genome.fa.s8027.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008027.1 Hibiscus syriacus cultivar Beakdansim tig00110503_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7662336

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   

This is table  5  of  38  ( 4505 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
712487--712529	2	21.5	2	100	0	86	51	0	0	48	1.00
712587--712622	18	2.1	18	89	5	56	66	2	5	25	1.27
713232--713287	20	2.7	21	77	5	69	35	17	19	26	1.94
714863--714896	16	2.1	17	89	10	54	41	8	11	38	1.73
716339--716392	24	2.2	24	93	0	90	29	18	11	40	1.85
716346--716393	24	2.0	24	100	0	96	29	20	12	37	1.90
719107--719259	32	4.8	32	83	5	170	28	18	21	30	1.97
726158--726217	26	2.3	26	100	0	120	40	23	20	16	1.91
731742--731791	12	4.2	12	78	0	55	18	28	24	30	1.97
734662--734753	32	2.9	32	84	6	91	26	18	23	31	1.97
734680--734753	30	2.4	31	86	4	105	27	17	25	29	1.97
735486--735541	22	2.4	23	79	8	69	21	12	19	46	1.83
738426--738525	31	3.2	31	76	7	103	32	19	18	31	1.95
739296--739340	22	2.0	23	95	4	83	17	17	17	46	1.84
740409--740465	28	2.0	28	96	0	105	24	14	19	42	1.88
751328--751402	22	3.4	22	90	0	114	28	25	21	25	1.99
754592--754655	22	3.1	22	70	21	66	37	20	6	35	1.78
757037--757081	2	23.0	2	95	4	83	51	0	0	48	1.00
757808--757833	2	13.0	2	100	0	52	50	0	0	50	1.00
758676--758716	21	2.0	21	90	0	64	26	14	21	36	1.93
760048--760080	3	11.0	3	100	0	66	33	0	0	66	0.92
761467--761505	19	2.2	17	86	13	53	5	2	10	82	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
763590--763730	36	4.0	36	87	3	205	31	14	7	46	1.72
763590--763728	70	2.0	72	89	2	219	30	14	7	46	1.73
765525--765576	25	2.1	25	85	0	68	32	21	13	32	1.92
766363--766452	39	2.3	40	84	3	112	21	24	18	35	1.96
766376--766466	39	2.3	39	78	0	101	24	26	17	31	1.97
768021--768072	26	2.0	26	82	10	63	36	0	17	46	1.48
768682--768753	29	2.5	29	100	0	144	38	11	11	38	1.76
768775--768833	30	2.0	30	93	0	100	38	5	23	32	1.77
769079--769146	24	2.8	24	70	18	68	23	23	25	27	2.00
775783--775854	29	2.5	29	100	0	144	38	11	11	38	1.76
775876--775934	30	2.0	30	93	0	100	38	5	23	32	1.77
776180--776247	24	2.8	24	70	18	68	23	23	25	27	2.00
779277--779311	3	11.7	3	100	0	70	31	0	0	68	0.90
779803--780012	77	2.8	75	84	5	253	43	15	10	31	1.79
787044--787086	14	2.9	15	74	19	54	55	16	6	20	1.64
787031--787086	29	1.9	29	89	7	87	55	14	8	21	1.66
787853--787922	37	1.9	37	88	2	106	48	2	0	48	1.16
791226--791260	18	1.9	18	88	0	52	60	8	17	14	1.58
796065--796261	107	1.8	107	81	6	247	25	23	23	26	2.00
796856--796984	58	2.2	59	87	8	183	37	17	10	34	1.84
799133--799157	2	12.5	2	100	0	50	48	0	0	52	1.00
799637--799698	31	2.0	32	90	3	99	32	12	11	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
801345--801406	32	1.9	32	96	0	115	38	9	14	37	1.79
803647--803686	21	1.9	21	84	0	53	52	5	5	37	1.45
804337--804416	23	3.4	24	86	3	110	58	18	12	10	1.61
804685--804736	3	17.7	3	84	4	61	40	0	0	59	0.97
804948--804996	18	2.7	18	87	0	71	32	28	0	38	1.57
805868--805911	21	2.1	21	100	0	88	34	18	13	34	1.90
808873--808911	20	2.0	20	84	0	51	20	15	30	33	1.94
809246--809273	14	2.0	14	100	0	56	28	35	0	35	1.58
811608--811670	24	2.6	24	94	0	108	33	19	26	20	1.96
817481--817605	64	2.0	63	84	9	164	32	15	23	29	1.95
817586--817624	20	2.0	20	89	0	60	20	15	33	30	1.94
819354--819402	20	2.5	20	86	6	64	28	16	32	22	1.95
824790--824829	20	2.0	20	90	0	62	57	2	0	40	1.12
826948--826979	14	2.3	15	89	10	50	37	9	0	53	1.34
830071--830136	21	3.2	21	71	4	71	18	18	25	37	1.93
830075--830210	41	3.3	41	93	0	227	22	22	21	33	1.97
830148--830224	20	3.8	20	67	3	64	20	23	18	37	1.94
830228--830276	22	2.2	22	96	0	89	20	14	26	38	1.91
830979--831149	20	8.8	20	78	11	185	41	21	21	15	1.90
834944--835040	24	4.0	24	77	5	97	20	16	16	46	1.84
835439--835477	18	2.2	18	95	0	69	20	33	12	33	1.91
838502--838531	7	4.3	7	91	0	51	60	3	0	36	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
841726--841836	32	3.5	32	88	0	132	17	27	27	27	1.97
841726--841857	32	4.1	32	86	0	102	18	29	25	27	1.98
844112--844283	86	2.0	86	93	2	292	31	16	16	36	1.91
845379--845417	20	1.9	21	85	15	55	56	0	0	43	0.99
858121--858163	22	2.0	22	90	0	68	37	11	30	20	1.89
858480--858707	54	4.2	54	85	2	296	34	21	16	27	1.95
858620--858795	88	2.0	88	88	0	262	37	15	16	30	1.90
858737--858901	54	3.1	54	89	1	242	33	20	18	27	1.96
858541--858901	195	1.8	196	89	1	564	36	18	16	28	1.93
864978--865070	20	4.7	20	100	0	186	38	16	29	16	1.90
865472--865776	54	5.6	54	88	1	450	36	20	16	26	1.94
865472--865818	108	3.2	107	85	4	446	35	20	16	27	1.94
867291--867417	41	3.3	40	68	22	110	32	11	22	33	1.89
868870--868910	19	2.2	19	86	8	57	26	17	29	26	1.97
868864--868941	20	3.8	20	72	20	63	25	17	29	26	1.98
869497--869584	23	3.9	23	73	15	85	25	23	23	27	2.00
870365--870434	22	3.2	22	75	0	77	25	18	20	35	1.95
871329--871360	15	2.1	15	100	0	64	40	6	6	46	1.54
877363--877466	37	2.8	37	88	0	154	40	15	15	28	1.88
878025--878132	22	4.9	23	72	21	88	27	5	0	65	1.21
878152--878192	11	3.6	11	87	6	55	24	4	4	65	1.32
878588--878630	2	21.5	2	100	0	86	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
883305--883354	14	3.6	14	82	17	68	80	6	14	0	0.90
883301--883364	16	4.0	16	78	15	69	79	6	12	1	0.98
883971--884047	22	3.5	22	87	0	109	37	25	14	22	1.92
884956--885913	106	9.0	106	92	0	1468	34	24	18	22	1.96
886644--886748	37	2.8	37	85	5	149	40	15	14	29	1.86
887300--887407	22	4.9	23	72	21	88	27	5	0	65	1.21
887427--887467	11	3.6	11	87	6	55	24	4	4	65	1.32
887860--887884	2	12.5	2	100	0	50	48	0	0	52	1.00
887960--888080	24	5.0	24	71	21	76	23	3	3	70	1.17
887946--888081	22	5.7	24	69	23	81	24	2	2	69	1.16
889208--889253	18	2.7	17	86	6	58	36	6	28	28	1.82
889820--889886	28	2.4	28	92	2	109	41	32	8	16	1.79
890059--890142	38	2.2	38	91	2	143	36	41	9	11	1.75
889769--890326	253	2.2	244	89	5	845	35	27	12	25	1.92
896829--896862	16	2.1	17	88	5	52	64	0	0	35	0.94
898615--898680	3	22.0	3	87	6	62	43	0	0	56	0.99
900746--900797	16	3.2	16	86	10	63	23	1	0	75	0.91
902417--902458	14	3.0	14	89	0	66	28	14	4	52	1.62
902421--902466	14	3.3	14	87	0	65	26	10	4	58	1.50
905991--906043	26	2.0	26	96	0	97	67	11	16	3	1.35
906024--906081	27	2.2	24	82	14	71	77	0	18	3	0.91
908244--908581	114	3.0	114	90	0	514	32	15	20	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
910648--910801	50	3.0	50	75	10	159	37	14	24	24	1.92
911175--911248	22	3.4	22	92	0	121	37	10	10	40	1.75
911650--911982	113	3.0	112	91	4	532	38	16	18	26	1.92
911911--911965	17	3.1	17	68	27	51	47	9	23	20	1.78
912031--912290	113	2.3	113	92	0	421	36	15	19	28	1.92
912565--912639	3	25.0	3	84	10	82	40	1	0	58	1.06
914064--914117	22	2.3	23	78	12	58	42	0	1	55	1.10
918655--918763	45	2.4	45	84	6	148	25	22	11	39	1.89
918852--918988	68	2.0	68	91	0	220	30	25	14	29	1.95
919345--919645	54	5.6	54	93	0	494	32	20	18	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38