genome.fa.s7961.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007961.1 Hibiscus syriacus cultivar Beakdansim tig00110388_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2700559

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  5  of  12  ( 1371 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
775709--775758	24	2.1	24	92	3	84	36	12	18	34	1.87
776114--776158	2	22.5	2	100	0	90	48	0	0	51	1.00
776304--776363	25	2.4	25	85	0	66	35	13	13	38	1.84
776668--776806	21	6.7	21	76	3	129	19	18	26	35	1.95
776660--776847	62	3.0	62	91	1	279	18	19	25	36	1.95
776709--776824	41	2.8	42	85	5	164	19	19	27	32	1.97
776668--776847	21	8.8	20	72	10	105	18	20	25	35	1.95
776878--776915	6	6.5	6	93	6	69	31	52	15	0	1.43
776878--776943	14	4.2	17	85	14	81	27	54	18	0	1.44
776882--776946	5	12.6	5	90	9	80	26	53	20	0	1.45
786440--786498	29	2.0	29	100	0	118	49	13	13	23	1.78
787249--788120	435	2.0	434	96	3	1621	27	22	17	32	1.96
791473--791531	29	2.0	29	100	0	118	49	13	13	23	1.78
793369--793432	32	2.0	33	84	3	85	31	9	29	29	1.88
796512--796644	31	4.3	31	88	5	180	41	15	6	37	1.71
796512--796644	61	2.2	62	86	4	180	41	15	6	37	1.71
800498--800528	12	2.6	12	89	0	53	48	22	12	16	1.80
800953--800977	2	12.5	2	100	0	50	52	0	0	48	1.00
806597--806641	17	2.7	16	80	10	54	0	11	4	84	0.76
812654--812695	18	2.4	17	88	4	57	0	7	4	88	0.64
813891--813916	7	3.7	7	100	0	52	88	0	11	0	0.52
813854--813914	26	2.4	26	81	13	65	78	1	9	9	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
820623--820678	21	2.7	21	81	15	64	44	0	3	51	1.18
824569--824619	24	2.1	24	100	0	102	23	23	15	37	1.93
825938--825993	7	7.7	7	88	9	69	44	0	10	44	1.38
825938--825999	22	2.9	21	80	17	74	46	0	9	43	1.36
844975--845313	137	2.5	133	83	4	407	29	12	13	44	1.80
854155--854265	45	2.5	44	85	5	125	28	15	22	33	1.94
855309--855457	72	2.1	72	92	0	244	36	12	26	24	1.90
859881--859981	36	2.8	37	80	8	118	36	19	17	25	1.94
859883--859997	36	3.2	35	78	8	106	34	20	19	26	1.96
860293--860371	37	2.2	36	86	2	104	43	16	20	20	1.89
860371--860503	54	2.5	54	92	2	225	35	19	24	20	1.96
860481--861051	55	10.8	55	81	9	552	29	15	24	30	1.96
863630--863895	131	2.0	131	97	1	507	36	10	15	38	1.81
865985--866012	9	3.1	9	100	0	56	25	32	21	21	1.98
864790--867392	879	3.0	868	91	6	4161	34	15	16	33	1.91
869125--869152	14	2.0	14	100	0	56	14	14	0	71	1.15
869267--869321	25	2.2	25	93	0	92	32	12	20	34	1.90
869848--869916	31	2.3	30	94	2	120	23	23	11	42	1.86
889789--889834	21	2.2	21	88	0	65	41	17	8	32	1.80
889961--890013	25	2.1	25	96	0	97	26	15	11	47	1.79
890338--890387	21	2.4	22	80	16	61	54	2	0	44	1.11
890564--890694	65	2.0	65	88	8	196	41	4	11	42	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
892635--892709	11	6.7	11	71	17	57	49	1	1	48	1.18
892652--892710	23	2.6	22	81	7	64	50	1	1	45	1.21
892750--892819	29	2.3	32	81	13	85	51	4	1	42	1.30
892767--892828	27	2.1	30	82	11	76	59	1	1	37	1.17
893012--893051	14	2.9	14	88	0	53	40	15	12	32	1.84
893039--893079	20	2.0	20	85	0	55	34	19	7	39	1.80
893053--893098	15	3.1	15	81	6	67	30	19	8	41	1.82
896473--896506	17	2.1	16	88	5	50	14	8	0	76	1.01
897399--897439	22	1.9	21	85	14	57	26	34	24	14	1.94
902876--902935	21	2.8	21	84	5	75	23	33	20	23	1.97
905484--905539	21	2.7	21	91	0	76	23	25	32	19	1.98
909432--909465	3	11.3	3	100	0	68	64	0	0	35	0.94
917833--918107	136	2.1	130	89	5	408	57	4	11	26	1.54
917833--918144	136	2.4	133	83	10	351	58	4	11	25	1.50
918175--918210	2	18.5	2	94	5	65	52	0	0	47	1.00
918173--918218	14	3.6	13	83	11	51	54	4	0	41	1.20
919799--920574	105	7.4	105	95	0	1318	22	18	25	33	1.96
932116--932397	135	2.1	137	90	2	442	57	4	11	26	1.53
932453--932479	2	13.5	2	100	0	54	51	48	0	0	1.00
934172--934200	2	14.5	2	100	0	58	48	0	0	51	1.00
935323--935349	14	1.9	14	100	0	54	51	11	0	37	1.37
936009--936100	2	46.0	2	100	0	184	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
939065--939116	20	2.5	21	78	3	52	46	1	1	50	1.23
939149--939190	19	2.2	19	91	0	66	42	21	0	35	1.53
948123--948165	23	1.9	22	90	4	68	27	20	25	25	1.99
949203--949266	30	2.1	30	82	5	76	53	18	4	23	1.64
949706--949782	39	2.0	39	87	5	111	33	10	9	46	1.70
951477--951632	64	2.4	65	86	5	210	30	19	21	27	1.98
952255--952297	13	3.2	13	80	6	50	41	0	2	55	1.12
952275--952329	25	2.2	25	86	0	74	32	7	3	56	1.44
957390--957424	12	3.0	12	87	4	54	74	0	0	25	0.82
957387--957429	11	3.9	11	82	8	52	74	2	0	23	0.93
957341--957550	115	1.8	112	85	7	289	54	6	5	33	1.49
958334--958388	23	2.3	24	81	6	67	21	12	20	45	1.84
958351--958435	23	3.7	23	85	0	107	22	16	22	38	1.92
965709--965741	14	2.3	14	94	5	57	12	6	15	66	1.42
971632--971662	15	2.1	15	93	0	53	70	9	0	19	1.14
971864--972152	55	5.3	55	85	2	287	29	26	14	29	1.96
971922--972173	110	2.3	109	87	5	332	30	26	15	26	1.96
972185--972299	37	3.1	37	84	3	142	23	18	19	39	1.92
973381--973532	44	3.5	42	75	20	129	8	16	0	74	1.10
973398--973476	16	5.3	15	70	24	53	6	16	1	75	1.06
973395--973519	12	9.1	13	70	24	80	8	18	0	72	1.13
973389--973522	61	2.2	59	78	10	137	8	17	0	73	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
973398--973555	13	10.7	15	68	19	59	8	17	0	74	1.10
973485--973548	23	3.0	22	77	13	71	9	14	0	76	1.01
973457--973555	45	2.2	44	85	5	128	9	16	0	74	1.05
983200--983342	45	3.1	46	86	7	184	37	20	13	27	1.91
983200--983325	45	2.8	45	90	1	189	36	22	14	26	1.92
986617--986714	51	1.9	51	89	0	151	34	16	13	35	1.87
986703--986868	23	7.5	23	74	13	134	49	1	28	20	1.57
987124--987162	21	1.9	20	84	5	51	30	12	2	53	1.52
987549--987574	10	2.6	10	100	0	52	76	0	0	23	0.78
987593--987629	2	18.5	2	100	0	74	48	0	0	51	1.00
990214--990263	21	2.4	21	75	21	52	38	0	10	52	1.35
992896--992945	19	2.6	19	96	0	91	38	20	2	40	1.64
999575--999652	37	2.1	38	81	13	92	50	5	1	43	1.32
1003009--1003074	34	1.9	34	96	0	123	43	21	19	15	1.87
1003009--1003094	20	4.6	20	70	18	67	41	19	22	16	1.90
1003038--1003094	20	2.8	20	81	2	69	42	17	24	15	1.88
1003083--1003213	20	6.7	19	77	12	88	32	25	18	23	1.97
1003125--1003155	16	1.9	16	93	0	53	29	29	19	22	1.98
1003381--1003424	22	2.0	22	90	0	70	20	43	15	20	1.88
1003687--1003745	20	3.0	20	87	0	73	16	18	22	42	1.89
1005011--1005055	18	2.5	18	88	0	72	26	44	15	13	1.83
1005537--1005592	20	2.8	20	83	2	69	37	23	23	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1005576--1005663	32	2.7	33	89	3	142	47	19	19	13	1.82
1005592--1005649	14	3.9	14	72	16	53	50	20	17	12	1.78
1005683--1005740	14	3.9	14	75	16	62	10	17	24	48	1.78
1005678--1005756	32	2.4	33	93	2	133	11	18	22	46	1.81
1005750--1005796	20	2.3	20	88	0	67	17	23	23	36	1.95
1005829--1005895	25	2.6	26	76	11	75	22	8	16	52	1.71
1007586--1007636	20	2.5	20	93	0	93	21	31	17	29	1.96
1008372--1008425	24	2.2	24	90	0	81	24	16	20	38	1.92
1010898--1011021	33	3.8	33	83	4	169	44	18	21	15	1.86
1010896--1011028	66	2.0	66	92	0	221	42	18	21	17	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12