genome.fa.s8017.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008017.1 Hibiscus syriacus cultivar Beakdansim tig00110483_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3132588

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  8  of  15  ( 1748 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1586387--1586435	12	4.1	12	97	0	89	2	24	0	73	0.94
1586387--1586431	6	7.5	6	84	0	63	2	22	0	75	0.91
1586391--1586435	3	15.0	3	80	0	54	2	24	0	73	0.95
1587440--1587491	21	2.5	21	87	3	70	38	17	23	21	1.93
1587476--1587565	20	4.6	20	71	8	67	40	21	18	20	1.92
1587775--1587839	20	3.4	20	68	12	64	40	23	20	16	1.92
1587852--1587921	33	2.2	32	81	2	77	20	20	21	38	1.94
1587865--1587942	33	2.4	32	86	4	102	12	20	23	43	1.86
1588050--1588086	14	2.6	14	86	0	56	48	21	0	29	1.50
1589313--1589378	20	3.4	19	72	6	60	19	16	37	25	1.93
1589738--1589805	20	3.5	19	82	6	82	38	23	23	14	1.92
1589818--1589888	33	2.2	33	92	2	117	14	16	21	47	1.81
1589873--1589916	20	2.2	20	88	4	63	18	25	20	36	1.95
1592271--1592373	37	2.7	39	77	6	111	26	17	25	31	1.97
1592244--1592374	20	6.7	20	80	7	126	25	17	24	32	1.97
1592244--1592377	57	2.3	58	84	7	171	24	17	23	34	1.96
1592707--1592747	21	2.0	21	95	0	73	24	7	43	24	1.79
1592836--1593028	41	4.7	41	79	1	197	40	14	18	26	1.89
1597330--1597636	153	2.0	153	100	0	614	30	14	17	37	1.90
1598540--1598568	3	10.0	3	92	7	51	34	0	0	65	0.93
1599227--1599262	17	2.1	18	94	5	65	30	38	0	30	1.58
1602603--1602641	19	2.0	21	90	10	64	41	28	2	28	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1602976--1603031	18	3.3	18	68	27	59	26	10	0	62	1.28
1602969--1603034	32	2.1	32	100	0	132	27	12	0	60	1.32
1603434--1603981	264	2.1	264	84	1	713	34	14	11	40	1.81
1606537--1606661	62	2.0	62	89	3	189	20	19	21	38	1.94
1606537--1606647	31	3.6	31	96	0	195	18	19	21	39	1.92
1608579--1608630	12	4.3	12	80	9	70	21	0	53	25	1.45
1610112--1610165	27	2.0	27	100	0	108	33	11	33	22	1.89
1617350--1617426	27	2.8	27	71	13	68	45	2	3	48	1.34
1619374--1619410	18	2.1	18	89	0	56	45	10	27	16	1.80
1631872--1631921	26	1.9	26	84	8	66	32	16	10	42	1.81
1636410--1636466	25	2.3	25	78	0	60	29	22	19	28	1.98
1638851--1638896	24	1.9	24	100	0	92	23	8	15	52	1.70
1639293--1639328	7	5.1	7	89	0	54	55	0	0	44	0.99
1639406--1639436	2	16.0	2	93	6	55	51	0	0	48	1.00
1646187--1646251	32	2.1	32	94	5	116	36	7	3	52	1.46
1646416--1646475	25	2.5	24	83	8	77	56	1	3	38	1.26
1647091--1647146	22	2.6	21	78	18	62	71	0	1	26	0.96
1647121--1647159	17	2.3	17	83	12	53	61	0	0	38	0.96
1647124--1647159	18	2.1	18	89	5	56	61	0	0	38	0.96
1649397--1649481	15	5.3	15	72	14	62	65	3	4	25	1.28
1649417--1649497	30	2.9	28	79	16	87	66	3	4	24	1.28
1649462--1649528	27	2.4	27	76	13	66	64	5	5	23	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1649557--1649601	19	2.2	21	84	7	58	66	0	8	24	1.20
1649627--1649677	2	25.5	2	95	0	93	52	0	0	47	1.00
1649623--1649736	36	3.6	31	80	15	94	57	0	3	37	1.22
1649588--1649748	12	14.9	10	72	15	67	57	0	4	37	1.23
1651794--1651854	2	31.0	2	93	3	106	50	1	0	47	1.10
1652014--1652050	17	2.0	20	85	15	53	75	0	5	18	0.99
1652382--1652493	37	3.0	37	94	0	197	34	11	13	40	1.81
1653636--1654175	110	4.9	110	92	0	882	24	17	23	34	1.96
1658243--1658280	19	2.2	18	86	13	53	76	0	10	13	1.02
1658278--1658324	16	2.8	18	78	15	55	68	0	19	12	1.21
1658333--1658373	3	13.7	3	94	0	73	65	2	0	31	1.05
1659027--1659101	22	3.5	21	74	17	73	24	10	14	50	1.74
1659093--1659167	37	2.0	37	94	0	132	36	12	12	40	1.79
1662246--1662291	2	23.5	2	95	4	85	50	0	0	50	1.00
1662641--1662696	24	2.2	25	81	12	62	41	1	5	51	1.35
1666495--1666525	16	1.9	16	93	0	53	41	0	0	58	0.98
1667358--1667408	21	2.5	20	78	12	59	45	5	1	47	1.38
1668199--1668242	2	21.5	2	95	4	79	47	2	0	50	1.13
1675716--1675754	18	2.2	18	85	0	51	33	17	7	41	1.79
1680557--1680590	18	1.9	18	94	5	61	64	0	0	35	0.94
1690218--1690310	21	4.5	21	78	4	100	39	18	24	17	1.91
1690218--1690310	41	2.3	41	100	0	186	39	18	24	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1690237--1690371	41	3.3	41	82	6	132	38	20	21	19	1.94
1690299--1690392	20	4.7	20	80	2	89	34	24	18	23	1.96
1690908--1690974	19	3.5	19	85	2	89	47	25	16	10	1.78
1690970--1691154	19	10.1	19	76	14	165	11	21	22	44	1.85
1690970--1691059	39	2.3	38	96	1	162	11	18	22	47	1.80
1690970--1691070	39	2.6	39	89	4	116	9	19	24	45	1.81
1691042--1691129	33	2.6	33	92	1	140	11	25	25	38	1.89
1691097--1691154	20	2.9	20	80	10	64	13	24	18	43	1.87
1693149--1693241	42	2.2	42	82	0	105	22	36	16	24	1.94
1694626--1694661	14	2.6	14	95	0	63	30	0	25	44	1.54
1694839--1694902	19	3.6	19	66	20	57	14	25	18	42	1.88
1694836--1694918	33	2.5	33	77	14	107	19	21	19	39	1.92
1698707--1698764	14	3.9	14	75	16	62	12	17	22	48	1.80
1698694--1698780	32	2.7	33	89	3	140	14	18	19	47	1.83
1698765--1698808	20	2.2	20	84	4	54	20	25	18	36	1.95
1698772--1698819	20	2.4	20	82	0	60	18	22	22	35	1.96
1699292--1699336	18	2.5	18	88	0	72	13	15	44	26	1.83
1700956--1700999	22	2.0	22	95	0	79	18	15	45	20	1.85
1701186--1701234	20	2.5	20	93	0	80	24	18	26	30	1.98
1701166--1701280	20	5.7	20	76	5	79	24	17	22	35	1.95
1701206--1701283	41	1.9	41	83	0	102	23	16	20	39	1.92
1701269--1701361	20	4.5	21	78	4	100	17	24	18	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1701269--1701361	41	2.3	41	100	0	150	17	24	18	39	1.91
1704560--1704605	23	2.0	23	83	8	58	15	17	23	43	1.87
1704401--1704618	113	1.9	113	97	0	409	23	21	22	32	1.98
1711429--1711495	33	2.0	33	97	0	125	44	22	19	13	1.85
1712343--1712392	21	2.4	21	93	0	82	18	26	36	20	1.95
1724716--1724791	39	1.9	39	84	5	100	44	6	5	43	1.52
1726186--1726218	14	2.2	16	89	10	52	18	6	0	75	1.00
1727905--1727962	27	2.2	26	79	8	64	15	17	8	58	1.61
1729930--1730663	105	7.0	105	95	1	1265	32	24	19	24	1.98
1730861--1731353	165	3.0	164	90	2	767	31	23	19	25	1.98
1730862--1731347	80	6.0	79	77	7	445	31	24	19	25	1.98
1734057--1734180	20	6.2	20	93	0	176	38	23	16	21	1.92
1734171--1734216	20	2.3	20	96	0	83	43	23	13	19	1.86
1734057--1734180	40	3.1	40	90	0	194	38	23	16	21	1.92
1734347--1734425	22	3.6	22	80	0	86	25	37	12	24	1.90
1734784--1734829	19	2.3	20	85	3	58	30	34	15	19	1.93
1734840--1734902	21	3.1	21	84	4	76	17	20	15	46	1.85
1736815--1736856	12	3.5	12	83	6	50	23	0	7	69	1.13
1736996--1737058	20	3.1	20	78	13	74	20	33	20	25	1.97
1738414--1738562	64	2.3	64	94	0	253	28	2	17	51	1.56
1738624--1738745	20	6.1	20	79	3	129	40	19	18	22	1.92
1738629--1738752	40	3.1	40	80	6	144	38	18	19	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1738630--1738745	60	1.9	60	83	0	151	40	18	17	23	1.91
1742337--1742382	21	2.2	20	88	3	74	34	13	26	26	1.92
1747604--1747661	25	2.4	25	76	2	64	37	5	15	41	1.70
1760394--1760425	16	1.9	17	93	6	57	37	21	3	37	1.70
1762476--1762520	21	2.1	21	87	0	63	31	28	24	15	1.96
1763462--1763491	2	15.0	2	100	0	60	50	0	0	50	1.00
1763848--1763875	14	2.0	14	100	0	56	28	7	28	35	1.84
1763976--1764586	149	4.1	149	98	0	1174	26	17	21	34	1.95
1764554--1764598	23	2.0	23	86	0	63	22	24	28	24	1.99
1767723--1767767	21	2.1	21	87	0	63	31	28	24	15	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15