genome.fa.s7961.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007961.1 Hibiscus syriacus cultivar Beakdansim tig00110388_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2700559

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  4  of  12  ( 1371 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582423--582482	29	2.0	31	87	6	88	41	15	6	36	1.73
583982--584112	19	7.7	19	66	23	94	44	18	21	16	1.87
583982--584108	33	3.8	33	81	6	168	44	18	21	16	1.87
583985--584115	66	2.0	66	92	3	219	43	17	21	17	1.88
584108--584197	33	2.7	33	92	0	144	13	23	20	43	1.86
584139--584197	19	3.4	19	71	22	65	11	22	20	45	1.83
584304--584340	14	2.6	14	91	0	65	45	24	0	29	1.53
585638--585842	42	4.9	41	72	9	153	23	18	35	22	1.95
585638--585704	21	3.2	21	70	8	64	20	20	34	23	1.97
585737--585842	21	5.0	21	65	4	61	24	16	36	21	1.94
585668--585842	84	2.1	84	96	0	323	24	17	36	21	1.94
586062--586246	91	2.0	90	87	8	266	47	16	12	23	1.81
588371--588424	20	2.7	20	97	0	99	25	18	24	31	1.97
588413--588464	21	2.5	21	84	3	70	19	25	19	36	1.95
593634--593668	18	1.9	18	88	0	52	31	8	17	42	1.79
594066--594098	16	2.1	16	94	0	57	21	18	33	27	1.96
604282--604400	48	2.5	48	84	8	156	30	48	7	13	1.70
604378--604432	26	2.1	26	86	0	74	27	50	14	7	1.69
604404--604614	48	4.5	48	86	4	154	27	48	9	15	1.74
604463--604771	45	6.8	45	90	5	446	26	48	6	19	1.72
605412--605481	29	2.4	29	92	2	115	38	10	12	38	1.77
610692--610760	6	11.5	6	100	0	138	33	50	15	0	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
611291--611552	42	6.2	39	83	9	188	37	22	19	20	1.95
611312--611455	63	2.3	63	95	2	256	34	24	20	20	1.96
611340--611552	84	2.5	85	80	9	270	37	22	19	20	1.94
611291--611552	105	2.5	103	88	3	389	37	22	19	20	1.95
616215--616260	19	2.4	19	100	0	92	36	4	19	39	1.72
620911--620948	20	1.9	20	84	10	51	21	23	10	44	1.83
628960--629050	29	3.1	29	91	0	146	32	2	19	45	1.63
631560--631617	20	2.6	22	89	10	84	25	22	20	31	1.98
631606--631656	19	2.7	19	96	0	93	29	35	13	21	1.92
631624--631764	64	2.2	64	81	6	153	26	25	17	30	1.97
633352--633376	9	2.8	9	100	0	50	40	0	0	60	0.97
633362--633394	16	2.0	17	88	5	50	33	0	0	66	0.92
636660--636705	2	23.0	2	100	0	92	50	0	0	50	1.00
638800--638825	13	2.0	13	100	0	52	23	23	30	23	1.99
645408--645436	14	2.1	14	100	0	58	27	0	13	58	1.36
646277--646334	3	19.0	3	79	10	64	37	1	0	60	1.07
646271--646352	34	2.5	33	84	9	96	41	1	0	57	1.06
646369--646408	21	1.9	21	85	10	55	27	20	27	25	1.99
647738--647813	11	6.5	11	70	20	50	28	3	3	63	1.30
653422--653476	11	5.0	11	78	8	67	85	0	14	0	0.60
653414--653473	9	6.3	9	81	14	68	83	0	16	0	0.65
653422--653475	20	2.7	21	85	8	85	85	0	14	0	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
655712--655937	114	2.0	114	91	0	371	32	15	21	30	1.95
658132--658337	54	3.9	54	80	10	228	38	15	21	24	1.92
658704--658758	22	2.5	22	90	0	92	34	12	14	38	1.84
659434--660001	76	7.5	76	97	0	1037	22	20	21	35	1.96
660211--660250	21	1.9	21	85	10	55	27	20	27	25	1.99
661581--661656	11	6.5	11	70	20	50	28	3	3	63	1.30
665053--665086	12	2.8	12	86	0	50	38	29	20	11	1.88
670363--670412	21	2.4	21	96	0	91	42	18	0	40	1.50
676421--676505	31	2.7	31	76	8	82	12	27	31	28	1.93
694965--695006	15	3.0	14	86	6	59	38	0	0	61	0.96
695432--695589	21	7.8	20	72	7	86	38	25	17	18	1.92
695556--695865	40	7.8	40	91	0	361	37	24	17	20	1.94
695556--695865	20	15.5	20	80	6	288	37	24	17	20	1.94
695556--695865	60	5.2	60	81	3	320	37	24	17	20	1.94
696545--696591	24	2.0	24	87	8	69	25	14	21	38	1.92
699023--699250	19	12.7	19	81	15	288	45	17	21	15	1.85
699023--699250	58	4.2	53	85	11	272	45	17	21	15	1.85
699172--699226	14	3.6	14	73	21	56	45	20	23	10	1.82
699051--699244	33	5.3	36	93	4	247	46	16	22	14	1.83
699259--699356	19	5.4	19	84	13	143	14	22	17	45	1.84
699240--699356	53	2.2	53	96	1	218	13	24	17	43	1.86
699462--699498	14	2.6	14	91	0	65	45	21	0	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
701406--701470	18	3.4	19	87	4	78	44	27	16	10	1.81
701461--701517	14	3.7	14	77	20	60	45	22	21	10	1.82
701443--701534	33	2.8	33	93	1	159	46	21	20	10	1.81
701406--701539	19	7.6	19	75	18	119	45	23	19	11	1.82
701535--701662	19	7.3	19	73	19	116	8	17	28	45	1.78
701535--701625	32	2.8	34	90	6	143	7	18	28	45	1.77
701710--702079	91	4.1	93	96	3	682	45	19	12	22	1.83
703773--703862	14	5.7	14	69	23	63	44	22	23	10	1.82
703765--703879	33	3.5	33	97	0	221	46	20	22	10	1.80
703787--703884	19	5.7	19	69	22	90	44	21	22	11	1.83
703896--703952	14	3.7	14	75	20	60	8	24	22	43	1.81
703880--703960	33	2.5	33	95	0	144	8	22	22	46	1.78
703937--704012	21	3.7	21	83	3	109	11	25	17	46	1.82
703936--704013	41	1.9	41	97	0	147	12	25	16	44	1.83
704092--704162	33	2.2	33	92	0	115	47	18	22	11	1.80
704341--704394	21	2.5	22	78	3	65	20	16	38	24	1.92
704541--704694	20	7.7	20	81	7	168	18	18	26	37	1.93
704540--704694	40	3.8	40	82	4	186	18	18	26	37	1.93
704681--704763	21	4.0	21	73	6	78	25	16	24	33	1.96
704661--704759	42	2.4	43	77	11	100	21	18	23	37	1.94
705416--705458	22	2.0	22	90	0	68	30	6	37	25	1.82
709584--709632	18	2.7	19	84	6	57	32	0	10	57	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
711452--711486	2	17.0	2	88	5	52	48	0	5	45	1.26
712825--712954	67	1.9	67	84	3	172	25	23	13	37	1.91
714371--714444	23	3.2	23	96	0	130	28	27	25	18	1.98
716218--716257	20	2.0	21	85	14	57	42	5	7	45	1.54
716488--716526	19	2.1	19	95	0	69	20	38	15	25	1.92
716476--716634	65	2.5	65	85	3	205	30	27	15	27	1.96
722415--722470	22	2.7	21	83	10	62	30	23	17	28	1.97
723183--723242	21	2.9	21	77	5	68	23	36	6	33	1.81
724042--724085	21	2.1	21	91	0	70	6	36	15	40	1.74
724881--724920	20	2.0	21	85	14	57	42	5	7	45	1.54
725139--725189	19	2.7	19	88	8	70	25	33	13	27	1.94
725137--725299	65	2.5	65	85	3	222	30	26	15	27	1.96
728345--728413	31	2.2	31	97	0	129	24	17	20	37	1.93
728345--728436	31	3.0	31	88	3	96	23	17	21	36	1.94
730147--730201	25	2.2	24	75	9	56	70	3	9	16	1.27
731695--731737	20	2.2	20	86	0	59	37	18	11	32	1.87
732463--732487	13	1.9	13	100	0	50	60	16	16	8	1.58
740247--740287	20	2.0	20	90	0	64	36	21	9	31	1.86
741017--741041	13	1.9	13	100	0	50	60	16	16	8	1.58
748767--748809	20	2.2	20	91	0	68	34	20	11	32	1.89
749389--749440	21	2.3	24	75	18	58	26	19	26	26	1.99
749687--750211	139	3.8	138	81	2	557	34	26	14	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
749703--750229	278	1.9	278	81	1	635	34	25	14	25	1.94
752357--752416	31	1.9	31	83	6	77	25	8	6	60	1.50
752461--752523	29	2.2	29	86	11	85	20	11	6	61	1.50
756886--756924	16	2.8	13	79	20	51	30	10	12	46	1.75
756893--756941	16	2.9	17	93	6	91	30	10	12	46	1.74
759442--759527	29	2.9	29	73	14	77	43	5	5	45	1.52
759595--759670	29	2.6	29	93	6	127	48	3	9	38	1.54
763675--763708	5	6.8	5	87	12	52	79	0	2	17	0.86
764136--764174	21	1.9	20	84	5	51	46	2	0	51	1.14
775700--775758	24	2.5	24	86	5	66	35	11	15	37	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12