genome.fa.s8027.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008027.1 Hibiscus syriacus cultivar Beakdansim tig00110503_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7662336

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   

This is table  36  of  38  ( 4505 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7212721--7212820	43	2.3	43	85	0	137	30	18	20	32	1.96
7214071--7214290	41	5.4	40	80	9	214	34	19	14	31	1.92
7214072--7214272	83	2.4	83	85	3	264	32	19	13	33	1.91
7214081--7214315	83	2.9	81	81	5	258	31	17	16	34	1.92
7214737--7214824	43	2.0	43	91	0	140	26	35	11	27	1.90
7215828--7215971	60	2.4	61	89	2	211	38	14	12	34	1.84
7216984--7217051	27	2.3	31	78	19	99	38	19	14	27	1.91
7216993--7217049	27	2.1	27	96	0	105	36	19	12	31	1.89
7225139--7225203	28	2.3	28	97	0	121	46	3	21	29	1.67
7226105--7226162	20	3.0	20	85	7	84	20	20	29	29	1.98
7232662--7232715	18	2.9	18	78	13	56	22	18	27	31	1.97
7235728--7235768	11	3.8	11	78	18	50	24	4	0	70	1.06
7235893--7235919	4	6.8	4	100	0	54	22	0	0	77	0.76
7239547--7239597	22	2.3	22	96	0	93	35	13	15	35	1.87
7240230--7240479	45	5.5	45	87	3	349	23	22	22	32	1.98
7240231--7240479	92	2.7	90	87	4	356	23	22	22	32	1.98
7240487--7240602	45	2.6	45	97	0	214	22	23	18	35	1.96
7242089--7242152	25	2.5	27	82	12	82	26	3	6	64	1.33
7242272--7242335	25	2.5	27	82	12	82	26	3	6	64	1.33
7242327--7242396	3	23.0	3	75	5	61	32	1	5	60	1.29
7242327--7242394	12	5.8	12	77	16	72	33	1	5	58	1.31
7242343--7242407	34	1.9	34	100	0	130	33	3	6	56	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7242422--7242468	18	2.7	18	80	9	53	34	2	0	63	1.06
7248416--7248454	9	4.7	9	87	12	57	82	0	17	0	0.68
7248417--7248454	8	4.8	8	87	12	60	81	0	18	0	0.69
7248417--7248445	15	1.9	15	100	0	58	82	0	17	0	0.66
7248943--7249003	32	1.9	32	89	0	95	45	19	13	21	1.84
7252851--7253006	54	2.9	54	82	0	195	36	14	23	26	1.92
7253374--7253424	22	2.3	22	89	0	84	35	13	13	37	1.85
7253959--7254091	45	2.9	45	86	2	158	25	24	19	30	1.98
7254102--7254212	45	2.4	46	83	8	138	25	21	20	32	1.98
7253982--7254330	120	2.9	119	90	2	513	23	21	21	33	1.97
7254222--7254368	45	3.3	45	92	0	242	23	21	21	33	1.97
7254107--7254488	165	2.3	165	94	0	665	22	21	21	33	1.97
7254272--7254574	120	2.5	121	92	1	500	22	22	22	33	1.97
7254387--7254499	45	2.5	45	92	4	192	21	23	23	31	1.98
7254431--7254649	76	2.9	75	93	2	370	22	22	20	34	1.97
7254583--7254698	45	2.6	45	95	0	214	23	23	18	34	1.96
7254858--7254946	3	29.3	3	77	2	70	41	1	2	55	1.20
7255319--7255361	21	2.0	21	81	0	50	69	9	18	2	1.26
7256026--7256050	4	6.2	4	100	0	50	52	0	0	48	1.00
7256194--7256257	25	2.5	27	80	12	73	28	3	4	64	1.29
7256249--7256281	3	11.0	3	100	0	66	33	0	0	66	0.92
7260819--7260878	22	2.7	21	77	10	57	50	3	3	43	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7260860--7260893	16	2.1	16	88	0	50	50	0	2	47	1.16
7260935--7260968	16	2.0	18	88	11	54	26	2	5	64	1.30
7261579--7261622	16	2.8	16	96	0	79	29	25	20	25	1.99
7262098--7262173	35	2.2	35	92	0	125	35	1	23	39	1.63
7262625--7262677	21	2.5	21	81	6	72	20	26	18	33	1.96
7262667--7262734	21	3.3	21	91	2	102	39	16	22	22	1.92
7262725--7262862	41	3.4	41	78	2	152	35	25	15	23	1.94
7262728--7262842	20	5.7	20	78	6	97	33	26	16	23	1.96
7263029--7263072	22	2.0	22	90	0	70	22	40	15	20	1.90
7263335--7263383	20	2.5	20	96	0	89	24	20	24	30	1.98
7263371--7263413	20	2.2	20	91	0	68	11	18	16	53	1.72
7263550--7263604	25	2.2	24	81	9	65	20	7	18	54	1.66
7265303--7265369	20	3.4	20	81	2	73	38	23	22	14	1.92
7265358--7265416	14	3.9	14	76	20	64	49	23	16	10	1.77
7265342--7265433	33	2.8	33	98	0	175	47	21	18	11	1.80
7265342--7265438	19	5.6	19	71	22	97	46	21	19	12	1.83
7265448--7265536	20	4.5	20	85	1	117	14	23	24	37	1.93
7265507--7265562	20	2.8	20	86	0	67	23	14	28	33	1.94
7265911--7265979	21	3.3	20	74	6	66	24	40	15	18	1.90
7265901--7265991	41	2.2	42	86	2	130	21	40	15	21	1.90
7267400--7267438	14	2.8	14	84	0	51	35	0	17	46	1.49
7267575--7267623	19	2.6	19	100	0	98	48	16	20	14	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7267804--7267837	12	2.9	12	86	4	52	17	41	5	35	1.74
7268374--7268420	24	2.0	24	91	0	76	29	19	17	34	1.94
7268607--7268643	12	3.1	12	100	0	74	72	0	27	0	0.84
7271892--7271920	14	2.1	14	100	0	58	79	0	20	0	0.74
7271889--7271921	12	2.8	12	86	13	50	75	0	24	0	0.80
7276885--7276937	22	2.4	22	83	0	70	35	15	11	37	1.83
7277341--7278128	113	7.0	113	86	4	1010	37	13	18	30	1.90
7277341--7278127	225	3.5	225	88	2	1129	37	13	18	30	1.90
7277840--7277885	23	2.0	22	83	4	56	52	8	21	17	1.71
7277343--7278127	337	2.3	338	89	4	1203	37	13	18	30	1.90
7279648--7279689	12	3.6	12	74	6	50	28	2	4	64	1.26
7282416--7282546	19	7.7	19	66	23	94	43	18	22	15	1.87
7282416--7282542	33	3.8	33	88	4	202	43	18	22	15	1.88
7282419--7282549	66	2.0	66	98	0	253	42	17	22	16	1.88
7282542--7282618	19	4.3	19	76	18	85	12	16	24	45	1.83
7282557--7282683	33	3.8	33	90	2	193	11	21	21	45	1.83
7282609--7282665	14	3.7	14	75	20	60	10	24	21	43	1.83
7282552--7282683	19	7.7	19	69	23	89	11	21	21	46	1.82
7282792--7282826	14	2.5	14	90	0	61	45	22	0	31	1.53
7284216--7284295	42	1.9	42	86	0	115	22	18	38	20	1.93
7284517--7284701	91	2.0	90	90	6	291	47	18	12	22	1.82
7286437--7286492	14	3.6	14	74	21	58	39	25	25	10	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7286414--7286511	33	2.9	33	95	1	169	40	23	24	11	1.87
7286450--7286566	52	2.2	52	95	0	207	43	22	23	11	1.84
7286388--7286566	19	10.1	19	70	22	131	44	21	22	11	1.85
7286562--7286625	19	3.4	19	95	0	101	9	15	25	50	1.74
7286578--7286679	52	2.0	52	80	3	116	13	20	19	46	1.84
7287195--7287240	20	2.3	20	96	0	83	19	23	19	36	1.95
7287242--7287296	20	2.7	21	80	5	67	45	16	18	20	1.86
7287242--7287306	21	3.1	21	80	4	69	41	16	20	21	1.90
7287316--7287367	20	2.5	21	87	3	70	21	23	17	38	1.93
7287215--7287382	41	4.1	40	70	7	113	31	19	19	29	1.96
7287357--7287409	21	2.5	22	81	6	74	33	18	26	20	1.96
7287171--7287409	123	2.0	120	84	3	300	31	18	20	28	1.97
7293892--7294048	39	4.0	39	92	0	233	24	9	28	37	1.87
7301618--7301675	27	2.1	27	84	6	73	27	15	15	41	1.87
7304066--7304108	21	2.0	22	90	4	70	27	18	25	27	1.98
7304117--7304160	22	2.0	22	100	0	88	9	22	50	18	1.75
7311211--7311259	5	9.8	5	81	16	57	4	22	53	20	1.63
7311204--7311247	21	2.0	21	95	4	79	9	22	50	18	1.75
7311210--7311256	9	5.3	9	75	14	53	4	23	53	19	1.63
7311256--7311302	9	5.1	9	82	5	58	29	31	25	12	1.93
7321000--7321033	15	2.3	15	89	0	50	35	14	11	38	1.83
7321432--7321492	23	2.8	23	82	7	65	19	29	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7321562--7321612	21	2.4	21	100	0	102	9	49	3	37	1.55
7325368--7325397	13	2.3	13	100	0	60	23	0	26	50	1.50
7327037--7327138	2	51.0	2	100	0	204	50	0	0	50	1.00
7328142--7328238	48	2.0	48	97	0	185	42	32	10	14	1.79
7328968--7329077	40	2.7	40	85	2	139	29	20	21	28	1.98
7329085--7329316	117	2.0	117	82	3	288	27	24	12	35	1.91
7330977--7331265	109	2.7	107	80	6	287	41	16	10	31	1.82
7330958--7331262	55	5.6	55	81	6	289	41	17	9	30	1.82
7337819--7337872	29	2.0	28	85	10	76	59	1	7	31	1.36
7338283--7338313	2	15.5	2	100	0	62	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38