genome.fa.s8017.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008017.1 Hibiscus syriacus cultivar Beakdansim tig00110483_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3132588

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  15  of  15  ( 1748 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2940357--2940399	13	3.1	14	83	10	61	27	0	2	69	1.00
2940576--2940617	20	2.2	19	86	4	57	35	0	0	64	0.94
2946010--2946053	11	3.8	11	79	8	52	79	0	20	0	0.73
2946010--2946053	23	2.0	22	90	4	70	79	0	20	0	0.73
2948370--2948711	115	3.0	115	91	0	533	34	14	19	30	1.92
2950780--2950932	50	2.9	53	77	6	159	37	13	20	27	1.91
2951285--2951339	22	2.5	22	87	0	83	34	14	14	36	1.87
2951768--2951899	39	3.7	37	72	21	129	44	11	25	18	1.83
2951826--2952688	113	7.8	113	89	4	1249	36	15	20	27	1.93
2951828--2952688	336	2.6	334	89	4	1253	36	15	20	27	1.93
2952946--2952991	22	2.0	23	91	4	76	23	0	4	71	1.03
2954383--2954425	20	2.2	20	86	0	59	37	0	4	58	1.19
2954473--2954522	23	2.2	22	85	3	64	46	2	0	52	1.12
2955690--2955722	13	2.7	13	90	9	52	18	9	0	72	1.10
2961159--2961211	23	2.3	23	80	6	63	28	26	24	20	1.99
2961227--2961444	103	2.1	103	94	0	382	38	23	13	24	1.91
2961989--2962031	21	2.0	21	90	0	68	16	23	27	32	1.96
2963747--2963873	46	2.7	47	77	8	118	29	7	16	47	1.73
2965092--2965129	16	2.3	17	90	4	60	26	0	5	68	1.11
2977694--2977913	88	2.5	86	75	5	199	28	15	25	30	1.96
2977694--2978023	43	7.6	43	78	4	223	26	16	25	31	1.96
2978000--2978113	43	2.7	42	79	5	140	28	16	25	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2978436--2978476	21	2.0	21	90	0	64	4	31	21	41	1.74
2981184--2981299	41	2.8	41	77	16	114	35	18	18	27	1.94
2982720--2982840	41	3.0	42	87	3	176	33	17	15	33	1.91
2993710--2994032	161	2.0	162	98	0	630	29	19	22	28	1.98
2995580--2995613	12	2.8	12	95	4	59	67	0	0	32	0.91
2995864--2995899	18	1.9	19	94	5	65	58	0	2	38	1.13
2998352--2998420	23	3.0	23	84	0	102	30	26	26	17	1.97
3003390--3003465	31	2.5	30	80	6	82	52	19	1	26	1.54
3005086--3005402	157	2.0	157	96	0	580	25	15	21	37	1.93
3012818--3012857	19	2.0	20	85	4	55	60	15	7	17	1.57
3024993--3025051	29	2.0	30	90	9	95	47	1	5	45	1.34
3030997--3031070	39	2.0	36	85	12	98	32	10	29	27	1.90
3033958--3033990	13	2.5	13	86	13	50	24	6	0	69	1.10
3033914--3033987	15	5.1	15	69	21	59	28	8	1	62	1.32
3034004--3034111	2	57.5	2	75	18	90	41	2	0	55	1.14
3042582--3042624	21	2.0	21	81	0	50	30	30	25	13	1.94
3043167--3043482	150	2.1	150	92	1	528	26	16	21	35	1.94
3043450--3043494	23	2.0	23	86	0	63	20	26	26	26	1.99
3049500--3049542	21	2.0	21	81	0	50	30	30	25	13	1.94
3050086--3050375	149	1.9	149	93	1	501	27	16	21	34	1.95
3053848--3053975	68	1.9	69	86	1	186	55	10	22	10	1.66
3053949--3053995	14	3.3	14	75	16	51	78	2	19	0	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3053951--3053996	15	2.9	15	78	15	56	80	2	17	0	0.81
3054726--3055713	106	9.3	106	89	1	1428	34	24	18	23	1.96
3057377--3057409	13	2.5	13	86	13	50	24	6	0	69	1.10
3057333--3057406	15	5.1	15	69	21	59	28	8	1	62	1.32
3057426--3057571	2	75.5	2	78	16	139	42	4	0	53	1.20
3061195--3061237	20	2.1	21	86	4	61	32	16	9	41	1.80
3061270--3061318	24	2.0	24	84	0	62	36	32	2	28	1.69
3072558--3072606	24	2.0	24	84	0	62	28	2	32	36	1.69
3081601--3081632	15	2.1	15	94	0	55	15	21	18	43	1.87
3082618--3082669	20	2.6	20	100	0	104	30	23	11	34	1.90
3087516--3087544	15	2.0	15	93	6	51	58	13	13	13	1.63
3087819--3087854	15	2.4	15	95	0	63	13	19	33	33	1.91
3087838--3087885	18	2.7	18	96	0	87	12	25	37	25	1.91
3093642--3093670	15	2.0	15	93	6	51	58	13	13	13	1.63
3093945--3093979	15	2.3	15	100	0	70	14	22	34	28	1.93
3094200--3094249	20	2.4	22	86	6	68	48	2	4	46	1.32
3094217--3094254	2	19.0	2	94	0	67	50	2	0	47	1.15
3105030--3105058	2	14.5	2	100	0	58	48	0	0	51	1.00
3104933--3105404	227	2.0	234	85	5	636	30	12	16	40	1.85
3106447--3106484	20	1.9	20	94	0	67	21	23	13	42	1.88
3111538--3111568	16	1.9	16	100	0	62	25	19	12	41	1.87
3114369--3114513	65	2.2	65	100	0	290	44	8	10	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3117816--3117865	21	2.4	21	83	6	66	42	2	4	52	1.31
3126006--3126069	31	2.1	31	91	5	103	31	9	7	51	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15

The End!