genome.fa.s8029.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008029.1 Hibiscus syriacus cultivar Beakdansim tig00110505_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3983240

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  13  of  18  ( 2124 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2506312--2506354	22	2.0	22	100	0	86	34	0	13	51	1.42
2506370--2506462	22	3.8	22	72	24	87	37	0	10	51	1.37
2506237--2506941	80	8.8	78	77	16	578	35	0	11	52	1.38
2506607--2506666	30	1.9	32	93	6	106	36	0	8	55	1.30
2506646--2506712	22	3.0	22	72	24	68	37	0	8	53	1.32
2506686--2506738	14	3.5	14	72	18	52	37	0	5	56	1.23
2506700--2506756	18	3.4	18	69	18	59	33	0	12	54	1.38
2506682--2506761	32	2.5	32	97	0	151	36	0	10	53	1.34
2506280--2506831	54	10.3	54	78	12	541	35	0	12	52	1.39
2506741--2506782	21	2.0	22	95	4	77	35	0	14	50	1.43
2506794--2506955	22	6.6	22	67	23	74	31	0	12	55	1.38
2506850--2506986	51	2.9	46	74	18	127	32	0	10	56	1.33
2506892--2507084	74	2.6	72	83	11	223	29	0	14	55	1.39
2507039--2507200	32	5.7	32	72	26	157	37	0	9	53	1.35
2507040--2507217	54	3.3	54	91	0	293	36	0	10	53	1.35
2507358--2507487	32	4.4	32	78	18	172	37	0	8	53	1.31
2507321--2507703	54	7.2	54	68	22	222	34	0	11	54	1.39
2507358--2507567	80	2.5	80	87	4	285	34	0	10	54	1.35
2507231--2507671	112	4.1	109	78	11	463	32	0	11	55	1.40
2507517--2507599	32	2.6	32	96	0	148	34	1	12	51	1.47
2507651--2507693	22	2.0	22	100	0	86	34	0	13	51	1.42
2509434--2509472	20	2.0	20	89	0	60	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2509434--2509470	13	2.8	14	84	8	51	48	0	0	51	1.00
2518437--2518612	85	2.1	86	98	1	345	44	29	11	14	1.80
2520995--2521100	31	3.5	31	76	11	101	13	26	27	33	1.93
2523613--2523787	81	2.2	81	91	0	287	27	22	10	39	1.87
2523941--2524429	55	8.9	55	89	1	680	28	18	17	34	1.94
2523941--2524429	109	4.5	110	89	1	716	28	18	17	34	1.94
2529433--2529489	20	2.8	20	86	0	60	33	35	19	12	1.89
2529491--2529560	22	3.2	22	77	0	77	17	20	25	37	1.94
2530272--2530372	31	3.3	31	82	0	121	14	26	29	28	1.95
2531653--2531961	150	2.1	151	98	1	595	30	21	2	45	1.65
2532208--2532249	2	21.0	2	90	0	66	45	0	0	54	0.99
2532556--2532629	18	3.9	18	81	10	94	27	31	20	21	1.98
2532553--2532629	39	2.0	39	92	0	127	27	29	19	23	1.98
2537293--2537332	21	1.9	21	85	10	55	30	17	0	52	1.45
2537405--2537456	2	26.0	2	100	0	104	50	0	0	50	1.00
2537762--2537796	18	1.9	18	94	0	61	25	31	22	20	1.98
2543656--2543817	80	2.0	80	100	0	324	32	17	11	38	1.85
2558248--2558286	15	2.6	15	91	0	69	43	7	25	23	1.80
2562278--2562338	21	3.0	19	79	13	68	26	37	24	11	1.89
2562280--2562319	20	2.0	20	90	5	62	25	37	25	12	1.91
2571942--2572001	30	1.9	32	90	6	97	65	5	1	28	1.23
2573088--2573155	29	2.3	28	74	18	66	23	8	11	55	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2575772--2576029	98	2.6	97	87	2	336	33	17	18	30	1.94
2577053--2577217	36	4.6	35	89	3	161	27	21	12	38	1.89
2577078--2577225	36	4.1	36	93	0	251	28	20	12	37	1.90
2577108--2577208	21	5.4	21	65	29	84	26	21	10	40	1.86
2577244--2577309	21	3.5	21	67	25	65	22	19	12	45	1.83
2577253--2577364	36	3.1	36	84	5	145	24	20	15	40	1.91
2577350--2577431	34	2.4	34	87	2	130	40	18	7	34	1.78
2582179--2582229	21	2.4	21	93	0	84	31	31	21	15	1.95
2582225--2582518	21	14.1	21	70	16	152	21	17	23	37	1.94
2582281--2582526	42	5.9	42	92	0	388	20	17	25	37	1.93
2583270--2583305	10	3.3	11	92	7	56	0	16	55	27	1.42
2583267--2583301	5	6.6	5	96	3	52	0	20	54	25	1.45
2583395--2583804	21	19.7	19	75	13	228	36	22	18	22	1.95
2583406--2583785	42	9.1	41	79	11	275	37	22	18	21	1.95
2583406--2583785	63	6.1	62	91	4	511	37	22	18	21	1.95
2583819--2583871	21	2.5	20	93	0	70	28	30	22	18	1.98
2583904--2583976	35	2.1	35	94	0	128	24	17	27	30	1.97
2589025--2589069	3	15.0	3	90	0	54	35	6	0	57	1.25
2590387--2590546	65	2.5	64	87	4	223	29	18	22	30	1.97
2593283--2593339	23	2.6	23	83	5	73	22	22	26	28	1.99
2598055--2598217	65	2.5	66	81	7	192	28	17	22	31	1.96
2600037--2600514	238	2.0	239	98	1	924	39	21	6	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2603068--2603187	42	2.9	41	77	7	125	26	5	7	60	1.44
2603264--2603379	44	2.8	42	77	17	118	25	17	5	51	1.65
2604547--2604606	27	2.2	27	100	0	120	31	3	25	40	1.72
2605885--2605917	16	2.1	16	94	0	57	60	24	9	6	1.49
2605988--2606027	16	2.5	16	95	0	71	62	17	10	10	1.53
2607104--2607149	14	3.6	13	77	22	53	63	10	10	15	1.53
2607104--2607182	24	3.3	24	92	0	122	59	16	11	12	1.61
2607127--2607178	14	4.0	14	76	19	58	55	21	13	9	1.66
2607117--2607213	34	2.9	34	75	6	97	53	20	14	11	1.71
2607138--2607188	10	4.7	10	80	17	57	54	25	11	7	1.63
2607148--2607189	14	3.3	14	75	25	56	52	26	14	7	1.67
2611040--2611155	49	2.4	49	86	2	153	29	6	31	32	1.84
2611249--2611304	28	2.0	28	100	0	112	21	14	28	35	1.92
2627439--2627473	18	1.9	18	88	0	52	28	17	0	54	1.43
2628771--2628795	13	1.9	13	100	0	50	20	24	40	16	1.91
2640249--2640282	17	2.0	17	94	0	59	32	0	5	61	1.20
2646476--2646525	2	25.0	2	100	0	100	50	0	0	50	1.00
2657873--2657902	3	10.0	3	100	0	60	66	0	0	33	0.92
2658747--2658799	21	2.6	19	77	16	52	58	7	13	20	1.59
2658761--2658790	14	2.1	14	93	0	51	60	3	16	20	1.50
2661004--2661060	20	2.8	20	72	0	51	31	17	14	36	1.89
2670237--2670422	93	2.0	93	92	4	313	32	26	9	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2671639--2671686	21	2.4	21	83	16	66	18	6	6	68	1.32
2677984--2678048	31	2.1	31	94	0	112	23	12	13	50	1.75
2678094--2678132	20	2.0	20	90	10	62	30	7	0	61	1.24
2684110--2684164	19	2.8	19	83	5	56	56	1	0	41	1.10
2684398--2684513	60	2.0	60	82	5	146	36	13	3	46	1.61
2684585--2685137	308	1.8	297	86	5	804	44	7	13	34	1.72
2688105--2688146	21	2.0	21	95	0	75	30	14	7	47	1.71
2688141--2688239	33	3.0	33	94	1	164	32	7	15	45	1.73
2688225--2688279	13	4.2	13	75	13	58	34	3	12	49	1.59
2688475--2688531	21	2.7	21	97	0	105	19	28	26	26	1.99
2690170--2690383	54	4.0	53	91	1	338	30	13	18	37	1.89
2692987--2693028	4	10.5	4	100	0	84	23	0	0	76	0.79
2698040--2698127	24	3.7	24	73	20	76	76	1	18	4	1.02
2698040--2698118	36	2.2	36	84	8	99	77	1	16	5	1.01
2698076--2698118	12	3.6	12	78	9	52	79	0	16	4	0.90
2699915--2699948	17	2.1	17	88	5	52	44	11	2	41	1.56
2700806--2700835	12	2.4	13	94	5	53	56	6	0	36	1.26
2706917--2706952	17	2.2	17	90	5	56	44	13	0	41	1.44
2709461--2709985	232	2.2	233	84	5	659	36	13	16	33	1.88
2709783--2709891	41	2.7	41	70	7	96	26	19	22	32	1.97
2714867--2714900	17	2.0	17	100	0	68	29	5	23	41	1.78
2723468--2723678	105	2.0	104	96	2	388	51	10	18	18	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2727440--2727487	24	2.0	24	95	0	87	27	16	31	25	1.97
2748239--2748320	3	26.7	3	85	4	110	39	0	0	60	0.96
2750220--2750262	19	2.4	18	81	11	52	37	0	2	60	1.10
2753551--2753582	15	2.1	15	94	0	55	25	18	9	46	1.79
2756346--2757111	113	6.8	113	93	1	1150	37	14	18	29	1.91
2756346--2757111	227	3.4	226	91	1	1150	37	14	18	29	1.91
2757361--2757436	3	24.7	3	84	5	89	40	0	0	59	0.98
2759921--2759974	27	2.0	27	85	0	72	18	11	11	59	1.60
2760419--2760465	24	2.0	24	83	8	60	55	2	8	34	1.42
2767324--2767379	15	3.6	15	79	9	67	42	12	12	32	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18