genome.fa.s7961.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007961.1 Hibiscus syriacus cultivar Beakdansim tig00110388_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2700559

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  6  of  12  ( 1371 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1011021--1011062	19	2.2	19	91	0	66	16	16	23	42	1.88
1011030--1011096	19	3.8	19	73	18	72	11	20	20	46	1.82
1011194--1011230	14	2.6	14	91	0	65	45	24	0	29	1.53
1012584--1012650	21	3.2	21	68	4	55	19	20	35	23	1.95
1012623--1012702	42	1.9	42	84	0	106	22	17	38	21	1.93
1014704--1014825	20	6.8	19	67	20	75	43	19	23	13	1.86
1014729--1014827	33	3.0	33	89	1	153	40	21	25	13	1.89
1014826--1014870	19	2.3	20	85	11	67	6	17	24	51	1.70
1015421--1015473	20	2.7	20	93	0	88	26	20	28	24	1.99
1015482--1015535	20	2.7	20	91	0	90	25	18	22	33	1.97
1015422--1015538	61	1.9	61	83	0	153	23	17	23	34	1.96
1015606--1015646	21	2.0	21	85	0	55	34	31	17	17	1.93
1016597--1016639	2	22.0	2	95	4	79	48	0	0	51	1.00
1025082--1025112	15	2.1	15	94	5	55	48	0	0	51	1.00
1025083--1025131	15	3.6	14	79	15	50	48	0	2	48	1.12
1032102--1032152	25	2.0	25	100	0	102	29	19	19	31	1.97
1040441--1040466	13	2.0	13	100	0	52	23	30	7	38	1.83
1048722--1049728	348	2.9	350	97	1	1887	35	22	14	27	1.93
1053669--1053785	59	2.0	60	83	5	148	35	6	24	32	1.82
1057913--1057969	28	2.0	28	89	0	87	36	19	10	33	1.86
1063471--1063511	21	2.0	21	90	4	66	43	2	0	53	1.13
1070898--1070958	19	3.2	19	75	24	65	62	1	3	32	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1070901--1070958	21	3.0	20	75	24	61	62	1	3	32	1.22
1072332--1072392	24	2.6	24	79	7	72	31	11	4	52	1.58
1081928--1082083	64	2.4	64	82	9	165	35	19	17	26	1.95
1082308--1082365	25	2.3	25	79	8	64	36	12	10	41	1.76
1082661--1082729	23	3.0	23	84	0	93	20	27	24	27	1.99
1088852--1089007	64	2.4	65	85	7	192	35	20	17	26	1.95
1089588--1089655	23	3.0	23	88	0	91	20	27	25	26	1.99
1096391--1096442	20	2.6	20	96	0	95	38	26	13	21	1.90
1096432--1096530	21	4.8	20	72	6	72	36	23	19	21	1.95
1096497--1096690	20	9.6	20	81	5	221	35	25	19	19	1.95
1096497--1096690	60	3.2	60	83	0	253	35	25	19	19	1.95
1097072--1097142	33	2.2	33	92	0	115	11	22	18	47	1.80
1097263--1097317	14	3.6	14	73	21	56	40	23	27	9	1.85
1097263--1097333	33	2.2	33	92	0	115	42	25	23	8	1.82
1097329--1097426	19	5.7	19	70	22	81	10	24	22	42	1.84
1097351--1097440	14	5.7	14	74	23	81	8	25	23	42	1.83
1097334--1097448	33	3.5	33	95	0	212	9	24	20	45	1.81
1099147--1099618	185	2.6	185	99	0	928	22	12	19	46	1.83
1099147--1099618	93	5.1	93	98	1	930	22	12	19	46	1.83
1099662--1099790	19	7.3	19	75	17	125	45	28	17	8	1.77
1099698--1099790	33	2.8	32	91	4	150	46	27	18	7	1.76
1099662--1099790	52	2.5	52	74	14	140	45	28	17	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1099786--1099920	19	7.6	19	75	16	128	11	19	23	45	1.82
1099808--1099864	14	3.7	14	77	20	60	10	21	22	45	1.82
1099791--1099883	33	2.8	33	95	0	168	10	20	21	47	1.80
1101827--1101862	14	2.6	14	95	0	63	33	0	22	44	1.53
1101969--1102070	19	5.6	19	84	13	151	44	17	23	14	1.86
1102099--1102404	19	17.4	19	79	16	340	14	19	18	47	1.83
1102067--1102404	142	2.4	135	87	7	475	15	19	18	47	1.83
1102099--1102376	52	5.2	52	88	7	336	14	20	17	47	1.82
1104710--1104734	12	2.1	12	100	0	50	0	28	0	72	0.86
1104909--1104955	24	2.0	24	87	8	69	38	21	14	25	1.92
1105628--1105996	20	18.5	20	85	4	449	20	18	26	34	1.95
1106769--1106802	10	3.4	10	87	0	50	58	14	11	14	1.63
1107072--1107127	24	2.2	26	87	9	89	51	16	12	19	1.75
1107073--1107128	14	4.1	14	73	21	57	51	16	14	17	1.76
1126474--1126516	14	2.8	16	79	17	54	69	2	0	27	1.00
1132957--1133002	25	1.9	23	82	8	56	43	4	4	47	1.42
1154620--1154691	37	1.9	37	97	0	135	19	29	15	36	1.92
1159890--1159931	22	2.0	21	86	13	59	64	7	0	28	1.20
1165528--1165568	16	2.6	16	96	0	73	31	12	24	31	1.92
1166665--1166709	21	2.1	22	84	12	58	53	6	15	24	1.66
1174599--1174626	8	3.5	8	100	0	56	10	10	0	78	0.96
1175266--1175305	19	2.0	20	86	13	57	67	0	5	27	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1178040--1178093	20	2.7	19	75	8	63	33	31	18	16	1.93
1178101--1178155	21	2.6	21	77	8	58	34	21	18	25	1.96
1178143--1178373	80	2.9	80	81	5	236	37	22	18	21	1.94
1178143--1178373	40	5.8	39	80	9	198	37	22	18	21	1.94
1178143--1178373	60	3.8	59	78	7	198	37	22	18	21	1.94
1178161--1178379	20	10.9	19	74	12	131	36	22	18	22	1.95
1179233--1179286	24	2.2	24	93	0	90	20	18	20	40	1.91
1181701--1181754	20	2.7	20	91	0	81	33	24	20	22	1.97
1181738--1181822	33	2.5	33	92	1	134	43	18	23	14	1.87
1181873--1181926	19	2.8	19	97	0	99	16	20	12	50	1.78
1181838--1181926	38	2.5	35	83	10	101	16	20	15	47	1.83
1182039--1182075	14	2.6	14	86	0	56	48	21	0	29	1.50
1183387--1183453	21	3.2	21	68	4	55	19	20	35	23	1.95
1183387--1183509	42	2.9	41	79	7	113	22	18	36	21	1.95
1185476--1185576	20	5.2	20	84	7	109	45	18	21	13	1.84
1185474--1185605	19	7.1	19	77	11	121	45	19	21	12	1.84
1185632--1185703	20	3.6	19	81	5	81	13	16	19	50	1.79
1186262--1186417	20	7.7	21	74	10	65	21	17	21	39	1.93
1186266--1186538	40	6.8	40	78	4	235	20	17	22	39	1.92
1186266--1186477	41	5.2	41	83	1	248	21	16	22	39	1.92
1186486--1186538	20	2.7	20	91	5	81	13	18	24	43	1.86
1186532--1186580	21	2.3	20	80	10	53	28	16	20	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1186573--1186617	20	2.2	20	84	7	56	17	15	33	33	1.92
1204442--1204497	29	1.9	29	92	0	94	41	17	16	25	1.89
1207072--1207124	26	2.0	26	88	0	79	45	7	16	30	1.75
1208444--1208520	36	2.1	37	92	2	129	28	20	15	35	1.94
1210261--1210419	64	2.5	64	86	4	205	30	13	23	32	1.94
1217110--1217149	21	1.9	21	85	10	55	25	37	25	12	1.91
1229272--1229305	16	2.1	16	94	0	59	32	8	26	32	1.87
1237502--1237537	17	2.1	17	100	0	72	61	11	0	27	1.30
1244637--1244682	2	23.0	2	100	0	92	50	0	0	50	1.00
1253311--1253417	33	3.2	33	67	7	83	57	5	4	32	1.43
1254691--1254724	7	4.9	7	100	0	68	14	70	0	14	1.17
1254745--1254789	23	2.0	23	95	0	81	20	57	13	8	1.62
1255075--1255136	30	2.0	31	84	3	81	38	1	19	40	1.61
1264174--1264219	24	1.9	24	90	0	74	43	0	2	54	1.12
1271364--1271496	69	1.9	70	87	1	196	36	18	11	34	1.86
1277778--1277837	31	1.9	31	86	0	84	33	10	21	35	1.87
1279407--1279487	30	2.8	28	85	10	108	39	0	3	56	1.17
1281216--1281255	21	2.0	21	85	5	55	67	0	5	27	1.11
1282053--1282116	20	3.4	20	66	29	59	31	3	18	46	1.65
1282046--1282166	35	3.4	36	84	6	156	33	3	18	45	1.65
1286597--1286716	35	3.3	37	85	9	158	31	5	19	44	1.72
1292937--1292983	20	2.4	19	82	10	67	53	10	17	19	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1292544--1293016	180	2.6	183	90	1	718	41	13	17	27	1.87
1295221--1295285	21	3.1	21	88	0	85	43	10	27	18	1.83
1295319--1295384	33	2.0	33	93	0	114	30	0	46	22	1.52
1295539--1295579	18	2.4	16	81	14	55	65	2	17	14	1.37
1295573--1295659	33	2.6	33	92	3	140	52	0	43	3	1.18
1297199--1297247	19	2.6	19	96	0	89	32	2	10	55	1.45
1297477--1298262	200	3.9	200	94	0	1367	36	14	16	31	1.90
1301164--1301510	183	1.9	183	95	2	635	36	14	15	33	1.88
1304526--1304570	22	2.0	22	86	0	63	40	11	6	42	1.67
1304616--1304953	112	3.0	113	94	1	583	26	12	13	47	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12