genome.fa.s8017.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008017.1 Hibiscus syriacus cultivar Beakdansim tig00110483_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3132588

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  2  of  15  ( 1748 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282427--282542	33	3.4	33	85	11	160	10	21	22	45	1.82
282444--282542	19	5.5	19	84	11	145	11	22	21	45	1.83
284019--284092	21	3.5	21	76	7	87	21	24	28	25	1.99
283999--284107	21	5.2	21	65	6	69	20	20	34	24	1.96
283999--284101	42	2.5	42	98	0	197	20	19	35	24	1.95
284072--284159	42	2.1	42	82	0	104	23	14	37	23	1.92
284579--284632	20	2.8	19	88	5	81	46	18	22	12	1.83
284632--284673	20	2.1	20	95	0	75	7	14	26	52	1.67
284637--284741	33	3.1	33	83	2	120	10	20	20	48	1.78
284702--284744	20	2.2	20	91	0	68	16	23	9	51	1.73
284837--285118	94	3.1	93	91	3	437	47	18	12	22	1.81
285855--285897	21	2.0	22	82	13	54	48	2	4	44	1.36
286745--286807	20	3.2	20	77	8	74	44	17	23	14	1.85
286832--286924	33	2.8	33	88	1	123	11	21	23	43	1.86
287471--287564	20	4.7	20	85	2	134	21	21	19	38	1.94
287451--287564	41	2.8	40	84	5	149	22	21	20	35	1.96
287561--287606	21	2.2	21	88	0	65	36	17	28	17	1.92
287575--287666	47	2.0	47	100	0	184	31	21	26	20	1.98
293045--293097	22	2.4	22	100	0	106	37	13	7	41	1.72
293978--294097	34	3.3	34	90	9	168	25	5	20	50	1.68
293963--294111	42	3.7	42	86	13	242	24	4	20	50	1.67
297869--297932	21	3.2	20	80	8	67	28	0	23	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304295--304343	25	1.9	26	84	12	66	34	24	14	26	1.94
319908--319932	3	8.3	3	100	0	50	0	32	0	68	0.90
320545--320569	4	6.2	4	100	0	50	24	0	76	0	0.80
321661--321725	31	2.1	32	82	8	80	38	0	0	61	0.96
323926--324007	29	2.8	29	94	1	137	32	14	9	42	1.79
328692--328773	29	2.8	29	94	1	137	32	14	9	42	1.79
329840--330219	206	1.8	206	93	1	654	35	16	13	34	1.88
330166--330239	36	2.1	36	94	0	130	37	20	8	33	1.82
330182--330238	17	3.2	17	69	9	51	36	22	3	36	1.72
330554--330606	21	2.5	21	78	6	63	22	24	18	33	1.97
330596--330668	21	3.5	21	86	1	94	38	16	23	21	1.93
330636--330766	41	3.2	39	81	7	136	32	26	19	22	1.97
330657--330771	20	5.7	20	85	6	142	32	27	18	21	1.97
330958--331000	21	2.0	21	95	0	77	20	44	16	18	1.87
331812--331859	18	2.7	18	93	0	87	27	45	12	14	1.81
332388--332432	20	2.3	20	88	3	74	40	17	22	20	1.92
332396--332498	19	5.6	19	79	12	117	43	20	21	14	1.87
332510--332568	14	3.9	14	76	20	64	10	16	23	49	1.77
332505--332584	33	2.4	33	97	0	151	11	18	22	47	1.80
332526--332584	19	3.4	19	73	22	74	13	18	20	47	1.82
332557--332663	20	5.4	20	80	1	90	18	22	24	34	1.96
332614--332669	20	2.8	20	88	0	76	23	16	28	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
334692--334767	20	3.8	20	92	0	116	15	21	22	40	1.90
334982--335063	20	4.1	20	95	0	128	25	20	28	25	1.99
334991--335071	20	4.1	20	95	0	135	23	20	29	25	1.99
335109--335161	21	2.5	22	78	6	65	33	18	24	22	1.97
337114--337145	16	2.0	16	100	0	64	68	12	12	6	1.37
340274--340312	20	2.0	20	85	14	55	61	0	20	17	1.34
342720--342764	21	2.1	21	83	0	54	37	13	33	15	1.86
343265--343312	22	2.2	22	100	0	96	37	14	25	22	1.92
349689--349883	65	3.0	65	82	5	216	27	17	23	31	1.97
354898--354950	6	8.8	6	95	0	88	16	47	0	35	1.48
357582--357638	11	5.4	11	83	8	64	70	7	1	21	1.20
357581--357638	21	2.8	21	78	0	71	68	6	1	22	1.22
357581--357637	10	5.5	10	81	8	60	68	7	1	22	1.23
357580--357649	32	2.2	32	87	7	97	67	5	4	22	1.30
357592--357660	31	2.2	30	78	12	77	68	5	5	20	1.32
365435--365461	14	1.9	14	100	0	54	59	0	0	40	0.98
371009--371039	6	5.2	6	100	0	62	0	16	48	35	1.46
372096--372194	47	2.1	48	98	1	191	29	18	28	24	1.98
377516--377610	48	2.0	47	97	2	181	51	10	12	25	1.71
377900--377973	36	2.1	36	100	0	148	44	13	6	35	1.70
378370--378468	31	3.2	31	77	0	99	42	20	9	28	1.82
385868--385905	18	2.1	18	100	0	76	39	31	0	28	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389779--389835	29	2.0	29	100	0	114	14	35	31	19	1.91
389955--390029	24	3.3	24	77	21	97	10	28	38	22	1.87
389950--389982	14	2.4	14	100	0	66	6	30	42	21	1.77
389969--390012	10	4.4	10	88	11	72	9	29	38	22	1.85
399775--399927	44	3.5	44	86	4	213	20	11	23	44	1.84
406381--406426	14	2.9	16	78	15	51	58	0	2	39	1.10
407162--407234	2	36.5	2	94	0	128	50	2	0	46	1.15
412310--412349	21	1.9	21	84	0	53	17	25	37	20	1.94
412995--413428	213	2.0	219	95	3	790	46	18	12	23	1.82
414706--414738	13	2.5	13	90	9	50	45	6	18	30	1.73
419098--419137	21	1.9	21	90	10	64	30	5	7	57	1.48
419277--419315	15	2.4	17	79	20	55	15	41	10	33	1.81
419284--419319	15	2.4	15	100	0	72	19	38	13	27	1.90
423463--423567	52	2.0	52	100	0	210	20	17	21	40	1.92
424675--425105	41	10.5	40	72	9	262	28	19	16	35	1.94
424596--424974	81	4.7	81	78	7	342	27	18	17	35	1.94
424643--424972	164	2.0	163	88	1	482	28	18	16	36	1.93
424703--425123	205	2.1	205	83	4	528	27	20	16	35	1.94
424682--424996	82	3.9	82	77	7	300	28	18	17	34	1.94
432119--432189	24	3.0	24	93	2	117	28	25	28	18	1.98
432121--432189	23	2.9	24	93	2	113	28	26	28	15	1.96
437233--437257	2	12.5	2	100	0	50	0	48	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442662--442700	21	1.9	20	84	5	51	35	0	28	35	1.58
442766--442871	36	3.0	35	79	5	115	54	17	6	20	1.65
451719--452051	167	2.0	166	99	0	657	32	19	21	27	1.97
458045--458334	145	2.0	145	100	0	580	27	23	23	25	2.00
462832--462885	20	2.7	20	97	0	99	24	16	29	29	1.97
466830--466917	30	3.1	29	65	15	76	14	15	23	45	1.84
468707--469053	172	2.0	174	98	1	680	26	29	24	18	1.98
475438--475485	23	2.0	25	92	8	82	45	4	8	41	1.53
475468--475639	53	3.0	59	63	11	160	44	4	9	40	1.58
475527--475694	53	3.1	52	62	14	122	45	4	8	41	1.53
475458--475738	111	2.5	111	98	0	535	45	4	10	39	1.59
475969--476057	41	2.2	41	95	0	160	33	22	15	28	1.95
476333--476387	23	2.4	23	90	0	83	21	27	32	18	1.96
476348--476388	17	2.4	19	80	19	54	17	26	34	21	1.95
482217--482351	20	6.7	20	80	7	121	33	24	17	24	1.96
482214--482345	61	2.2	61	87	0	183	35	24	16	23	1.95
482519--482562	22	2.0	22	95	0	79	20	45	15	18	1.85
482826--482863	20	1.9	20	88	0	58	13	15	21	50	1.78
483000--483054	25	2.2	24	78	15	58	20	9	18	52	1.71
484182--484244	18	3.5	18	93	0	99	26	44	14	14	1.83
484737--484792	20	2.8	20	81	2	69	39	21	23	16	1.92
484781--484839	14	3.9	14	76	20	64	49	23	16	10	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
484765--484856	33	2.8	33	98	0	175	47	21	18	11	1.80
484765--484861	19	5.6	19	71	22	97	46	21	19	12	1.83
484918--484973	20	2.8	20	86	7	71	16	23	23	37	1.93
484868--484976	19	5.9	19	73	13	93	12	20	22	44	1.85
486845--486880	14	2.6	14	90	0	54	30	0	22	47	1.52
487017--487065	19	2.6	19	100	0	98	48	16	20	14	1.80
487111--487198	20	4.4	20	74	5	97	18	20	22	38	1.93
487489--487540	20	2.5	21	84	3	61	21	23	19	36	1.95
488553--488589	12	3.1	12	100	0	74	72	0	27	0	0.84
490881--491007	33	3.8	33	82	4	175	44	19	20	14	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15