genome.fa.s7961.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007961.1 Hibiscus syriacus cultivar Beakdansim tig00110388_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2700559

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  2  of  12  ( 1371 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286740--286782	13	2.9	15	80	16	54	34	0	0	65	0.93
286745--286791	21	2.1	22	85	14	62	31	0	0	68	0.90
288156--288186	16	2.0	16	93	6	55	12	3	6	77	1.08
304273--304313	21	1.9	22	85	5	57	24	41	24	9	1.85
314642--314723	42	2.0	40	83	9	103	46	3	2	47	1.33
320120--320152	16	2.0	17	94	5	59	33	6	24	36	1.80
320902--320934	15	2.1	16	88	5	50	51	15	24	9	1.72
333669--333754	39	2.2	39	93	0	154	18	27	17	36	1.94
336364--336389	7	3.7	7	100	0	52	88	0	0	11	0.52
336724--336755	12	2.7	12	90	0	55	50	0	0	50	1.00
337049--337074	6	4.3	6	100	0	52	50	0	0	50	1.00
339070--339193	60	2.1	60	100	0	248	33	24	12	29	1.93
343555--343745	101	1.9	100	89	3	294	34	18	14	32	1.91
349982--350028	20	2.4	19	79	10	58	53	8	17	21	1.70
349770--350242	181	2.6	182	90	1	716	42	12	16	27	1.85
350163--350209	20	2.4	19	79	10	58	53	8	17	21	1.70
352423--352487	21	3.1	21	88	0	94	41	9	30	18	1.82
352519--352583	33	2.0	33	90	0	103	27	0	49	23	1.50
354022--354114	21	4.6	20	78	4	96	38	16	24	20	1.92
354019--354114	41	2.3	41	94	0	165	39	15	23	20	1.91
354019--354114	20	4.7	21	79	5	106	39	15	23	20	1.91
354103--354197	20	4.7	20	78	2	82	34	23	17	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
356048--356092	18	2.5	18	85	0	63	26	42	15	15	1.87
356565--356631	20	3.4	20	81	2	73	38	23	22	14	1.92
356620--356677	14	3.9	14	79	16	71	48	25	17	8	1.75
356604--356693	32	2.8	33	94	3	164	46	23	18	11	1.81
356711--356800	14	5.9	14	73	19	81	8	16	25	48	1.75
356706--356816	32	3.4	32	94	1	195	9	18	24	47	1.78
356789--356855	19	3.5	19	83	4	89	14	23	23	37	1.93
356801--356855	20	2.8	19	89	5	83	16	25	23	34	1.95
358718--358753	14	2.6	14	90	0	54	30	0	22	47	1.52
358870--358937	19	3.8	19	85	14	101	47	17	22	13	1.82
358956--359012	20	2.8	20	94	0	96	21	22	17	38	1.93
359380--359415	14	2.6	14	90	0	54	30	0	22	47	1.52
359969--360004	14	2.6	14	90	0	54	30	0	22	47	1.52
360121--360188	19	3.8	19	85	14	101	47	17	22	13	1.82
360216--360283	20	3.4	20	100	0	136	25	23	16	35	1.95
360195--360283	40	2.4	35	80	20	110	21	23	16	38	1.93
360207--360283	40	1.9	40	94	0	136	23	23	15	37	1.93
360650--360685	14	2.6	14	90	0	54	30	0	22	47	1.52
361238--361273	14	2.6	14	90	0	54	30	0	22	47	1.52
361828--361863	14	2.6	14	90	0	54	30	0	22	47	1.52
360247--362239	590	3.4	590	98	0	3868	32	12	18	36	1.88
363104--363162	24	2.5	24	82	0	73	28	16	18	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363337--363361	12	2.1	12	100	0	50	72	0	28	0	0.86
365651--365748	19	5.7	19	69	22	90	43	19	24	12	1.85
365651--365744	33	2.8	33	98	0	179	43	19	24	12	1.85
365744--365786	20	2.2	20	83	4	52	16	16	23	44	1.86
365927--365963	14	2.6	14	91	0	65	45	24	0	29	1.53
367318--367384	21	3.2	21	68	4	55	19	20	35	23	1.95
367318--367440	42	2.9	41	80	7	113	22	17	36	22	1.95
369435--369594	19	8.8	19	73	15	115	43	19	23	13	1.86
369460--369594	33	3.9	33	87	5	144	42	20	24	12	1.87
369530--369599	19	3.7	19	98	0	131	45	21	21	11	1.83
369595--369638	19	2.3	19	88	0	61	11	15	25	47	1.79
369606--369658	19	2.7	19	85	2	61	13	18	20	47	1.82
370177--370214	20	2.0	19	85	10	51	31	15	26	26	1.96
370200--370259	20	2.9	21	72	5	59	20	16	20	43	1.88
370183--370277	41	2.3	41	80	3	102	21	20	22	36	1.95
371077--371125	19	2.6	19	96	0	89	32	2	10	55	1.45
371244--372318	200	5.4	200	97	0	2008	37	15	17	30	1.90
371244--372318	399	2.7	400	97	0	2017	37	15	17	30	1.90
372629--372696	23	3.0	23	91	0	109	35	5	20	38	1.77
373110--373168	23	2.6	23	88	0	82	38	5	16	38	1.71
373110--373182	23	3.2	23	84	3	76	36	4	17	41	1.69
372315--373336	486	2.1	485	94	1	1778	40	7	11	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373541--373613	23	3.2	23	92	0	119	34	5	21	38	1.77
380779--380826	16	2.9	16	84	6	60	35	4	0	60	1.16
381573--381633	31	2.0	31	86	0	86	50	3	11	34	1.55
394469--394544	35	2.2	35	92	0	125	39	23	1	35	1.63
394941--395188	130	1.9	130	93	0	424	36	15	12	35	1.86
394955--395219	130	2.0	129	81	4	309	39	13	13	33	1.83
395658--395691	16	2.0	18	88	11	54	64	5	2	26	1.30
397146--397201	15	3.6	15	79	9	67	42	12	12	32	1.80
397149--397199	17	3.1	17	77	11	61	43	11	9	35	1.75
397370--397422	21	2.5	21	93	0	88	28	28	22	20	1.99
397618--397672	13	4.2	13	75	13	58	49	12	3	34	1.59
397658--397756	33	3.0	33	94	1	164	45	15	7	32	1.73
401476--401539	22	3.1	22	62	25	57	48	17	6	28	1.71
401444--401539	40	2.4	40	92	0	156	46	16	7	29	1.74
402244--402284	21	1.9	22	90	5	66	46	14	2	36	1.58
402257--402356	40	2.5	40	88	1	148	49	19	5	27	1.69
403779--403829	24	2.1	24	100	0	102	35	3	19	41	1.70
404216--404313	40	2.5	40	91	3	153	45	14	9	30	1.76
404223--404285	22	3.0	22	63	25	55	46	15	9	28	1.78
409080--409127	22	2.2	22	78	14	55	39	12	6	41	1.68
409145--409217	23	3.2	23	90	0	110	35	5	20	38	1.76
408723--410016	489	2.6	489	95	0	2331	40	6	11	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409634--409706	23	3.2	23	90	0	110	35	5	20	38	1.76
409740--410297	281	2.0	281	96	0	1017	39	5	10	44	1.62
410404--410476	23	3.2	23	88	0	101	34	5	21	38	1.77
410512--411066	280	2.0	281	97	0	1040	39	5	10	44	1.62
409251--413994	769	6.0	770	75	13	4669	38	8	12	40	1.73
411111--411155	22	2.0	22	86	0	63	40	8	11	40	1.72
411173--411245	23	3.2	23	88	0	110	34	5	20	39	1.76
411298--411388	31	3.0	31	95	3	159	34	6	16	42	1.74
411453--411495	19	2.3	19	91	0	68	39	9	11	39	1.74
411531--411571	21	2.0	21	95	0	73	24	19	29	26	1.98
411601--411640	20	1.9	21	85	10	55	37	37	10	15	1.80
411855--411924	34	2.1	32	86	5	95	32	15	30	21	1.94
412184--412734	280	2.0	281	96	1	1016	38	5	10	45	1.63
412844--412916	23	3.2	23	90	0	110	35	5	20	38	1.76
412950--413505	281	2.0	279	95	0	1004	39	5	10	45	1.61
413612--413685	23	3.2	23	88	0	112	32	5	21	40	1.76
414101--414173	23	3.2	23	90	0	110	34	6	20	38	1.79
414591--414663	23	3.2	23	88	0	110	35	5	20	38	1.76
413229--415060	489	3.8	489	96	0	3307	40	7	11	40	1.69
413229--415060	979	1.9	973	95	0	3324	40	7	11	40	1.69
415401--415509	53	2.1	53	89	0	164	38	19	6	35	1.77
417001--418009	81	12.5	81	90	0	1527	36	10	20	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417001--418659	243	7.1	243	82	8	1807	36	10	21	32	1.87
417960--418063	54	1.9	54	96	0	190	34	11	20	33	1.88
417875--418283	135	3.0	134	94	1	710	35	10	22	32	1.88
418091--418202	54	2.1	54	94	0	197	36	11	20	31	1.88
418145--418659	81	6.3	80	89	1	717	35	10	21	31	1.88
417714--418364	216	3.0	213	79	10	773	36	10	21	31	1.88
417794--418448	216	3.0	215	78	8	788	35	10	21	31	1.88
419719--419787	23	3.0	23	84	0	102	30	26	26	17	1.97
432679--432706	12	2.3	12	100	0	56	14	25	42	17	1.87
433633--433671	2	19.5	2	100	0	78	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12