genome.fa.s8029.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008029.1 Hibiscus syriacus cultivar Beakdansim tig00110505_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3983240

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  18  of  18  ( 2124 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3762254--3762353	30	3.3	30	80	1	110	46	42	5	7	1.53
3762282--3762351	36	1.9	36	91	0	113	48	41	5	4	1.46
3762272--3762356	36	2.4	36	84	2	109	48	42	4	4	1.45
3762695--3762876	97	1.9	98	83	1	240	12	9	26	51	1.70
3763571--3763650	23	3.5	24	79	6	94	32	23	22	21	1.98
3769541--3769589	20	2.5	20	100	0	98	36	26	8	28	1.85
3771979--3772018	21	1.9	21	89	0	62	40	7	15	37	1.75
3772649--3772709	27	2.2	27	82	8	70	34	22	8	34	1.84
3774738--3774833	45	2.1	46	86	1	131	33	14	18	33	1.91
3775526--3775556	16	1.9	16	93	0	53	48	29	0	22	1.51
3775881--3775962	23	3.6	23	74	11	71	30	19	24	25	1.98
3781429--3781552	62	2.0	60	96	3	230	35	16	12	35	1.87
3781911--3782040	66	2.0	66	100	0	260	37	15	23	23	1.93
3782114--3782264	65	2.3	65	81	3	180	32	15	20	31	1.94
3782275--3782345	20	3.6	20	90	3	117	21	12	32	33	1.91
3787409--3787603	45	4.3	44	85	3	210	29	22	10	37	1.87
3791163--3791320	73	2.1	75	83	8	198	26	18	25	28	1.98
3791623--3791656	12	2.7	13	86	9	52	41	5	8	44	1.60
3793945--3794039	20	4.6	21	81	10	88	31	14	28	25	1.95
3798840--3798882	20	2.2	20	100	0	86	30	25	4	39	1.76
3799703--3799887	74	2.5	74	86	6	241	23	19	27	29	1.98
3801341--3801387	16	2.9	16	100	0	94	6	29	0	63	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3806720--3806794	26	2.9	26	89	0	114	33	24	5	37	1.78
3808696--3808730	17	2.1	17	89	10	54	45	8	0	45	1.34
3808752--3808815	28	2.3	28	86	5	85	42	3	0	54	1.16
3811907--3811963	29	2.0	29	93	6	98	12	35	31	21	1.90
3812084--3812151	33	2.1	33	97	0	127	8	39	25	26	1.85
3812088--3812218	10	12.1	10	68	13	55	9	33	30	25	1.89
3812084--3812168	33	2.6	33	90	0	116	8	36	28	27	1.85
3812155--3812182	14	2.0	14	100	0	56	7	28	42	21	1.79
3812169--3812216	20	2.4	20	86	6	62	12	27	35	25	1.92
3816116--3816328	99	2.2	99	100	0	426	34	9	10	46	1.70
3820230--3820300	34	2.2	32	87	5	97	22	29	15	32	1.95
3820662--3820746	20	4.2	20	90	0	125	29	20	29	21	1.98
3820814--3820867	21	2.6	21	93	0	90	22	18	37	22	1.95
3824538--3824571	16	2.1	16	94	0	59	44	23	0	32	1.54
3825091--3825125	18	1.9	18	88	0	52	20	31	31	17	1.95
3828466--3828536	29	2.5	28	95	2	124	60	9	11	18	1.57
3828466--3828553	29	3.1	30	85	11	105	62	9	9	19	1.51
3829879--3830413	139	3.8	139	88	2	745	27	21	16	34	1.95
3831348--3831448	42	2.4	41	77	11	107	32	22	17	26	1.97
3830939--3831476	274	2.0	274	86	2	758	35	20	15	28	1.93
3831501--3831799	107	2.8	107	81	4	323	40	15	12	31	1.84
3831503--3831806	55	5.6	54	81	3	290	40	15	12	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3831503--3831806	54	5.6	53	81	3	288	40	15	12	31	1.84
3833007--3833054	19	2.5	19	100	0	96	20	22	41	14	1.89
3835661--3835722	23	2.7	23	90	2	90	20	24	32	22	1.98
3842581--3842652	28	2.5	28	77	2	72	23	5	36	34	1.78
3843312--3843393	9	9.9	8	77	12	60	1	18	2	78	0.94
3843304--3843399	21	4.7	21	75	19	80	1	19	2	77	0.94
3843304--3843393	8	12.1	7	74	16	67	1	18	2	77	0.93
3843339--3843410	21	3.4	22	83	12	64	1	16	8	73	1.14
3849674--3849710	20	1.9	19	89	10	58	18	21	10	48	1.78
3856823--3856855	14	2.4	14	94	0	57	33	6	30	30	1.82
3870597--3870628	16	2.0	16	93	0	55	34	6	25	34	1.81
3885215--3885252	10	3.8	10	86	10	51	73	0	18	7	1.06
3885229--3885344	8	13.6	9	69	26	58	73	0	18	8	1.08
3885228--3885351	18	6.7	18	68	23	64	74	0	17	8	1.06
3885267--3885351	18	4.7	18	74	14	77	76	0	16	7	0.99
3885221--3885351	26	5.0	26	70	21	96	74	0	18	7	1.05
3894870--3894928	29	2.0	29	96	0	109	22	13	15	49	1.79
3899539--3899597	29	2.0	29	96	0	109	22	10	15	52	1.72
3915771--3915818	21	2.2	22	78	14	55	79	2	12	6	1.01
3925675--3925896	112	2.0	112	97	0	417	28	13	14	43	1.83
3925989--3926058	3	23.3	3	100	0	140	0	67	0	32	0.91
3926723--3926784	19	3.4	18	74	17	65	6	14	27	51	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3929360--3930172	407	2.0	408	91	0	1331	32	16	15	34	1.91
3933075--3933120	23	2.0	24	82	4	58	19	4	10	65	1.41
3933260--3933304	20	2.2	20	84	0	54	44	2	2	51	1.26
3939855--3939925	29	2.4	29	95	2	124	25	0	4	70	1.05
3939872--3939923	13	3.8	13	71	14	50	26	0	1	71	0.97
3941996--3942024	15	1.9	15	100	0	58	34	31	20	13	1.92
3942136--3942188	23	2.2	26	90	10	85	30	24	5	39	1.78
3942495--3942720	64	3.5	63	79	7	215	28	19	19	32	1.96
3948669--3948737	24	2.8	26	83	12	85	31	24	5	37	1.79
3948702--3948737	12	3.0	12	91	0	63	36	25	5	33	1.79
3949046--3949266	64	3.5	64	86	3	241	27	18	20	33	1.96
3959837--3959866	15	1.9	16	93	6	53	40	6	20	33	1.78
3965884--3965922	17	2.3	17	90	0	60	38	7	46	7	1.61
3980154--3980225	24	3.0	25	80	8	78	26	20	23	29	1.99
3980973--3981004	12	2.7	12	95	0	55	21	25	18	34	1.96
3982854--3982901	18	2.7	18	87	6	62	39	0	0	60	0.97
3982827--3982881	15	3.7	15	76	13	60	29	1	1	67	1.11
3982847--3982901	21	2.6	21	77	11	67	40	0	0	60	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18

The End!