genome.fa.s8027.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008027.1 Hibiscus syriacus cultivar Beakdansim tig00110503_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7662336

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   

This is table  38  of  38  ( 4505 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7539855--7539991	60	2.2	63	80	6	156	29	25	4	40	1.75
7540652--7540719	10	6.4	10	79	12	64	63	19	8	8	1.49
7540652--7540764	23	5.0	23	76	8	92	63	19	7	9	1.47
7541024--7541070	10	4.3	10	80	19	58	57	12	12	17	1.65
7541035--7541079	14	3.5	13	77	22	51	57	13	13	15	1.65
7541024--7541097	24	3.0	24	88	4	103	56	14	12	16	1.67
7544112--7544140	2	14.5	2	100	0	58	51	0	0	48	1.00
7556283--7556401	32	3.7	32	86	0	175	27	18	21	31	1.97
7560447--7560475	2	14.5	2	100	0	58	51	0	0	48	1.00
7560862--7560997	32	4.3	32	88	1	186	27	18	20	33	1.96
7561948--7561994	21	2.3	20	83	16	62	55	2	0	42	1.12
7563382--7563428	17	2.8	17	81	12	60	53	0	0	46	1.00
7563553--7564178	178	3.5	178	88	2	905	22	21	18	37	1.94
7564242--7564564	42	7.5	42	70	15	230	26	23	13	36	1.92
7564240--7564612	130	2.9	130	93	0	622	26	23	13	36	1.92
7565209--7565259	22	2.3	22	93	0	84	37	15	11	35	1.84
7567857--7568280	216	1.9	216	98	1	821	24	19	17	38	1.92
7573630--7573749	45	2.7	45	93	3	199	40	8	22	29	1.83
7576197--7576242	16	2.9	17	81	9	53	52	0	0	47	1.00
7581946--7582632	149	4.6	149	88	3	1024	39	8	12	38	1.74
7581946--7582632	297	2.3	300	90	3	1082	39	8	12	38	1.74
7583409--7583450	22	1.9	22	95	0	75	11	23	40	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7586060--7586109	23	2.3	23	86	6	77	18	22	42	18	1.90
7591874--7591915	22	1.9	22	90	0	66	11	21	40	26	1.88
7597237--7597386	80	1.9	78	81	10	180	42	8	4	44	1.54
7599818--7599868	2	25.5	2	100	0	102	50	0	0	49	1.00
7600169--7600227	27	2.2	27	87	0	91	55	10	0	33	1.33
7601565--7601621	21	2.8	21	89	5	91	45	24	0	29	1.53
7608882--7608916	17	2.0	17	94	5	61	17	48	22	11	1.79
7608918--7609013	29	3.3	29	85	1	102	26	8	25	40	1.83
7615272--7615322	17	3.0	17	94	0	93	13	35	33	17	1.89
7615273--7615331	17	3.5	17	86	9	84	13	35	30	20	1.91
7617042--7617081	19	2.1	19	100	0	80	32	27	0	40	1.57
7618688--7618750	30	2.1	30	81	0	72	38	0	41	20	1.53
7620395--7620551	20	7.8	20	94	1	253	40	8	24	25	1.84
7620460--7620564	20	5.6	16	87	12	66	39	10	25	24	1.87
7620579--7620721	71	2.0	71	95	0	259	30	4	27	38	1.75
7628806--7628831	13	2.0	13	100	0	52	30	23	15	30	1.95
7628858--7628926	2	35.5	2	88	5	52	39	0	11	49	1.39
7628854--7628915	21	3.0	21	87	0	97	35	0	16	48	1.46
7628862--7628913	19	2.6	19	87	6	77	36	0	15	48	1.45
7636924--7637011	15	5.5	15	74	18	79	45	0	3	51	1.18
7636956--7637056	22	4.5	22	71	7	94	39	0	9	50	1.36
7636994--7637088	32	3.3	32	72	27	120	35	0	11	52	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7636994--7637412	54	7.7	54	81	10	485	34	0	11	53	1.39
7637068--7637110	22	2.0	22	90	0	68	37	0	9	53	1.33
7637090--7637174	32	2.7	32	94	0	143	34	0	10	55	1.34
7637154--7637218	22	3.0	22	90	0	112	36	0	10	52	1.37
7637198--7637304	32	3.7	32	74	23	135	35	0	12	52	1.39
7637230--7637272	22	2.0	22	95	0	77	37	0	11	51	1.39
7637275--7637322	22	2.4	18	73	23	51	33	0	14	52	1.42
7637284--7637352	22	3.0	22	78	15	84	31	1	14	52	1.51
7637387--7637464	26	3.0	26	69	12	61	28	0	12	58	1.34
7637332--7637412	32	2.5	32	95	0	144	32	0	12	55	1.37
7637252--7637500	116	2.2	112	91	2	399	32	0	12	54	1.42
7637480--7637522	22	2.0	22	100	0	86	34	0	13	51	1.42
7637252--7637531	116	2.4	116	85	5	331	32	0	12	54	1.41
7637547--7637605	31	1.9	31	92	0	100	42	10	6	40	1.65
7643504--7643559	24	2.3	24	87	0	76	21	10	17	50	1.77
7644568--7644611	2	22.0	2	100	0	88	50	0	0	50	1.00
7645461--7645492	16	2.0	16	93	0	55	28	0	0	71	0.86
7645867--7645941	31	2.4	31	97	0	141	49	5	6	38	1.52
7660874--7660910	19	1.9	19	88	0	56	83	0	10	5	0.79
7660874--7660910	18	2.0	19	89	5	58	83	0	10	5	0.79
7661860--7662335	136	3.6	136	87	5	704	34	18	23	23	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38

The End!