genome.fa.s7961.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007961.1 Hibiscus syriacus cultivar Beakdansim tig00110388_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2700559

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  7  of  12  ( 1371 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1304813--1304855	20	2.2	20	95	0	77	13	11	11	62	1.54
1304872--1305035	86	1.9	86	97	0	310	27	14	14	43	1.85
1305011--1305052	21	2.0	21	95	0	75	11	9	11	66	1.44
1305011--1305061	20	2.5	21	87	3	77	11	9	13	64	1.49
1305400--1305468	24	2.9	25	79	18	76	52	2	1	43	1.25
1305770--1305829	23	2.6	23	71	10	59	40	11	1	46	1.50
1305608--1305842	87	2.7	87	83	3	294	35	12	8	44	1.72
1313752--1313818	27	2.4	28	82	9	84	43	26	10	19	1.83
1315421--1315459	20	1.9	21	84	5	53	25	15	2	56	1.52
1316683--1316729	19	2.5	19	90	10	71	27	23	19	29	1.98
1319256--1319328	24	3.1	24	82	2	94	23	21	26	28	1.99
1319261--1319349	24	3.8	25	77	12	91	22	20	26	30	1.98
1319256--1319349	47	2.0	47	85	10	129	22	21	26	29	1.99
1320037--1320135	32	3.1	32	88	0	135	17	31	26	25	1.97
1321092--1321135	23	1.9	23	95	0	79	43	15	6	34	1.74
1323001--1323067	34	1.9	34	82	14	84	47	19	11	20	1.81
1331959--1331996	2	20.0	2	89	10	62	50	0	0	50	1.00
1335676--1335737	30	2.1	30	87	0	88	25	33	22	17	1.96
1339926--1339962	16	2.4	15	90	4	56	32	2	0	64	1.07
1343201--1343275	38	1.9	39	86	2	107	32	2	6	58	1.38
1343894--1343929	16	2.2	16	90	9	56	38	0	11	50	1.38
1344087--1344120	15	2.2	16	85	15	54	52	5	0	41	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1344208--1344265	7	8.3	7	72	0	53	48	29	0	22	1.51
1344122--1344218	48	2.0	49	83	2	124	50	8	7	34	1.60
1344208--1344253	21	2.2	21	92	0	74	47	30	0	21	1.51
1344208--1344260	21	2.5	21	87	0	61	49	28	0	22	1.50
1344810--1344843	17	2.1	16	88	5	50	76	0	8	14	1.01
1345318--1345366	23	2.1	23	85	7	64	57	12	2	28	1.46
1348659--1348702	20	2.2	20	84	4	63	65	0	15	18	1.27
1355005--1355038	17	2.1	16	88	5	50	76	0	8	14	1.01
1355512--1355562	24	2.1	24	85	7	68	58	11	1	27	1.44
1356519--1356564	2	22.0	2	86	8	65	50	2	2	45	1.26
1356638--1356688	21	2.4	21	83	0	66	52	25	1	19	1.56
1356850--1356908	22	2.5	24	81	13	77	49	5	1	44	1.34
1356953--1357199	20	11.4	20	67	23	103	43	4	5	46	1.44
1357040--1357204	2	84.0	2	69	16	96	46	2	3	47	1.33
1357051--1357204	9	17.4	9	69	17	67	46	2	3	47	1.32
1357044--1357097	27	2.0	28	92	3	92	46	1	5	46	1.37
1357271--1357970	209	3.3	209	93	1	1177	28	11	8	51	1.68
1358586--1358646	31	2.0	31	86	0	86	27	4	22	44	1.74
1368509--1368582	36	2.1	36	97	0	139	51	4	14	29	1.61
1369426--1369452	8	3.4	8	100	0	54	62	11	0	25	1.28
1370044--1370119	22	3.5	22	71	16	77	36	19	10	32	1.86
1381374--1381441	2	33.5	2	97	2	127	50	0	1	48	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1381453--1381551	50	1.9	51	93	4	173	38	6	13	42	1.68
1383249--1383307	31	1.9	31	92	0	100	40	6	10	42	1.65
1383330--1383372	21	2.1	21	91	4	70	51	11	0	37	1.39
1383356--1383551	18	12.1	18	62	24	71	54	12	0	32	1.42
1383336--1384052	80	8.8	80	79	12	719	53	13	0	33	1.41
1383454--1383539	14	5.6	14	67	20	55	55	8	0	36	1.29
1383432--1383984	32	19.8	32	70	24	328	53	13	0	33	1.42
1383533--1383605	22	3.3	22	69	16	53	54	16	0	28	1.42
1383609--1383657	22	2.2	22	88	3	71	55	14	0	30	1.40
1383661--1383703	22	2.0	22	100	0	86	51	13	0	34	1.42
1383559--1384052	54	9.1	54	73	18	368	53	13	0	33	1.40
1383663--1383711	22	2.2	22	88	3	71	55	14	0	30	1.40
1383820--1383872	22	2.5	21	70	11	54	52	16	0	30	1.44
1383866--1383918	14	3.5	14	72	18	52	56	5	0	37	1.23
1383907--1383949	22	2.0	22	90	0	68	53	13	0	32	1.41
1383666--1384052	166	2.4	160	92	3	641	53	13	0	33	1.40
1383992--1384087	22	4.2	22	68	7	75	52	9	0	38	1.34
1384032--1384134	15	6.5	15	78	15	109	51	2	0	45	1.16
1383992--1384134	67	2.1	67	87	5	198	51	6	0	42	1.27
1385868--1385915	21	2.3	21	92	3	80	20	2	4	72	1.11
1385868--1385915	10	4.7	10	79	5	60	20	2	4	72	1.11
1386975--1387004	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1387174--1387200	13	2.1	13	100	0	54	22	25	14	37	1.93
1388317--1388357	2	21.0	2	95	5	75	48	0	0	51	1.00
1386894--1388914	665	3.0	676	93	3	3437	43	12	14	29	1.82
1389004--1389034	6	5.2	6	100	0	62	19	48	0	32	1.49
1393189--1393235	22	2.2	22	84	3	60	57	10	2	29	1.44
1399151--1399192	18	2.3	19	80	16	52	45	2	2	50	1.27
1403711--1403740	15	2.0	15	100	0	60	13	20	26	40	1.89
1408960--1408988	12	2.4	12	100	0	58	27	37	34	0	1.57
1409039--1409120	42	1.9	42	85	2	110	40	15	18	25	1.90
1409031--1409331	43	7.2	42	74	4	214	34	17	20	27	1.95
1412996--1413331	41	8.1	41	75	5	257	36	16	18	28	1.92
1413011--1413168	84	1.9	81	90	3	253	39	18	17	24	1.92
1413021--1413248	84	2.8	82	81	7	239	39	18	16	25	1.92
1415152--1415225	37	2.0	37	100	0	148	37	21	10	29	1.88
1418397--1418435	13	3.0	13	80	0	51	25	17	20	35	1.95
1418407--1418574	85	2.0	85	82	4	205	31	20	17	30	1.95
1418592--1418620	2	14.5	2	100	0	58	48	0	0	51	1.00
1420944--1421003	20	2.9	21	87	7	86	30	25	26	18	1.98
1422377--1422589	103	2.1	103	94	0	372	26	14	23	36	1.93
1422605--1422696	23	4.0	23	86	0	130	19	26	26	28	1.99
1427557--1427586	15	2.0	15	93	0	51	26	26	3	43	1.70
1428143--1428197	26	2.1	26	93	6	94	34	18	20	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1434545--1434574	15	2.0	15	93	0	51	26	26	3	43	1.70
1435134--1435188	26	2.1	26	93	6	94	34	18	20	27	1.95
1444619--1444670	26	2.0	26	92	7	88	26	19	19	34	1.95
1445124--1445150	14	1.9	14	100	0	54	40	7	22	29	1.81
1445221--1445250	15	2.0	15	93	0	51	43	3	26	26	1.70
1447783--1448101	41	7.8	41	77	4	295	34	17	19	27	1.95
1447797--1448101	83	3.7	83	78	3	294	35	18	19	26	1.94
1449119--1449182	23	2.8	23	90	0	101	26	26	28	18	1.98
1449198--1449415	103	2.1	103	92	0	355	37	22	13	27	1.91
1459224--1459276	26	2.0	26	92	0	88	26	20	18	33	1.96
1459821--1459850	15	2.0	15	93	0	51	43	3	26	26	1.70
1464676--1464767	23	4.0	22	81	5	94	30	25	23	20	1.99
1464783--1464995	103	2.1	103	94	0	372	36	23	13	27	1.92
1466367--1466426	20	2.9	21	90	7	95	18	25	25	31	1.97
1468788--1468955	85	2.0	85	82	6	207	30	18	20	30	1.96
1468927--1468965	13	3.0	13	80	0	51	35	20	17	25	1.95
1480300--1480369	35	2.0	35	97	0	131	34	12	17	35	1.88
1484435--1484493	22	3.0	21	76	13	54	30	1	3	64	1.20
1496268--1496333	21	3.1	21	80	0	78	27	12	27	33	1.92
1505080--1505155	23	3.3	23	83	7	84	19	27	2	50	1.61
1510605--1510633	14	2.1	14	100	0	58	27	0	27	44	1.54
1512803--1512865	21	3.0	21	90	0	90	22	14	30	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1513884--1513908	2	12.5	2	100	0	50	48	0	0	52	1.00
1514287--1514346	22	2.8	22	78	14	54	55	0	1	43	1.10
1548201--1548248	20	2.4	20	89	0	69	50	2	4	43	1.33
1550223--1550266	23	1.9	23	95	0	79	20	31	25	22	1.98
1550225--1550274	23	2.2	23	85	0	64	24	32	20	24	1.98
1556351--1556468	62	1.9	63	82	1	148	36	21	18	23	1.95
1557066--1557131	23	2.9	23	88	0	87	22	28	22	25	1.99
1557906--1557958	20	2.7	19	85	5	61	47	0	3	49	1.19
1557909--1557958	19	2.8	18	82	8	57	48	0	4	48	1.20
1562520--1562992	235	2.0	237	97	2	900	30	14	17	36	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12