genome.fa.s8027.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008027.1 Hibiscus syriacus cultivar Beakdansim tig00110503_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7662336

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   

This is table  33  of  38  ( 4505 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6703690--6703750	19	3.3	18	88	2	59	52	11	1	34	1.47
6703702--6703750	19	2.6	19	96	0	89	55	10	2	32	1.45
6705543--6705608	33	2.0	33	84	0	87	21	46	1	30	1.60
6705642--6705706	21	3.1	21	93	0	103	16	30	10	41	1.83
6707422--6707461	19	2.0	21	90	9	66	40	15	0	45	1.46
6707741--6707781	13	3.3	13	73	13	50	26	4	12	56	1.56
6707738--6707794	24	2.4	24	100	0	114	24	3	10	61	1.44
6707939--6707985	20	2.4	19	82	10	67	19	17	10	53	1.72
6707906--6708377	180	2.6	180	90	0	710	27	16	13	41	1.87
6710377--6710489	49	2.3	50	81	9	133	24	25	24	24	2.00
6710666--6710713	16	3.1	16	78	3	53	22	2	6	68	1.23
6714064--6714150	35	2.5	33	77	15	95	54	9	8	28	1.61
6716473--6716511	18	2.2	18	95	4	71	64	2	0	33	1.08
6716482--6716524	18	2.4	18	84	7	52	67	4	0	27	1.10
6716550--6716599	10	5.0	10	82	0	55	44	0	30	26	1.55
6730825--6730856	11	3.0	11	95	4	57	84	0	6	9	0.78
6730817--6730885	14	4.7	15	74	16	65	81	0	13	5	0.87
6730832--6730887	20	2.8	19	76	12	60	83	0	10	5	0.78
6730807--6730889	6	13.7	6	73	17	50	79	0	14	6	0.91
6730807--6730886	36	2.3	35	82	12	101	80	0	13	6	0.90
6730833--6730889	8	7.1	8	77	20	57	82	0	12	5	0.82
6730825--6730919	11	8.2	11	73	16	50	80	0	12	7	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6730807--6730942	19	6.9	19	73	15	89	76	0	16	7	1.00
6730807--6730956	50	3.0	51	75	7	137	76	0	16	6	1.03
6730807--6730956	49	3.0	49	72	13	135	76	0	16	6	1.03
6744964--6745049	9	9.2	9	73	18	61	74	0	16	9	1.06
6744982--6745067	18	5.2	16	77	17	72	72	1	17	9	1.17
6744954--6745084	66	2.0	66	80	7	149	73	0	17	8	1.12
6745040--6745084	24	1.9	24	86	4	65	75	2	17	4	1.07
6744981--6745127	42	3.4	42	76	12	129	72	1	18	8	1.17
6745035--6745104	31	2.3	31	80	12	81	71	1	21	5	1.15
6746409--6746480	37	2.0	36	88	2	108	36	20	22	20	1.96
6746491--6746689	51	3.7	50	81	11	191	29	16	24	30	1.96
6746495--6746744	55	4.6	56	83	9	247	29	16	24	30	1.96
6746474--6746744	111	2.5	105	78	14	295	30	15	23	30	1.96
6746609--6746774	55	3.0	54	81	6	172	30	15	21	31	1.95
6750160--6750200	2	20.5	2	89	0	64	46	2	2	48	1.28
6751576--6751617	21	2.2	20	83	12	52	42	0	0	57	0.99
6751864--6751896	16	2.1	16	100	0	66	69	12	12	6	1.35
6752863--6752928	15	4.4	15	83	7	89	37	6	18	37	1.75
6752858--6752943	45	1.9	44	90	2	136	41	5	18	33	1.74
6752863--6752943	30	2.7	30	92	5	130	39	6	18	35	1.76
6752927--6752976	20	2.5	20	90	0	82	40	8	14	38	1.75
6753141--6753244	29	3.5	29	79	19	101	52	1	0	44	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6753229--6753326	31	3.1	33	76	20	91	47	0	1	51	1.07
6753229--6753318	22	4.2	21	74	16	62	47	0	1	51	1.08
6753198--6753318	52	2.3	51	76	19	124	49	0	0	48	1.12
6753507--6753626	42	2.9	42	98	0	231	44	19	20	15	1.87
6753876--6753916	17	2.4	17	95	0	73	21	9	17	51	1.74
6754157--6754203	24	2.0	24	100	0	94	36	4	4	55	1.39
6754277--6754313	18	2.0	18	89	5	56	45	2	0	51	1.15
6756219--6756263	11	3.9	12	78	16	51	53	0	0	46	1.00
6756217--6756264	24	2.0	23	92	4	78	56	0	0	43	0.99
6757202--6757251	2	25.0	2	100	0	100	50	0	0	50	1.00
6757411--6757466	27	2.1	28	81	15	66	73	0	5	21	1.03
6762551--6762635	42	2.0	42	97	0	161	41	2	16	40	1.61
6763985--6764087	45	2.3	45	83	5	120	33	18	20	27	1.96
6764094--6764151	20	2.6	22	89	10	84	31	20	22	25	1.98
6767987--6768128	65	2.2	63	81	9	171	32	18	23	25	1.97
6768116--6768173	20	2.6	22	89	10	84	31	20	22	25	1.98
6770033--6770088	3	18.7	3	100	0	112	66	0	0	33	0.92
6770357--6770780	121	3.5	120	86	5	563	28	17	17	35	1.93
6772290--6772883	57	10.4	56	80	7	635	40	17	8	32	1.80
6772290--6772880	114	5.2	114	87	3	812	40	17	8	33	1.80
6778823--6778880	26	2.2	27	78	9	66	55	5	0	39	1.22
6786179--6786237	28	2.1	28	100	0	118	16	16	6	59	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6786918--6786959	20	2.1	20	86	0	57	21	14	21	42	1.88
6788324--6788350	13	2.1	13	100	0	54	29	0	22	48	1.51
6790902--6790939	16	2.5	15	80	20	51	31	0	7	60	1.25
6792996--6793030	7	5.0	7	92	0	61	31	28	28	11	1.92
6793021--6793053	17	1.9	17	100	0	66	15	24	42	18	1.88
6793027--6793076	22	2.2	24	89	7	77	10	22	50	18	1.76
6793052--6793085	14	2.4	14	95	0	59	11	26	47	14	1.79
6793073--6793132	9	6.3	9	75	11	57	30	30	25	15	1.95
6794075--6794142	34	2.0	34	100	0	136	29	17	32	20	1.96
6794737--6794803	23	2.9	23	78	8	82	61	23	1	13	1.41
6795667--6795774	45	2.4	46	89	7	168	30	20	17	31	1.96
6800315--6800402	29	3.0	29	80	3	122	31	25	3	39	1.72
6800306--6800401	30	3.2	30	80	2	131	32	22	3	41	1.70
6801078--6801130	21	2.5	21	84	0	70	33	26	18	20	1.96
6801145--6801283	40	3.5	40	94	0	251	20	19	24	35	1.95
6801145--6801284	19	7.1	19	72	8	109	20	19	24	36	1.95
6801261--6801310	26	1.9	26	87	0	73	20	18	26	36	1.95
6801886--6801911	3	8.7	3	100	0	52	0	65	34	0	0.93
6802029--6802207	42	4.3	42	92	1	281	36	24	18	20	1.94
6802026--6802232	21	10.0	21	73	13	160	35	24	19	20	1.95
6806515--6806628	60	1.9	60	87	3	167	42	0	7	48	1.38
6807597--6807663	27	2.4	28	95	2	118	37	11	10	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6807916--6807963	21	2.3	21	96	0	87	41	12	18	27	1.86
6815157--6815218	31	2.0	31	100	0	124	32	9	12	45	1.75
6815373--6815397	11	2.3	11	100	0	50	8	8	0	84	0.79
6830985--6831009	12	2.1	12	100	0	50	16	40	28	16	1.89
6831933--6831988	18	3.0	19	74	10	53	26	5	1	66	1.23
6837033--6837194	60	2.7	60	78	11	154	40	4	23	32	1.74
6842372--6842464	31	3.0	31	100	0	186	45	19	3	32	1.66
6852085--6852122	19	2.0	19	100	0	76	36	5	21	36	1.76
6856468--6856564	8	12.9	8	77	12	57	58	3	1	37	1.20
6856523--6856582	22	2.7	22	80	12	68	65	3	0	31	1.09
6857784--6857850	3	22.0	3	85	8	82	62	0	0	37	0.95
6857784--6857854	25	2.9	25	83	6	92	63	0	0	36	0.95
6858067--6858413	139	2.5	139	84	4	416	28	18	12	40	1.88
6858665--6859116	124	3.7	123	91	2	694	25	21	13	39	1.90
6858665--6859116	246	1.8	246	90	1	728	25	21	13	39	1.90
6860648--6860689	18	2.3	18	84	16	59	7	14	0	78	0.95
6860632--6860669	13	2.9	13	100	0	76	7	13	0	78	0.94
6860650--6860690	17	2.3	19	87	8	59	4	17	0	78	0.93
6860637--6860695	29	1.9	32	83	10	79	6	15	0	77	0.96
6860655--6860697	17	2.6	16	82	10	50	6	13	0	79	0.93
6868035--6868066	15	2.1	15	94	0	55	46	9	18	25	1.79
6871360--6871435	28	2.8	28	75	11	77	63	0	1	35	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6872106--6872155	22	2.1	25	85	14	70	66	4	0	30	1.10
6873476--6873539	12	5.0	12	80	14	74	60	0	0	39	0.97
6873477--6873540	3	21.0	3	75	9	58	62	0	0	37	0.95
6875910--6875968	30	2.0	30	86	6	84	47	6	3	42	1.46
6879184--6879222	16	2.5	16	87	4	53	38	7	20	33	1.81
6880162--6880223	31	2.0	31	87	0	88	53	11	8	27	1.64
6881521--6881580	31	1.9	32	96	3	113	20	13	16	50	1.78
6881921--6881968	17	2.7	18	78	12	55	47	0	4	47	1.21
6885980--6886069	31	3.0	31	85	6	114	47	4	8	38	1.55
6886226--6886316	30	3.1	29	82	4	101	40	9	7	41	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38