
1.21
2639242--2639272
2
16.0
2
93
6
55
48
0
0
51
1.00
2643268--2643365
3
32.7
3
89
0
151
63
0
2
34
1.06
2643653--2644633
113
8.7
113
97
0
1685
29
19
12
38
1.89
2645394--2645872
83
5.8
83
91
3
725
36
22
12
28
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2645394--2645864
248
1.9
247
90
3
750
36
22
12
28
1.91
2647011--2647052
14
3.2
12
84
15
57
2
9
0
88
0.61
2647007--2647055
10
4.6
10
80
16
55
2
12
0
85
0.68
2647011--2647052
13
3.2
13
90
6
66
2
9
0
88
0.61
2659154--2659208
27
2.0
28
89
3
85
3
20
7
69
1.28
2659664--2659754
3
31.7
3
80
8
109
61
0
3
35
1.12
2662781--2662889
55
1.9
56
96
3
202
44
10
15
30
1.79
2668881--2669043
4
40.8
4
97
0
308
0
25
24
49
1.54
2669061--2669354
8
35.8
8
80
5
237
14
46
10
27
1.77
2669061--2669354
12
24.8
12
82
2
245
14
46
10
27
1.77
2672693--2672747
22
2.5
22
96
0
101
16
20
16
47
1.83
2673234--2673293
6
9.1
7
92
7
60
33
1
0
65
1.03
2673245--2673287
6
7.2
6
100
0
86
32
0
0
67
0.91
2685031--2685072
17
2.4
18
84
11
61
66
4
9
19
1.38
2685086--2685111
13
2.0
13
100
0
52
76
0
7
15
0.99
2685102--2685173
32
2.2
34
82
9
87
66
0
12
20
1.24
2685259--2685325
2
34.5
2
80
16
79
53
1
1
43
1.19
2693726--2693949
43
5.2
42
79
5
216
27
19
18
33
1.96
2699687--2699779
21
4.6
20
78
4
96
38
18
24
18
1.92
2699684--2699779
41
2.3
41
98
0
183
39
17
23
18
1.92
2699687--2699779
20
4.6
20
78
4
96
38
18
24
18
1.92
2699768--2699861
20
4.7
20
77
2
80
35
24
17
23
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2699765--2699842
41
1.9
41
83
0
102
41
21
15
21
1.90
2700300--2700365
20
3.4
19
81
6
69
45
25
18
10
1.81
2700361--2700432
20
3.7
19
92
5
117
11
20
22
45
1.82
2700366--2700443
39
2.0
40
87
7
115
8
20
25
44
1.80
2700415--2700498
33
2.5
33
84
9
116
11
25
26
36
1.90
2700405--2700525
33
3.5
33
81
10
102
12
23
23
40
1.88
2700467--2700516
18
2.6
19
78
9
57
14
26
22
38
1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!